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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068695 ID=TCONS_00068695|Name=TCONS_00068695|organism=Clytia hemisphaerica|type=transcript|length=2067bp
GGAAAAACCTGACGAACAGTACATtacaaaaatgaagtttctgtAGTTAG
ATTTACAAACAAATTATCGTATTTTGAATGTTGTGTTTGGGAGTTGGtat
caaatatattttctgTTTTGAAAAGAGTATCATACAGTTATGGCAACTGT
AAATGAGTTCGTCACATCAAACGGTGTTGCCAGCTATGCAACTCCTAACA
AAAAAGTTGGTAAGTACCTGCTAGTTGCTGGCAATCCAGGAAGCGGAAAA
AGTACCGTATTGAATTGTCTTATGCAATCAAGAAGCTCTGAGATGCTTCA
AGAAGATCAGAGATTCCAATCTGGTGTTTCCATCGGATCTGGCATGACTT
ACCAACTTGATGTCAAAGAACTGAATGGAATCGTTTATATGGATACTCCA
GGATTGGATGATATCGATAAACGAAAACAAGCAGCTGAAGCAATCACACA
AGCTTTAAAGAGAGATGGATCTTACCAAATCATTTTCGTTGTTACTTTAG
AAGCTGGAAGAGTCAgaccagctgacgtggcaacaATCAGCTTGATCCTT
GATAGCGCACCAGAAATTACCAATTACGGCGTTATCTTCAACAAATTGTC
CAAACCTGTTTTACGAGAGCTTACCAAAGAAAATAAACTATCTTTGCTGA
CTCAAGTATCTGCTCGAACGACCGAAGGAAAAAAGAAGCCGCTACCTATT
CCACTTTATCTCGAAAAAAACAGTGATCTTGAAGATGAGAAGAATGCCAT
TGCTTCGTTACCAGGTTTGGAAGAATATGTTTTGTGTTTGGCACCTATTG
TTATCCATAGTAACCAAGTTGATGACATCCCCGCAGAGAGTTTCGATAAC
ATCAAAGCCAAGTTAGAAGAGCAGTTGGATTATTACCGAAAGAATCAAGA
AGCAATGAAATACCAGATGGAGGAGGATCGGAAGAATTTCAAACGACAGT
ACGATGAGATGCAAGTTGAGAATGAGCGAAGACACCAACGTGAAATGCAG
GAGATTGAACGGAAAGAGAAGCAACACCAACACGAGATGAGAGCTTTGAA
GGAGCAAAATGATCAGAATCTAAAAGCGATTAAAGTGAATTTCCAACGAG
AAAATGAAGCAGCGAGAGCAGAAGCACAAAGAAGAGAACAAGAAATGGCC
AGGTTGAAGGAGAATTTTGACGAGATGAAAATTCAAGCTGACCAGAGAGA
ACAGGAGAAGAGACAAGCTGAGATGGAGGAAGAGCGAAGACGACTAGAAG
CTAGTCTAGAAGAAGAGAGACGACAGAAGGAGTACGATGAAAGGCTAGCC
AAAATGCAAGCTGCTCAAGAAAGACAGGTCAAAGAATTGCAACAGAAAAT
CGAAGATCATCAAAAGGAAAAGGCTAGAATGGAAGAGGAAAATAAAACAC
GGATCGTTGCGTTGGAAAGTAAAAAGGAAGACAATGGAATTTTGGATCAG
ATCGTGAATGCATTTGCAGGAGCGGTAAAAGGTGTTGCCAACTTCTTTGG
GATAAAGTTTTGAGATGAAAGACGAAATCTTGGTAGAACTATCTTGCAAT
TTGGATTATATTAAAATTTAGATCATCAAACGGTattgctaatttttttg
gtaaaaaaatttaaGACAAACTTGGAAGCgataaaaaaacttaatttaaa
TCTTGGTAAAACTTAAAAGACCTTGCAATTTTAACTGACGAAAAGGACAA
ATTTTATTGAGATGTACGTATATTACCAAACAGTATTGctaattttttgg
taaaaaaaattaagggAGACTTACAAGAGATGAACAGCAATCGAAATCTT
GGTAAAGCATTCTTGATATTCTGGATGAAAGTGGACAATGGTATTTaata
caaataaaaacattttcaatacaCTTACTGAAATATTATAATTTGTTATT
cttaagcattattttttcaatatcttACTTCatggccgggtagctcagtc
ggtagagcattcacTTTACAATCtcagggttgtgggttcgatccccggtc
accgccaactcagcggatgagtagcttagattgggtaatctgatctaggc
ggtaagttactgggagc Run BLAST on NCBI transcript from alignment at scaffold_487:94309..99522+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068695 ID=TCONS_00068695|Name=TCONS_00068695|organism=Clytia hemisphaerica|type=transcript|length=5214bp|location=Sequence derived from alignment at scaffold_487:94309..99522+ (Clytia hemisphaerica)
GGAAAAACCTGACGAACAGTACATtacaaaaatgaagtttctgtAGTTAG
ATTTACAAACAAATTATCGTATTTTGAATGTTGTGTTTGGGAGTTGGtat
caaatatattttctgTTTTGAAAAGAGTATCATACAGTTATGGCAACTGT
AAATGAGTTCGTCACATCAAACGGTGTTGCCAGCTATGCAACTCCTAACA
AAAAAGTTGGTGAGTTCGAACTACATTTTCTTCTAAGCACCAAAGAAATT
GTGAGGAAACTTTTTGGGAACACATAATCAAAGGAACTAAACTGTGCCCG
TGtatatttttgcttaattttttgttgtttctagTTGTCAATAATAAAAC
CAGGGGTACTAGGGTTCGTACCCGGGGTTCGCACCTGACTAGATTGACGT
GAAAGGTGCCAGTGGTAAAACAATTCTCTAGAGGAAAAAACCTATAGTAG
TAAAACATAGCCAAAGTCACTTCAATGTGTGCcattttgtttataatttt
ggCTTTTCTCTGTCATTTTTAGTAAAttgatagaacttatcaagggtccc
cttTTACTATCggttttttcgaaatctgaaaatcaaatatctgagactac
caacggattcagcgtgaaaagtaggtATATAAAAtagggttatttgttaa
gtctCGAACCTGGCGCCGAGAAATTGCATTTTTGAGGCGAATTATCGATG
TTTTGGGTGTTTTTcgttgacgtcagcattttcctaggagcattttcaga
aaaaattattcCTACAGacggatagccctgaattagtagtatccaaaaat
ggtatggtttgtcagctttcgatgtctagatctcgagatacaTTGAAAAt
catcgatattttttgctgagtcagcatttttcagcatatttatccACCTT
AAGAATGGATTATCTCGAGATTtagacatcgaaagttaacagATTTAGAG
CAATGATTCACAAAAATGGAGGATTCCTAGTGAGAtaacaaaatagtgaa
aagCGATATTGCTCATTGAGAATTAGCTAATGCCAATTGAAATGTCAACT
GAAAGCAAAATGTTTTCTTCAAGGTGGTGGAGTAGAATCCAGTCTTTTTC
TTCCACCATAGTTTTCATTGGTAATCCAGGCGTGGGAAAAAGCACGTTAC
TCAATTGTTTGGTCGGAAAAGCCGTCTTCAAAAATGGCATCAACATTGCA
ATCGGACTAACGAATCAACTACAAACGATAAAATCCAAGGGAGTTACTTA
TTGTGATACGCCAGGTTTGAAAGACATTGAAATGCAAGAGAAGTCTATGG
AAGCTATCCTTCAAGCCTTGCAACAAGGAGGAAGATATTTCGTAGCTTTT
GTCATCACGTTGGAATCTGGCCGTGTCAAACCTGAAGACGTATCAACCAT
TGAAGCCGTCCTCGAAAGTGCTCCGGATATCACTAGCTTCGGGTTGATCA
TCAACNATTGAAGCCGTCCTCGAAGGAGCTCCGGATATCACTAAATTCGG
GTTGATCATCAATAAAGTATCAAATGCCGTACATAAAGAACTTTCATCAG
ACGACGACAAAGTGAAGCTACATTGTGATATCGTGGAAGAGCAAATATTA
AGGAATGTCCGTGGGAGGCGACATCCGACTGTTCATCTTGTTCCGAAATA
TACTAATTTGGAAGACGAGTCGGATTTGCACATGGAGCTGCCTAAGTTAA
GCAAATTCATTGAAAATTCATTAAAACTTCGTAGCGTGACCATACTTAAG
GAAAACGTGAATACGGCATTTACGTTAACACGGTACCAGACAGCTTACGA
GAGAGAACGGGACGAAATCCAGCGGTTTAAATTAGAACAAAAAGCTATGG
AGAAAATGCGACGCGACGATAAAAGAATGTACGAGAAACGTCTTTGCGAA
CTAAAAGAACGGGATGAGAGACGTCAAGAAGAACGTGAACGTAAACAAAG
AAAACAAGAGGAAAGGATTCAGAAAGAGAACCTGGAAATGGAAAGGGACT
TTCATGAAGGACTAGTAGACATTTTAGAACAACAGGAATTAGATAGAGCT
TTAACACAAAGTCTACtggaattttgatattttctaaaGAACCTAAAGTA
AAGTTCATTCGTTTTGATAAACTTTATTTTGCCCATGCCAAGGGGGCTTA
ATTTTAAGTTTAATTGTGGTTTTCACATGGTGGTAAATAGATTGCAAATT
TTAAGCGAAAAGACTTTAGACTTTTAacttttggacattttctttgtAGT
TCCTTTATATCAAGTATTTATGAaagcttttaaattttcaaaaaaagatt
attttgatCACGTTTAGTACTTCCAAAATTCTGCTTTAACGGTTCCTAGA
TAAGACAATCAAGACAGGTGTGGGTTGGACATACACGAATCTAATCTCCT
TTGAAGAacgaaaatcttttaaaagcaTTTAGTTTTCCTCTTACCAAAAT
CATTCCGAGCTTCGGAATCAAGATGGATTCTGAAAAAGATTACAACTAAT
TTTAGCTAATAtaagttttttatcattttctaaaTTCACCCTTTTAATAA
AGGCAAGAAGGAAATACCttaaaagaattaatttcagcaTGAAATAATCA
GCAGTTTCTCAACATTTTCCAAACTGAACcttgatttattttttggggaa
aaagGGTAAATTTACCCTACCGTCGCCAAAATTAGTGTCCGCATTCTTGT
TTTcgaattttgtcaataaaaaaataataattcccAACTGACAAGAACAA
ATTTACAATTATTACAAGATATATTTCAATAGAGGTTTCCATGTTTTGTT
AATTTCCGccaagcaaacgttcgaatctgtagagacGACCCCTTACACAA
GTcaaacgtttgcttccataatggcggaagttaCGTAATGTAACGTTACG
TAAGTCAACAAAACGTGAAAGACCTTATTCTAATTTTACTCTTTAGGTAA
GTACCTGCTAGTTGCTGGCAATCCAGGAAGCGGAAAAAGTACCGTATTGA
ATTGTCTTATGCAATCAAGAAGCTCTGAGATGCTTCAAGAAGATCAGAGA
TTCCAATCTGGTGTTTCCATCGGATCTGGCATGACTTACCAACTTGATGT
CAAAGAACTGAATGGAATCGTTTATATGGATACTCCAGGATTGGATGATA
TCGATAAACGAAAACAAGCAGCTGAAGCAATCACACAAGCTTTAAAGAGA
GATGGATCTTACCAAATCATTTTCGTTGTTACTTTAGAAGCTGGAAGAGT
CAgaccagctgacgtggcaacaATCAGCTTGATCCTTGATAGCGCACCAG
AAATTACCAATTACGGCGTTATCTTCAACAAATTGTCCAAACCTGTTTTA
CGAGAGCTTACCAAAGAAAATAAACTATCTTTGCTGACTCAAGTATCTGC
TCGAACGACCGAAGGAAAAAAGAAGCCGCTACCTATTCCACTTTATCTCG
AAAAAAACAGTGATCTTGAAGATGAGAAGAATGCCATTGCTTCGTTACCA
GGTTTGGAAGAATATGTTTTGTGTTTGGCACCTATTGTTATCCATAGTAA
CCAAGTTGATGACATCCCCGCAGAGAGTTTCGATAACATCAAAGCCAAGT
TAGAAGAGCAGTTGGATTATTACCGAAAGAATCAAGAAGCAATGAAATAC
CAGATGGAGGAGGATCGGAAGAATTTCAAACGACAGTACGATGAGATGCA
AGTTGAGAATGAGCGAAGACACCAACGTGAAATGCAGGAGATTGAACGGA
AAGAGAAGCAACACCAACACGAGATGAGAGCTTTGAAGGAGCAAAATGAT
CAGAATCTAAAAGCGATTAAAGTGAATTTCCAACGAGAAAATGAAGCAGC
GAGAGCAGAAGCACAAAGAAGAGAACAAGAAATGGCCAGGTTGAAGGAGA
ATTTTGACGAGATGAAAATTCAAGCTGACCAGAGAGAACAGGAGAAGAGA
CAAGCTGAGATGGAGGAAGAGCGAAGACGACTAGAAGCTAGTCTAGAAGA
AGAGAGACGACAGAAGGAGTACGATGAAAGGCTAGCCAAAATGCAAGCTG
CTCAAGAAAGACAGGTATTTATTATGAATTGTAACAAATATTTTCAGTGG
CCGTTTTCGATAGATACTCAAGCTTTTAGTTCCCCTTTAATGCTGTTTTA
GAATATTTATGCAGAAATAACGTGGATAGTATGATAAGGATAGGGGAGGA
TTTTATTCATATGTGTCGAGAAAGATGGCcaagaaattttcatgatacAG
TCtagcctctataactcgaacactaACGAGGAATgtaaacttgttcgagt
taaggaaagtTGTAGAGGTTTGAATTAGGGAGACTCCATTGTAATACAGC
AACTGCTGTGGAAACCCATCTCAATGTATGTATTGTGAGAGTAGTCCAAT
CAATCTCCTTTTCTTATTCAAGCTAAAATGTCAGCTTCACTTCAAAACAA
CGTTTGTTTTCCTATTTTTTAAAGGTCAAAGAATTGCAACAGAAAATCGA
AGATCATCAAAAGGAAAAGGCTAGAATGGAAGAGGAAAATAAAACACGGA
TCGTTGCGTTGGAAAGTAAAAAGGAAGACAATGGAATTTTGGATCAGATC
GTGAATGCATTTGCAGGAGCGGTAAAAGGTGTTGCCAACTTCTTTGGGAT
AAAGTTTTGAGATGAAAGACGAAATCTTGGTAGAACTATCTTGCAATTTG
GATTATATTAAAATTTAGATCATCAAACGGTattgctaatttttttggta
aaaaaatttaaGACAAACTTGGAAGCgataaaaaaacttaatttaaaTCT
TGGTAAAACTTAAAAGACCTTGCAATTTTAACTGACGAAAAGGACAAATT
TTATTGAGATGTACGTATATTACCAAACAGTATTGctaattttttggtaa
aaaaaattaagggAGACTTACAAGAGATGAACAGCAATCGAAATCTTGGT
AAAGCATTCTTGATATTCTGGATGAAAGTGGACAATGGTATTTaatacaa
ataaaaacattttcaatacaCTTACTGAAATATTATAATTTGTTATTctt
aagcattattttttcaatatcttACTTCatggccgggtagctcagtcggt
agagcattcacTTTACAATCtcagggttgtgggttcgatccccggtcacc
gccaactcagcggatgagtagcttagattgggtaatctgatctaggcggt
aagttactgggagc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068695-exon-scaffold_487-1491911889:94309..94517 | TCONS_00068695-exon-scaffold_487-1491911889:94309..94517 | Clytia hemisphaerica | exon |
| TCONS_00068695-exon-scaffold_487-1510915933:94309..94517 | TCONS_00068695-exon-scaffold_487-1510915933:94309..94517 | Clytia hemisphaerica | exon |
| TCONS_00068695-exon-scaffold_487-1575043694:94309..94517 | TCONS_00068695-exon-scaffold_487-1575043694:94309..94517 | Clytia hemisphaerica | exon |
| TCONS_00068695-exon-scaffold_487-1491911889:97255..98372 | TCONS_00068695-exon-scaffold_487-1491911889:97255..98372 | Clytia hemisphaerica | exon |
| TCONS_00068695-exon-scaffold_487-1510915933:97255..98372 | TCONS_00068695-exon-scaffold_487-1510915933:97255..98372 | Clytia hemisphaerica | exon |
| TCONS_00068695-exon-scaffold_487-1575043694:97255..98372 | TCONS_00068695-exon-scaffold_487-1575043694:97255..98372 | Clytia hemisphaerica | exon |
| TCONS_00068695-exon-scaffold_487-1491911889:98783..99522 | TCONS_00068695-exon-scaffold_487-1491911889:98783..99522 | Clytia hemisphaerica | exon |
| TCONS_00068695-exon-scaffold_487-1510915933:98783..99522 | TCONS_00068695-exon-scaffold_487-1510915933:98783..99522 | Clytia hemisphaerica | exon |
| TCONS_00068695-exon-scaffold_487-1575043694:98783..99522 | TCONS_00068695-exon-scaffold_487-1575043694:98783..99522 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_487 | supercontig | scaffold_487:94309..99522 + |
Blast
The following BLAST results are available for this feature:
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