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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068699 ID=TCONS_00068699|Name=TCONS_00068699|organism=Clytia hemisphaerica|type=transcript|length=2460bp
ATTTGATACGTGCTTTACTGTATCAAATTGGTGTTAAAAGTGATCATCAA
GTATTGAAAGAAAATGAGTAGCTCATCAGAATCTGAAGATCCATCATTAA
CAGGAGATGCAACGCGAAGTGAAACCAAGATCGCTTTTGTAATCGTTGGA
ATTGTCATCTTGTTCATTCTTGGTGTTGGAGTTTATATCGTGTATAAGTT
TTACAAAAGGAGGAAAAGGCTATTGAACAATAATGAAGTTTTACAGAGAG
ATCATGATATCAAAACAAGCATGGAACCTTTACCAAGTTGAATGGAAAGT
GATATCTGGATGGAAGAGGGCTCTGGTTGAACGAGAAGGAATCTCCAATT
GGAAGGTATTCAAGATCTACGGAAGAAGAAGTCTTCACAGCTTTTGGatt
taaaatcattaaaatgagacaatggtacatcaaagaataAGTTAGACCTT
TACCAAGTTTGATGGTGATTCATTTGTTGAACCGAATAAAACCATAGAAT
GGACATTGGATGCTGAACTTGTGGCTAGCCTGTCTACATTATTATGTTGC
ATTGACATGTGAGTTCACCAACCAGCGAATTTATGTATTGGCATCATCAT
TCCATTCATTAGAGAAGCAAGTTGTATTTGTGATATTCATGacgcaatat
ttttttcttctacgGAAACTCCCCGTTCTTTTCCGTTCAAAGTTTGCCAC
TACTGGAAAAAACCGAGGTGTTTCCTTAAAAACATTACCTCGTGGATATC
ATGAATTGTGGTTCTGTGTTCCACGGTGTAATTTTTGGTAATCATGAAAC
CTAAATGAAATCGGCAACTCGTGGTTAAGTTTTGTTGAAGCTAAGAAGGT
CAATGTGTTTTTTTAGTCATACGTCATTGTATGTAAACAAGGAACATTGA
TGTCAATTAGACTGACTGTATGACGGAATGGAGGAGAGCTTATTATATGA
AGCAGcagaaaagttatttttcaCTAAGAAGCCGCAAACACTTGTAAAGC
TTTGATCTGGCTCTTGACAATATCCAgttaacaaaaataataaaattctt
cGTCAAACAGAACAAAACTTGCGACATTGAACTTACGAGTAGAAGTTTTG
TTTCGAGGATAGGGatgaaaaaattctttcatatcaaactttaaattatg
ttaaataattatttctaaaaaaatatctACAATTTATTTTAAGTTTATTG
ACCCATGTTTTTTCACATTCATAGGGTTATGCCCTGCCATATAAATATGC
TAGATAAGTTTAGACTTTGTATTTATCTCTCGAAACTATACCAGTGGGTA
CCCCTTAAACCTACAAGTAATAGAGGTACCCTCTATCTGAAAATTTAGGT
GGAatttgaggctgaaactttttgtgttgaaagtacgctGTCAATGGTTT
TCTTCCCTAGTAGTGATGTTTCGTAGAaaccagttttcagtttttcatga
aaaaatgtccttttgacaaaatggtttttctcgaataactttttataaaa
tagtccgtttggtctaaaattttatacagtgattcactgcaaagttacta
CCGTTACAATTGGATCATTGGTACCTAAATACtttcaaaactgtacgtta
aaatcaaaatatgccTTAAAATCTTCACTATTACatcttaaaacctacaa
acattgACCCCTTACTCACAACATACTGAGACTGTGAAATTGCAATCCAG
GTGCTAAAccgtgattcaattgatcaaatacttgctgGAAATCCATTCCA
Aaaacaatacacgtttttttttataagaacatcgaaaattttcgaagcct
tcggatgttcttagttttttgaatttgaagcctaaaaatgttcttaaaat
tttcttattttcagcattttttgagcattttgatgtaatttcttaagaaa
ttgcatgtttttaagtctccaaagccttagtatgttcttagaatgttctt
aaatttttgggctcgaagccttatgttcttatatagtttgttcttataaa
aaaaaaacgtgtatttgtatttttcaggatttcatacCCATAATACAATT
GcacttgtttttttcttcaaaaaacgaCCTTGAagggtcaaaacttttat
taacttcatttttgacgtatggtactaatgtttttctaaatctccatcga
atttgtgacattttggtatacagaatgaccaggttttgagaaagtcgatt
tccAGATTTTATTGGCCACTACTATAATGAGCCTTGAAATAGAACTTTCA
GGGCCTTACGATTTCGGTTGAGTCTAatcatgaagaagaaaatgattttt
ttcatacctaccataaATAGGTACCTAAAAAGTATCGGTTTTATGACTAT
AAACTCAATTGTGCAATCTCTAGGTTCGAAaaacttgaattttcaaataa
cttcgaattttacgATACTTCGCGATAATTGAATTCTcgaaattaggtat
tttatgaaag Run BLAST on NCBI transcript from alignment at scaffold_487:38204..41660- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068699 ID=TCONS_00068699|Name=TCONS_00068699|organism=Clytia hemisphaerica|type=transcript|length=3457bp|location=Sequence derived from alignment at scaffold_487:38204..41660- (Clytia hemisphaerica)
ATTTGATACGTGCTTTACTGTATCAAATTGGTGTTAAAAGTGGTGAGTTA
TGGTTTGAGTGTCAATATTATGAACTTTGAACTGAGTTGGTTTAGAACGC
CATGTTTTGAATTGAAAGATTTTTTACTTCAAGGGAAAATATATTGTCTC
GATTGATTTGAGTTTCCACCCATTGAATTCCAAGCCCGAAGGGCTAGACT
CGAGACTTCTGGATGAGAAACGAAGCCATTTATTTCCCATTCAGAACGCC
TGCGCCGTGGTTTATACACAAAAGCTAGACTGAAATCAAAACCTATCGCT
AGATTTCAAAAACTGCACTTCTTAAAAACAAAGGAACCTCTAGACCCGTC
GTCATGATTGCGGCGCGTTCTTGGCGCGTTCTGGCGATGGGAAATAAGTT
GGCTTCACTTTTTCTTGCCCGGGAAAGGTTAGAGATTCTACTCTAGCCCT
TTGGGCTTTAAACTCAATGTACCCTCCCCTTCTTTCACCTCTGTTTAGCT
GACCAAGTGAAAAGTTATTCTCATTATTAATTTTCAATCATTTCTTGTTC
GGAAATATTTATTTAAACAGTATGATCAATCAACATAGTATCCATGTTAT
TTTTTAATTGAGAACCCCACAAAATTTTGCCTTCTACCTATGCGTCATGT
TTTACAATTAGGAGTGAGAGTTTAGTGTTATTTTCCTTGGGGATGATAAT
TCGAGTTCTTTTCTGAAATGTGATCGAATTTTTTCCTGTTTGAGAAAATA
AATTCTAATTTTATCGCACTGTCTTCTTTACTCCAATTTTTTATTCTTAC
TAAAAATAATCAAAAACAAATTCTCACTGCACGATGTTGTGTTGTTTTCC
ACACTGGATTTTCTCCTTTGAAAACAATGGAACTCAAATCCCCAGGGAAT
GTCAATCCCCATCAGTTATTTATCCACTGGCTGAAAAAACCCAACTAGGT
CTGTGTGAGAAGGGGGTGTATGTTAGAGAGCACACCTGTTTGTGACAAAA
ACTTTTGAACTAAATATGCATTTATACCATTTTTTCTAGATCATCAAGTA
TTGAAAGAAAATGAGTAGCTCATCAGAATCTGAAGATCCATCATTAACAG
GAGATGCAACGCGAAGTGAAACCAAGATCGCTTTTGTAATCGTTGGAATT
GTCATCTTGTTCATTCTTGGTGTTGGAGTTTATATCGTGTATAAGTTTTA
CAAAAGGAGGAAAAGGCTATTGAACAATAATGAAGTTTTACAGAGAGATC
ATGATATCAAAACAAGCATGGAACCTTTACCAAGTTGAATGGAAAGTGAT
ATCTGGATGGAAGAGGGCTCTGGTTGAACGAGAAGGAATCTCCAATTGGA
AGGTATTCAAGATCTACGGAAGAAGAAGTCTTCACAGCTTTTGGATTTAA
AATCATTAAAATGAGACAATGGTACATCAAAGAATAAGTTAGACCTTTAC
CAAGTTTGATGGTGATTCATTTGTTGAACCGAATAAAACCATAGAATGGA
CATTGGATGCTGAACTTGTGGCTAGCCTGTCTACATTATTATGTTGCATT
GACATGTGAGTTCACCAACCAGCGAATTTATGTATTGGCATCATCATTCC
ATTCATTAGAGAAGCAAGTTGTATTTGTGATATTCATGACGCAATATTTT
TTTCTTCTACGGAAACTCCCCGTTCTTTTCCGTTCAAAGTTTGCCACTAC
TGGAAAAAACCGAGGTGTTTCCTTAAAAACATTACCTCGTGGATATCATG
AATTGTGGTTCTGTGTTCCACGGTGTAATTTTTGGTAATCATGAAACCTA
AATGAAATCGGCAACTCGTGGTTAAGTTTTGTTGAAGCTAAGAAGGTCAA
TGTGTTTTTTTAGTCATACGTCATTGTATGTAAACAAGGAACATTGATGT
CAATTAGACTGACTGTATGACGGAATGGAGGAGAGCTTATTATATGAAGC
AGCAGAAAAGTTATTTTTCACTAAGAAGCCGCAAACACTTGTAAAGCTTT
GATCTGGCTCTTGACAATATCCAGTTAACAAAAATAATAAAATTCTTCGT
CAAACAGAACAAAACTTGCGACATTGAACTTACGAGTAGAAGTTTTGTTT
CGAGGATAGGGATGAAAAAATTCTTTCATATCAAACTTTAAATTATGTTA
AATAATTATTTCTAAAAAAATATCTACAATTTATTTTAAGTTTATTGACC
CATGTTTTTTCACATTCATAGGGTTATGCCCTGCCATATAAATATGCTAG
ATAAGTTTAGACTTTGTATTTATCTCTCGAAACTATACCAGTGGGTACCC
CTTAAACCTACAAGTAATAGAGGTACCCTCTATCTGAAAATTTAGGTGGA
ATTTGAGGCTGAAACTTTTTGTGTTGAAAGTACGCTGTCAATGGTTTTCT
TCCCTAGTAGTGATGTTTCGTAGAAACCAGTTTTCAGTTTTTCATGAAAA
AATGTCCTTTTGACAAAATGGTTTTTCTCGAATAACTTTTTATAAAATAG
TCCGTTTGGTCTAAAATTTTATACAGTGATTCACTGCAAAGTTACTACCG
TTACAATTGGATCATTGGTACCTAAATACTTTCAAAACTGTACGTTAAAA
TCAAAATATGCCTTAAAATCTTCACTATTACATCTTAAAACCTACAAACA
TTGACCCCTTACTCACAACATACTGAGACTGTGAAATTGCAATCCAGGTG
CTAAACCGTGATTCAATTGATCAAATACTTGCTGGAAATCCATTCCAAAA
ACAATACACGTTTTTTTTTATAAGAACATCGAAAATTTTCGAAGCCTTCG
GATGTTCTTAGTTTTTTGAATTTGAAGCCTAAAAATGTTCTTAAAATTTT
CTTATTTTCAGCATTTTTTGAGCATTTTGATGTAATTTCTTAAGAAATTG
CATGTTTTTAAGTCTCCAAAGCCTTAGTATGTTCTTAGAATGTTCTTAAA
TTTTTGGGCTCGAAGCCTTATGTTCTTATATAGTTTGTTCTTATAAAAAA
AAAACGTGTATTTGTATTTTTCAGGATTTCATACCCATAATACAATTGCA
CTTGTTTTTTTCTTCAAAAAACGACCTTGAAGGGTCAAAACTTTTATTAA
CTTCATTTTTGACGTATGGTACTAATGTTTTTCTAAATCTCCATCGAATT
TGTGACATTTTGGTATACAGAATGACCAGGTTTTGAGAAAGTCGATTTCC
AGATTTTATTGGCCACTACTATAATGAGCCTTGAAATAGAACTTTCAGGG
CCTTACGATTTCGGTTGAGTCTAATCATGAAGAAGAAAATGATTTTTTTC
ATACCTACCATAAATAGGTACCTAAAAAGTATCGGTTTTATGACTATAAA
CTCAATTGTGCAATCTCTAGGTTCGAAAAACTTGAATTTTCAAATAACTT
CGAATTTTACGATACTTCGCGATAATTGAATTCTCGAAATTAGGTATTTT
ATGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068699-exon-scaffold_487-1575043694:41619..41660 | TCONS_00068699-exon-scaffold_487-1575043694:41619..41660 | Clytia hemisphaerica | exon |
| TCONS_00068699-exon-scaffold_487-1575043694:38204..40621 | TCONS_00068699-exon-scaffold_487-1575043694:38204..40621 | Clytia hemisphaerica | exon |
| TCONS_00068699-exon-scaffold_487-1510915933:41619..41660 | TCONS_00068699-exon-scaffold_487-1510915933:41619..41660 | Clytia hemisphaerica | exon |
| TCONS_00068699-exon-scaffold_487-1510915933:38204..40621 | TCONS_00068699-exon-scaffold_487-1510915933:38204..40621 | Clytia hemisphaerica | exon |
| TCONS_00068699-exon-scaffold_487-1491911889:41619..41660 | TCONS_00068699-exon-scaffold_487-1491911889:41619..41660 | Clytia hemisphaerica | exon |
| TCONS_00068699-exon-scaffold_487-1491911889:38204..40621 | TCONS_00068699-exon-scaffold_487-1491911889:38204..40621 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_487 | supercontig | scaffold_487:38204..41660 - |
Blast
The following BLAST results are available for this feature:
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