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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068697 ID=TCONS_00068697|Name=TCONS_00068697|organism=Clytia hemisphaerica|type=transcript|length=483bp
CGTAAATCGAGACAGGTCTTTGAAAGTAGAAGGAAAACCGCTTTTGGCAG
ATCCTCTAtaaatttcttgtaaatttAGGTCAATAGCTCGAAACAATGTT
TGCCACATAGGGGGTggagatttttttctaaataatttgGTTGGAACTTT
GCAtatgaaaaagatttcaaaataatttcatcaaGAATTTCCATGGAAAG
TCGATCATTAGAGACAAGCACTTCCTAATATACAGGGTTGATGGTACTCT
CAGCAATGACGAAAGAAACAACATAATGAATAACATCggagaaaataaat
atatattcTTTGATAACGAAGTGGCCCACCAAGACTTGCTTGAGCGAGTT
GGAAGGGATTATGTGGGTGATTGTGGTGATTACTATGAGACTTAATATTG
TAGttagttttttatcaaatatttattTGTCATCGACATTTTTATCATAA
CCCtattattaaaaaagaagaatgaacttggaa Run BLAST on NCBI transcript from alignment at scaffold_487:136600..138683+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068697 ID=TCONS_00068697|Name=TCONS_00068697|organism=Clytia hemisphaerica|type=transcript|length=2084bp|location=Sequence derived from alignment at scaffold_487:136600..138683+ (Clytia hemisphaerica)
CGTAAATCGAGACAGGTCTTTGAAAGTAGAAGGAAAACCGCTTTTGGCAG
ATCCTCTAtaaatttcttgtaaatttAGGTCAATAGCTCGAAACAATGTT
TGCCACATAGGGGGTggagatttttttctaaataatttgGTTGGAACTTT
GCAtatgaaaaagatttcaaaataatttcatcaaGAATTTCCATGGAAAG
TCGATCATTAGAGACAAGCACTTCCTAATATACAGGTAAAGAATTATTTC
CTTTTTACGAATTTTCCCCGTTTATGAAAAAAGCCAGTCGTGATAAAACC
TGAGACTTCGAAAAAAGAATTCCTACTGTGAAAATGTTGTTCGTGTTTTA
CGGGGCCCTTAATTAGATTCATCCACAGCTTGCCCATCTGCCATCTTTTA
AACACTAATTGGATCGTTCAAACCGACACAGAAAGCTTACTTGAGCCCCC
CTCGTTCTTTCTCTAAAAGATATCGGCCTGTGCTGAGAAGTTTGATTACT
CCTTTTCAGAAAGGTAAAATCATTGATAATTACTCTCTCATTACTTCCCT
TCTCCAAAATAACCTTATTAAGGCTTTTCGATACAATTTTGAATCTAACA
CAATGAATATATTTCTGAAGGGATGAGATAACGGTTTGATTATTACCTAG
TAAACCCCAGTATCGTCAGTGGCCAATGGCATAAAATAAAGTGGATTGCT
TTTAATATGGGTACTGATATTACATAACTTTCAGGTTACCAAGTATAGTG
CAGATCATGACTCAAGATactaaaaattcttcaaatggAATGAGGGGTTT
GTAAATATTTCCAATAATAGGGATAAAGTCACATGGTGTTTTTAACACCG
GAGACGATTCGGGAGGCCTTACCCATCTAGTCCAAGACACGTATATATCA
TTATGGAAATGATCTCTATCAATATCTACTTTTCCATTTTAGGGTTGATG
GTACTCTCAGCAATGACGAAAGAAACAACATAATGAATAACATCggagaa
aataaatatatattcTTTGGTAAGTTGACCATATCTTTCTcgtttgattg
ataaaaaaattacaaaaaatcagaTCTGATTTGCGGAAGAGCAAAAAAAA
ggttgcaaaaactaataaatgaAGCCCTACAGCTATGGTAGGTCAAGTTC
GTTAAATTGAGTAGTCTATCcctaacacccctttctcagtgacccggtga
gagTTTTAAGCTAGTGTGGATAACTTGAAGGTgctaaaattccaaaaagg
gTTGAAGAACTTTTGTTGTTATGGATATAAGTTTTAGCTTAACAGCTCAT
ACATTCAGTGCACtgtccaaaaatttcaaagtttttctcgATTAGAGATG
GGATTTCGGTGAAGAATCCCACTAGGGATGAAATTTAATGGTATTTTTAT
CACAGGGATAACATTTGttaaaaagttactttttaGCCGATTTCTGTAGT
GGGGAGGGGAGTCACCGGGTCTGCAAAGTTTCCTAATTTTAAATTCGAGA
AAAAGGAGGGAAAATTAAAGAGATCGTTATATTATCATAAAAACCCGACA
GCATTCCCTCAACGGGAAGAAACATGAGGATAATGTTATCCGGGAAAAAT
GtttgttgttgaaaaattcATTCACATCAAGAAATTTCGGGTATATTCAC
TTGCATTTGCTCgatcatttttcaaattacCAATGTCTCCAAAACTAACT
TTTAGAATACCGTAGATGCACGGTTATACGTTTTaatcatttaaaacaaa
atcatttaatATTGCATTTTAACCTTAGATTTGGCAAAATAGAGTTAAAt
tacgaaaaaatattttggtcagtGTAATTGAAGGCCGTGAAATGTTCCCT
GGTAAAATTTAACTATGGAATTATACATTTTTGTgattcttttattattt
ttttctactttagATAACGAAGTGGCCCACCAAGACTTGCTTGAGCGAGT
TGGAAGGGATTATGTGGGTGATTGTGGTGATTACTATGAGACTTAATATT
GTAGttagttttttatcaaatatttattTGTCATCGACATTTTTATCATA
ACCCtattattaaaaaagaagaatgaacttggaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068697-exon-scaffold_487-1491911889:136600..136834 | TCONS_00068697-exon-scaffold_487-1491911889:136600..136834 | Clytia hemisphaerica | exon |
| TCONS_00068697-exon-scaffold_487-1510915933:136600..136834 | TCONS_00068697-exon-scaffold_487-1510915933:136600..136834 | Clytia hemisphaerica | exon |
| TCONS_00068697-exon-scaffold_487-1575043694:136600..136834 | TCONS_00068697-exon-scaffold_487-1575043694:136600..136834 | Clytia hemisphaerica | exon |
| TCONS_00068697-exon-scaffold_487-1491911889:137542..137618 | TCONS_00068697-exon-scaffold_487-1491911889:137542..137618 | Clytia hemisphaerica | exon |
| TCONS_00068697-exon-scaffold_487-1510915933:137542..137618 | TCONS_00068697-exon-scaffold_487-1510915933:137542..137618 | Clytia hemisphaerica | exon |
| TCONS_00068697-exon-scaffold_487-1575043694:137542..137618 | TCONS_00068697-exon-scaffold_487-1575043694:137542..137618 | Clytia hemisphaerica | exon |
| TCONS_00068697-exon-scaffold_487-1491911889:138513..138683 | TCONS_00068697-exon-scaffold_487-1491911889:138513..138683 | Clytia hemisphaerica | exon |
| TCONS_00068697-exon-scaffold_487-1510915933:138513..138683 | TCONS_00068697-exon-scaffold_487-1510915933:138513..138683 | Clytia hemisphaerica | exon |
| TCONS_00068697-exon-scaffold_487-1575043694:138513..138683 | TCONS_00068697-exon-scaffold_487-1575043694:138513..138683 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_487 | supercontig | scaffold_487:136600..138683 + |
Blast
The following BLAST results are available for this feature:
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