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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068698 ID=TCONS_00068698|Name=TCONS_00068698|organism=Clytia hemisphaerica|type=transcript|length=297bp
AAAAGATATCGGCCTGTGCTGAGAAGTTTGATTACTCCTTTTCAGAAAGG
GTTGATGGTACTCTCAGCAATGACGAAAGAAACAACATAATGAATAACAT
CggagaaaataaatatatattcTTTGATAACGAAGTGGCCCACCAAGACT
TGCTTGAGCGAGTTGGAAGGGATTATGTGGGTGATTGTGGTGATTACTAT
GAGACTTAATATTGTAGttagttttttatcaaatatttattTGTCATCGA
CATTTTTATCATAACCCtattattaaaaaagaagaatgaacttggaa Run BLAST on NCBI transcript from alignment at scaffold_487:137064..138683+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068698 ID=TCONS_00068698|Name=TCONS_00068698|organism=Clytia hemisphaerica|type=transcript|length=1620bp|location=Sequence derived from alignment at scaffold_487:137064..138683+ (Clytia hemisphaerica)
AAAAGATATCGGCCTGTGCTGAGAAGTTTGATTACTCCTTTTCAGAAAGG
TAAAATCATTGATAATTACTCTCTCATTACTTCCCTTCTCCAAAATAACC
TTATTAAGGCTTTTCGATACAATTTTGAATCTAACACAATGAATATATTT
CTGAAGGGATGAGATAACGGTTTGATTATTACCTAGTAAACCCCAGTATC
GTCAGTGGCCAATGGCATAAAATAAAGTGGATTGCTTTTAATATGGGTAC
TGATATTACATAACTTTCAGGTTACCAAGTATAGTGCAGATCATGACTCA
AGATactaaaaattcttcaaatggAATGAGGGGTTTGTAAATATTTCCAA
TAATAGGGATAAAGTCACATGGTGTTTTTAACACCGGAGACGATTCGGGA
GGCCTTACCCATCTAGTCCAAGACACGTATATATCATTATGGAAATGATC
TCTATCAATATCTACTTTTCCATTTTAGGGTTGATGGTACTCTCAGCAAT
GACGAAAGAAACAACATAATGAATAACATCggagaaaataaatatatatt
cTTTGGTAAGTTGACCATATCTTTCTcgtttgattgataaaaaaattaca
aaaaatcagaTCTGATTTGCGGAAGAGCAAAAAAAAggttgcaaaaacta
ataaatgaAGCCCTACAGCTATGGTAGGTCAAGTTCGTTAAATTGAGTAG
TCTATCcctaacacccctttctcagtgacccggtgagagTTTTAAGCTAG
TGTGGATAACTTGAAGGTgctaaaattccaaaaagggTTGAAGAACTTTT
GTTGTTATGGATATAAGTTTTAGCTTAACAGCTCATACATTCAGTGCACt
gtccaaaaatttcaaagtttttctcgATTAGAGATGGGATTTCGGTGAAG
AATCCCACTAGGGATGAAATTTAATGGTATTTTTATCACAGGGATAACAT
TTGttaaaaagttactttttaGCCGATTTCTGTAGTGGGGAGGGGAGTCA
CCGGGTCTGCAAAGTTTCCTAATTTTAAATTCGAGAAAAAGGAGGGAAAA
TTAAAGAGATCGTTATATTATCATAAAAACCCGACAGCATTCCCTCAACG
GGAAGAAACATGAGGATAATGTTATCCGGGAAAAATGtttgttgttgaaa
aattcATTCACATCAAGAAATTTCGGGTATATTCACTTGCATTTGCTCga
tcatttttcaaattacCAATGTCTCCAAAACTAACTTTTAGAATACCGTA
GATGCACGGTTATACGTTTTaatcatttaaaacaaaatcatttaatATTG
CATTTTAACCTTAGATTTGGCAAAATAGAGTTAAAttacgaaaaaatatt
ttggtcagtGTAATTGAAGGCCGTGAAATGTTCCCTGGTAAAATTTAACT
ATGGAATTATACATTTTTGTgattcttttattatttttttctactttagA
TAACGAAGTGGCCCACCAAGACTTGCTTGAGCGAGTTGGAAGGGATTATG
TGGGTGATTGTGGTGATTACTATGAGACTTAATATTGTAGttagtttttt
atcaaatatttattTGTCATCGACATTTTTATCATAACCCtattattaaa
aaagaagaatgaacttggaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068698-exon-scaffold_487-1491911889:137064..137112 | TCONS_00068698-exon-scaffold_487-1491911889:137064..137112 | Clytia hemisphaerica | exon |
| TCONS_00068698-exon-scaffold_487-1510915933:137064..137112 | TCONS_00068698-exon-scaffold_487-1510915933:137064..137112 | Clytia hemisphaerica | exon |
| TCONS_00068698-exon-scaffold_487-1575043694:137064..137112 | TCONS_00068698-exon-scaffold_487-1575043694:137064..137112 | Clytia hemisphaerica | exon |
| TCONS_00068698-exon-scaffold_487-1491911889:137542..137618 | TCONS_00068698-exon-scaffold_487-1491911889:137542..137618 | Clytia hemisphaerica | exon |
| TCONS_00068698-exon-scaffold_487-1510915933:137542..137618 | TCONS_00068698-exon-scaffold_487-1510915933:137542..137618 | Clytia hemisphaerica | exon |
| TCONS_00068698-exon-scaffold_487-1575043694:137542..137618 | TCONS_00068698-exon-scaffold_487-1575043694:137542..137618 | Clytia hemisphaerica | exon |
| TCONS_00068698-exon-scaffold_487-1491911889:138513..138683 | TCONS_00068698-exon-scaffold_487-1491911889:138513..138683 | Clytia hemisphaerica | exon |
| TCONS_00068698-exon-scaffold_487-1510915933:138513..138683 | TCONS_00068698-exon-scaffold_487-1510915933:138513..138683 | Clytia hemisphaerica | exon |
| TCONS_00068698-exon-scaffold_487-1575043694:138513..138683 | TCONS_00068698-exon-scaffold_487-1575043694:138513..138683 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_487 | supercontig | scaffold_487:137064..138683 + |
Blast
The following BLAST results are available for this feature:
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