TCONS_00068679 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068679
Unique NameTCONS_00068679
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2672

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068679 ID=TCONS_00068679|Name=TCONS_00068679|organism=Clytia hemisphaerica|type=transcript|length=2672bp
caaattttgatgaagaaatcAATTTATCTGGCCCAGGTAAAAAGAagata
aattaaaaatatttaaagtaaaaactaaaataaattcAATATGCCACCAC
CATCAAAGCCAGGAGAACgccaaaaacttttcaaaaaccaaGACAAAGAC
ACTGAGTCTTTAAGACAAAGAAGAAATGAAGTATCAGTTGTACTGAGGAA
AGCAAAACGAGaagaagcacttcaaaaaagACGTCTTGTCCCCAATACAC
CAGAAGACgatgaaaaatataataaatttaTGGATGCATCACTACAGATG
ATTGTTGAGAATGCTGCACACGGTGACCCAGCAACAAGACTCAGTGCTGT
ACAAGCAGCAAGAAAATTGCTTTCAAAAGATAGACATCCTCCAATTGATG
AATTAATCAAgtCTGGCATTCTACCTATACTTGTGGAATGTTTACAGTTT
GATGACAATGCTTCTTTACAATTTGAAGCTGCCTGGGCCTTAACAAACAT
TGCTTCTGGATCATCTGCACAAACACAAGCTGTCGTACATGCCGGTGCTG
TCGCTCACTTCATGAGACTTTTAGAATCTAAACACCAAAATGTTTGTGAG
CAAGCTGTTTGGGCTCTTGGAAATATTATTGGTGATGGTCCTGTTTTAAG
AGACTTTGTAATTCGCCATGGTGTAGTTGCTCCTTTATTGACATTCATCG
ACCCAAATGTTCCATTAACTTTTCTTCGAAATGTAACATGGGTTATTGTC
AATTTATGCCGTAACAAAGAACCACCACCACCAATGGAAACCATTCAACA
ACTTTTACCAGCCCTTGGTGTTCTCATCCACCACAATGACCTTGATATTC
TTGTGGACAGTGTTTGGGCTTTGTCCTACCTTACTGATTGTGGTAACGAC
CATATTCAAGCTGTTCTCCAAGTTGGGGTTGTTCCAAAACTTGTGTCTTT
CTTAACGCACACTGAAATAAGACTACAGaCTGCTGCATTGAGAGCTGTGG
GCAACATTGTCACTGGCACAGATGAACAAACACAATCAGTATTGAATAAT
GGAGCTCTTGGACAGTTCCCTTCACTGCTTTCACATCAAAAAGAAAAGAT
CAGAAAGGAGGCAGTTTGGTTTCTGTCTAACATCACTGCTGGAACAGAAG
AACAGGTTCAGCAAGTTATCGATGCTGGCCTCATTCCTTTTGTCATCAAA
GCTCTTACAGAGGGagaatttcaaactcaaaaagaaGCTGCTTGGGCTAT
CAGCAATTTGACTGTCAGTGGTGTACCAGGACAGGTTGCATATGCAGTAC
AAGAGGGTTGCATTCCACCGTTCTGTAATTTACTCAGTGTACAAGACCCA
CAGATTATTCACATTGTCCTTGATGGTCTGACCAACATTATGAAGATGGC
TGGAGATGATGTTGAAAAGATTTGTATCATCATCGAAGAATGCGGAGGGC
TAGATCGTATTGAAGTCCttcaaaatcacgaaaatcctGATATTTATAAA
CTGGCGTACCAAATCATCGAGAAATACTTTTCAAATGATGTTGAAAATGA
AGACGAGACGGTGGTGCCCGAGCAAAACCCACAAGGACAGTACCAATTCA
ATGCCAAAGCAAGTGAGACGTCCAAATTCTCACTGTAAACATCCAATGAT
CACTTGCTGTGCGAGCGGCCATTTGCGGCGGAGCGAAAAACCCCTTGTGA
GAGATGTGTGCGTATGGTGACGAGATGAGCGTGCGCGTGCCCTCAAGAGA
GCGAGAGTGAGTGATGTCTGAAACCCTCCTTTCCCCCGATAAAAAATGAT
GACCCAAAGATTGAGCATCAATGCAAGAAAGACCACGCTGAATCAAAGAT
CccactctggtctgtaaaattgacgtcaattggTTCCAGTCTGGTGATTT
TGGTCCATGGTAAAAACTCGGAGACGATTCCTTCAAAAAGGAATATTACT
GACCAGATTTAGCAAACGATGGATGTGAttcaattttaaggttttgaagA
TTAGATGGAAGAGAATTCTGGTCTGGAAGTTGCATGACCAAGGAAAACAC
TACTAAACAAAATTGCTGGATCAGCATCtggattatttttctttaacccc
tatttctaaattttaaactttaaaaacaaaagatacttgattttgttttt
agactttATTGTTTTATCTGTAGCAAATTTATGTATCActaattttaaaa
tgtttttttttcgtagTAGATTTGTTTTAATCTTTTAGCATTTAACTTAA
AAACGAGACTAAAATATGTAAGGAACCCTCGAAACATTATTTATCCCCCG
TTGAAGATTAACTGAAAGTCAATATGTTTAACCGCTACAGTTTGTGGAGT
TTACTGATGACTTGAAGTTATTagtttttcaccttttttgtttttagaac
cCAAAATAGCCATcactttttaatgtttttatattatttaaaaactaaTC
ATACAAATTACGGATTTATTTTGCTGCTATGTATACTGTCGTTAAATAGT
GAGAAGTCCAATGTTCATTTTCTGAGTGTTTAGGTTATAGTATTTTTAAA
TGCCTGTGAAATGTTTGCTTGACGACTTCTCATTGTTTAATGTCAACTTT
TCACAAGATTATTTTAgaaattcatgtttttttttcaatggattttgatt
ttgtgtaaaaaatggaaaaata
Run BLAST on NCBI

transcript from alignment at scaffold_487:8519..20556+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068679 ID=TCONS_00068679|Name=TCONS_00068679|organism=Clytia hemisphaerica|type=transcript|length=12038bp|location=Sequence derived from alignment at scaffold_487:8519..20556+ (Clytia hemisphaerica)
caaattttgatgaagaaatcAATTTATCTGGTGAGACTTTTACTCGCATT TTCTCTGTTTCTTTTTCGTCGATTTTATACTTAAGTTATATGCCAAGAGA AGTAACTTGTTGATTTTTATTCTCTTTATTCCTTAATTTTTCATCCTCAA ATCTGCAAATTAAGTATATTCATAGTATAGTGTGAGAAATCCTAGCATGA ATTGGGTTACTTTTTCAGGCAATGATCTATACTTTAGGTAGCCAAAGtat tttgattgatttaaaTCAGCTGTATGGTTATAGGGCCAAGcccaattgat agtttggttcgtcagtcagggaaatccctcaattgcggtataaacgttac ttttacaattttcatataCAGCAATTGAAGTAtattcaagaaacagaatt caagattcaaggaaaaaacaggcaatttttgtacataattgatcatatct ttttaacgcacagacaaaatattttttccgtagatcagattcttttgata aagaaaagctttcttctcGTACGATTTTTTTATAGTGGATGTTTGTTTAT CTCtgtcgaccagcactatatgaacccgttataagcctttgtaggctaac TACAAACGAAaactactgcaattgcagtttactgcaattgagggatttcc ctgacttttcttgtcctccgaccgactctaaatttttgagaaaaagtgtt tcatttgagtcggaaaaatcaaaacaaatttaccTTCTTTTCACATGATA ACTACTATCTCTGCAGTTCTTTTTAAACTGACTGCTTTGATTCTTCTATA AACAACATCCAATTCGTGCACAGAAAATGTCCTGGTGTAGCAGAAACTCA CAGCTGTATTCCTTTAAGCACACGCCGCGAACGCCTTAATCTCCAACTAG AACCTATCTTGCGATCGTGTTGAGTGCCCTTGTCTTGTGGATCCGGGCTT TAGACTATTTCTTTACACTCGCGTTATGATTTCAGGATTGCACGATTGCt tgaggaatttcaaaaatagaggtttttggtgggaaaatgataaaaaggtt ccaattttagctaccgaccgaccgactgacccatttttcaaagcttttag gacacaaaccaaacaatcaattgggcctgaCCTAGGCTacaatcacaaat aacttgtgttggcgtcattttttaataaaaataatgaGTCGGTCAGTGAA AAAAACATCGGAAAAATGGAATTTCAAACTATGAATCAGGCAGAAATCAA ATCTattggaaattgaaaataaatggcCTGCTGTTATGTTTCTGTGTGTG TTTATGTAGACTGTCCCTGTCCCGTTGTAACGCGGTCCTTGGATTTCACC ATGTGGcccctcttttttttaaatgtggCTGTTTTTTCGACTACAAGGAG ATAATAACACATTCTCGTAAAGCTACAGGAAAGGTTGACCCCCTCCCCCA GCTCCCccctacgcagctctgctcgcagctctactctaccattttacaAT CTCTTATTTGCCGTACGAGTATTTTTTGGCAAGTTACTTGCCGACAGAAT CACGGGTAAGTAAAACAGCATGGTTCTGCATGGTTGGATGATAAAAAATC ATACTAGAtcataaatttttaaatatgacaGGAATTCAGATGTTTCTCAA ATTTAATAATGATATTATATTAAACATAATTATACATGACATCACTTTCA TGATTAGgagaatttgttttgatttaaatttgtattttaatgaccagcca ggtcattcaattgagggctatgcatgttggcctctactgatgcaagttat atacccgatctcacggtattgaTTAACAATCAAACTTTCAACCCTTCAGA GACTGAAATTGTGTGAGTATTTTGTTTCTTATGATTACTTTCAATAACTT CAAATAGTCAATTGATTACTTCGAGAAAGAATTGTTATAGAcatctttaa gaaaaaccaaaagcATTGATctaaaaccaaagcacaaaaagaagcaCCAG CCATAAGAATGGCTATTAGTAATCACCCTGCCATTTTGTGTGTGTGTGCC CTGGTTTTCCACAAGTAATTTGCGCATTTTGATTGGTCAGAGAAAAAAGT GGTTTTTGTGTGTGAATCATGCATCGGTTTCAGATTCTGATGCGCTGCTC TAGGAAGTATACCGTAGATTCGTCTAGATTGTGTATTCGTCTACACAACA CATGAAGCGCATGCACCTGTGCAAAATCTCTTGTACCACcatttaatttt acaactttcttACGCTGCGGGTCATGTGATCAAAATCATTCGCACACTTA AGaactggtttccccttccttattaCTTATCGTCAGCACATGTTCTAGGC GCCAAGATTGATcaaaggtattcaatatgatcgagAGTAATTGAAATATA ATCAAAATGatcaaacaaattaaaaatgggAGAAGAAAATACCATTATTT GGAGTTGAGTAAGTATTCAATCACTGATAAAATCAATAGCTCGTCACTGA CCACCTTCAATTATTATCGATTATTATTAATTACTTTGATCACAATTGGC CCATCTTGCGGATAAGCAAAACTCAAAATACAACTTTCCTGTGATCCTAG GTTGTAGATGTTTATCCATGgcagaaaattgacttttttttaatgttgaa atttcaaaaaagttttggaaatctccaagagaggttttgatgttaaaaaa taactaccgtgagatcgggtagcttgcatcagtggaggctaacatgcata gccctctaaTGAATGACttgactggtcattaaaatacaaagttaaatcaa aacaaaaatggtagagtagagctgcaagcggagctgcgtagttgtatttt aatgacccgacaggtcattcatttgagggctatgcatgtttgcctccact gatgcaagttacctgatctcacggtatgtgctatgtgagaaaacttttga caaaatagatcaccattcctcgactagttgcttaaagaacttgggtctgt aTTGAGTTTGCtcgtgttggaaatgttcatgacaTGCAAATAAGATGaag aaactgttggcaaaatataaataagaaaaaaaaagaatcaaaaaaactaa agttgggtttttgtcattttgtcttatttatagcgtgtacatgctgtttt taatgattatttgaaatttcgacattgaAAAAAGTCAGCTTCTTTGAAAT AactttcaaactaatttttcaaatttaatgtatgatagctgaAAATTCAa atagagcatcctctatatgattaaaaaagtgaacaaatatcttgacaaac ctgtatactttttttgggtGCACCTGGTATGTCCAAGTAGTTTGAGGACT ACAAACTAGGGGTTCCCTTGGGGAAAACTTGCTCTTTCTATGTTCTTCAT AGATAAGATAGTCAAGCCATCTAGCCCAGCCGTCTACTAAATTTTTTCTC TTGATTTTCTTTCAGGCCCAGGTAAAAAGAagataaattaaaaatattta aagtaaaaactaaaataaattcAATATGCCACCACCATCAAAGCCAGGAG AACgccaaaaacttttcaaaaaccaaGACAAAGACACTGAGGTAAGAGAT CTTTTATCAGTATTCGCTTTTAATCTAATTTGATGCTGTTTAGTATATTT TGGAGTATATaaatgataattttgatttCTTATGGTTTAACATTGAGTGG AAAGGAAGGAAGGAAAATGTTGCATGTTACTCTCGTTTAATCTGAACTTA TTTCCAAATGTCGCCATAATGACAAATTTATTCAATTATTACTGTACATA TGATTAGAGTGTAAGCAACAAACTCTGAGTGATGTACTTTTTATGATGGa agataacttttgaaatattgataCATGGCTCTGGTTCTTAACTAATCGAG CACTCTTATTATTGATTTACCATTCTTGTTTATGTTATTTCACCTAACTT ATTCTATCTTTACATCTGAAAATTCAAGGGATTGTTATAATAATAccttt ttattgtaaaattttagTCTTTAAGACAAAGAAGANACTTATTCTATCTT TACGTCTGAAAATTCAAGGGATTATTATAATAATAcctttttattgtaaa attttagTCTTTAAGACAAAGAAGAAATGAAGTATCAGTTGTACTGAGGA AAGCAAAACGAGaagaagcacttcaaaaaagACGTCTTGTCCCCAATACA CCAGAAGACgatgaaaaatataataaatttaTGGTAGGTGTCATATAAGA GAATGGTCAACTTGAATTTCAATCCTTTTTCCAGTAAAAGCAgagaaatt tattctttttaattgaaattgAACAAAAGCATCAAAGCAAATGTGTTAAC GGTGTTAATTTTGTTCTATTCTAAACATGGCTCATTGtacatcttttttt ctttttaccagGATGCATCACTACAGATGATTGTTGAGGTAAGCAGGCCT ACTTCAATAGTTACAAAATTTATGATACTGTATATAAAgataaattccaa aaaaaatggaTGAGGGGTGTTTTATTTCACAGTTTCATCAAAATCGTTTT CAAAAAAGTACTGTAATTCATATGATCctgatttgattttgtatccacCT TGTCCTAATGTACTTGTGTTTACTTATCTTTCAGAATGCTGCACACGGTG ACCCAGCAACAAGACTCAGTGCTGTACAAGCAGCAAGAAAATTGCTTTCA AAAGATAGACATCCTCCAATTGATGAATTAATCAAGTAAATAGTTCTTTG ATCAAGGGTTATAAATTGCTAGGTGCAGGCCTTTCCACAAATAAAATCGA ACGTGATCAATGAATTGAACTTGTAAATGATTTTTCACCAAATCGCTTGC GTCAATCAAATTTTGCGTGCAATTTCTAAAAAACGCTACccagaaatatt tttaccaatcATATAGATTATTCCTTTATCTATATCTATATCATAAAGTC TATCATTCTCATTTTCAATTGAGCTTATCAGCTGCGAGATCACCCTTAAA CAAAGATAACTTTATGATGGAAACCTAATCGACGTGAGCGACTTTTTGTC CACTATACGAGATTGGCAAGCGCTCTACTGAACGTGATAGTGATTGCTCG CGTCTTATTGAAATGACTGAGGTGTTTGTTAGTCTTATTTCTTGttaatg aaatttcaatgaaatatttgtaaatctttttatttcataCATTTTGCTCT AATTGCTTTTGCtgttatttcttttttaggtCTGGCATTCTACCTATACT TGTGGAATGTTTACAGTTTGATGACAAGTAAGTTTAAGCTCAAAATCTAC TTGCCTGAGCCTGTTCATATTAGTTTATATTaaactttcttttcatttaa atCTAATACATTACAAACAATATGTTATTAAGATATGGCCTTGGCCATTA TTAAAACAAATTTGTCTCCTATCCGAGTTTTGTCCTCCTTGTCACATATC ATACTGTTAGTGTCACAGCTCATGTGAACATTTCATCGATTGAAATTTGT CCTTTTCAGTGCTTCTTTACAATTTGAAGCTGCCTGGGCCTTAACAAACA TTGCTTCTGGATCATCTGCACAAACACAAGCTGTCGTACATGCCGGTGCT GTCGCTCACTTCATGAGACTTTTAGAATCTAAACACCAAAATGTTTGTGA GCAAGCTGTTTGGGCTCTTGGAAATATTATTGGTGATGGTCCTGTTTTAA GAGACTTTGTAATTCGCCATGGTGTAGTTGCTCCTTTATTGACATTCATC GACCCAAATGTTCCAGTATGTATTTCAATCcgtcattttctttttgctta aaTCCGTTTTATACCTCCTGCAGTTCATTGTGATATTCAGTGCAATGTTA ATAATAGCCATGAACTTTGTGTGAACCTNCATACATTTTGCTCTAATTGC TTTTGCtgttatttcttttttaggtCTGGCATTCTACCTATACTTGTGGA ATGTTTACAGTTTGATGACAAGTAAGTTTAAGCTCAAAATCTACTTGCCT GAGCCTGTTCAGATTAGTTTATATTAACNTTTAATTGAAATTGAACAAAA GCATCAAAGCAAATGTGTTAACGGTGTTAATTTTGTTCTATTCTAAACAT GGCTCATTGtacatctttttttctttttaccagGATGCATCACTACAGAT GATTGTTGAGGTAAGCAGGCCTACTTCAATAGTTACAAAATTTGTGATAC TGTATATAAAgataaattccaaaaaaaatggaTGANAAATTTCATATTTC AGTTAACTTTTCTTCGAAATGTAACATGGGTTATTGTCAATTTATGCCGT AACAAAGAACCACCACCACCAATGGAAACCATTCAACAACTTTTACCAGC CCTTGGTGTTCTCATCCACCACAATGACCTTGATGTAAGAAAGAATAATA GCTTTGGTTGAATTATTGCAATGTTTAAAACGGCACTTAAATTTGTAACA GCGATGTGATCGTTTTTAGATTTGAAATGGTGCAAATAACTGACATGATT CTCATAAAGATGCAAATAATTGCATTCGCACCCTAGTATAGTcataattg aaattttgattgaaatgttCGCATTTGCCTGGCCCCCCCAATATTttgta aagtatttttttttttactttgaaaaatcttatatataccgtttagaggg gtgaaataagggcaaaaagtcgaaaattttctttgtcgcCCAACCATCgt gggcgacatatttttttggcccccaCATGCGCACGCCGGGGACCATGATT TGTTGATGATTTCTGAAAACTTGTGGATGTGAGGAATCTTTCTTTGTGTT AGCTTATTATTTTCTAATGAATGACCCGTTTTAGATAATGTTAATTTCTA TTTGGTTTGTATTTCATTTTAGATTCTTGTGGACAGTGTTTGGGCTTTGT CCTACCTTACTGATTGTGGTAACGACCATATTCAAGCTGTTCTCCAAGTT GGGGTTGTTCCAAAACTTGTGTCTTTCTTAACGCACACTGAAATAAGACT ACAGGTAACAATTTTTTCTGATCaacaaggaaaaaatattttgagaagaG AGACAAGCCAAGTCACGAGTTGTGAAGCTAGATgttacaaaattaacaaa atccATCACGCAATATTTGAGAACTTgattttcgaaacattaaagTTTAA CTGTGTGTCCCTCACAAAGGCTTAGAAGTACATTAGCTTTAATTGAAGAA tagagttttgaaatttttttgtaaaattaaaacatgATATAGACTTTCAC ACTTATTAAGCCAGTGTAGTATGTTTTGATGTTTGAAGAAAAttgtttga tattttgatatttggctcTGCAGACGTAtcaacatttcaaattacataAA ATGATCCAGTATATATAAACAAACTTTCGGTAGCTTTGAGGAACTGCTTT ATAATATGATgacttaaaaaattgaatttatttttatttaattttaagaC TGCTGCATTGAGAGCTGTGGGCAACATTGTCACTGGCACAGATGAACAAA CACAATCAGTATTGAATAATGGAGCTCTTGGACAGTTCCCTTCACTGCTT TCACATCAAAAAGAAAAGATCAGAAAGGTTTgacttttcaatgattttta aaacaattcATATATTTATCTGAATACTAGTATCAACCTATATTTGCAAA GCTACCTAAAATGTACAATGTTCAATGCCAATGGCTAGAACGAATTGAAA ATTTCGCATATTTTAACTTTGTGTTATCCTTTTGTAGGAGGCAGTTTGGT TTCTGTCTAACATCACTGCTGGAACAGAAGAACAGGTTCAGCAAGTTATC GATGCTGGCCTCATTCCTTTTGTCATCAAAGCTCTTACAGAGGTAATTGG TTTCCCACTTTGTGATATTATTCTGTAAGAATCTAGAATTTTCCTGGTTT CCTTAAAATTTTAGTTTGGTCATCTGACTTATGGCATAGTGTTAGTTTTT CTATAGCAACTCATTCAGTTTGGTTATTTTCTTAGGGagaatttcaaact caaaaagaaGCTGCTTGGGCTATCAGCAATTTGACTGTCAGTGGTGTACC AGGACAGGTAATTATATCATTAATTTTTATTNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNTTGAGAAGAGAGACAAGCCAAGTCACGAGTTGTGAAG CTAGATgttacaaaattaacaaaatccATCACGCAATATTTGAGAACTTg attttcgaaacattaaagTTTAACTGTGTGTCCCTCACAAAGGCTTAGAA GTACATTAGCTTTAATTGAAGAAtagagttttgaaatttttttgtaaaat taaaacatgATATAGACTTTCACACTTATTAAGCCAGTGTAGTATGTTTT GATGTTTGAAGAAAAttgtttgatattttgatatttggctcTGCAGACGT AtcaacatttcaaattacataAAATGATCCAGTATATATAAACAAACTTT CGGTAGCTTTGAGGAACTGCTTTATAATATGATgacttaaaaaattgaat ttatttttatttaattttaagaCTGCTGCATTGAGAGCTGTGGGCAACAT TGTCACTGGCACAGATGAACAAACACAATCAGTATTGAATAATGGAGCTC TTGGACAGTTCCCTTCACTGCTTTCACATCAAAAAGAAAAGATCAGAAAG GTTTgacttttcaatgatttttaaaacaattcATATATTTATCTGAATAC TAGTATCAACCTATATTTGCAAAGCTACCTNGACAGTTCCCTTCACTGCT TTCACATCAAAAAGAAAAGATCAGAAAGGTTTGACTTTTCAATGATTTAT AAGACAATTCATATATTTATCTGAATACTAGTATCAACCTATATTTACAA AGCTACCAAAAATGTACAATGTTCAATGCCAATGGCTAGAACGAATTGAA AATTTCGCATATTTTAACTTTGTGTTATCCTTTTGTAGGAGGCAGTTTGG TTTCTGTCTAACATCACTGCTGGAACAGAAGAACAGGTTCAGCAAGTTAT CGATGCTGGCCTCATTCCTTTTGTCATCAAAGCTCTTACAGAGGTAATTG GTTTCCCACTTTGTGATATTATTCTGTAAGAATCTAGAATTTTCCTGGTT TCCTTAAAATTTTAGTTTGGTCATCTGACTTATGGCATAGTGTTAGTTTT TCTATAGCAACTCATTCAGTTTGGTTATTTTCTTAGGGagaatttcaaac tcaaaaagaaGCTGCTTGGGCTATCAGCAATTTGACTGTCAGTGGTGTAC CAGGACAGGTAATTATATCATTAATTTTTATTGGCAAACAAAAGCTTTGT TATAATCCCTATCCACTAAAAGAGATTACAATACTCAGGTCTAGCTATTA AGAAAAAGTTTTGCATGCCATACAACCATTAAGCTCAAATATATGGACTT ACCGGTTTATCTTGAAATAGGCGTGCTATTTTAGTTTGTACCTTAAatgt ggattaatttttgcaaatattgGCCATTTTAGCAATGGTAAAGATGAAAT CATGTGAAAATCGAATGTTAATCGATGAAAATGTATTTACCCCATTTTCA ACACTTATTTCCCTTCTTTGGAGAAATCTTAATTTTCtgaagatgtaaaa ataatagcaGATGGGTCACcaatatttccaattttgaactaAATTTAAAA TATCGAAAATACCCATGTAAGATTTTTAGAATATGTCAATAAGCAAAAAC AAGTCCaagcgaaaaattttattacTCAATTCGTAAAAAAAGTCTAcgtg aaaattaatccattTAAGGTAATAATTCCAGGCCCCTACAGCATCACTTC GTGAACAGTCAGGCTTGGCCCTGGCACTGAAATGATATAAGAGCTTACGA ATTGAATAAAATTAACTTagccattttacttttttgtcttCTAGGTTGCN AGAGTTTAcaaattgaataaaattaacttagccattttccttttttgtct TCTAGGTTGCATATGCAGTACAAGAGGGTTGCATTCCACCGTTCTGTAAT TTACTCAGTGTACAAGACCCACAGGTATGCATATTTCTTCAAGAAATATT TAGCAGGTCTTAATTGTTTTATCCATTAATCCAGTGATAGTTGAGATCTT CTTCTCGAAAAAAACACTAAATTTATGTTGAACTTGAAATTAACATAAAA TTTAGCTTAAAAGATCTAATTTACCAGATGGTGCTCATCAAACTTTAGCt gtaaaaggaaaattttcatcACATTTCTTATCTTATCTTTTTAGATTATT CACATTGTCCTTGATGGTCTGACCAACATTATGAAGGTAAGCATTCCACT GTATATCGCAATTGTTGCCTCACTTTTTACGTCAATAAAAGCAATGTTGC ATTCCATGGATTTCCTTTGCATTTGGACTACTAACCAATCCGTTCCAATC CAATCgagttttaagatttttcttgtgtttCTATTTTCAGATGGCTGGAG ATGATGTTGAAAAGATTTGTATCATCATCGAAGAATGCGGAGGGCTAGAT CGTATTGAAGTCCttcaaaatcacgaaaatcctGATATTTATAAACTGGC GTACCAAATCATCGAGAAATACTTTTCAAATGATGTAAGCATTCTTTTAT AAAAGTCACTCGACTCATTCAGCTGTTTCACGCGTAAACCTAGGCTGTTA ATAACCTAAGACAACATATAGGCCATATGAGATACTATGTAAACTTAATT TCGAGAAACTCAGATGAAGCATGGTCAATCATTAACTTTGTTGCCATTAT TGTAATTaagtttgattgatttttcaaaataagatgATTTGATATGTGTT ATATGGTGTTTGAGACAAGCAAATAGAACTATTGTATTTATTGTATTTAT CTTAGGTTGAAAATGAAGACGAGACGGTGGTGCCCGAGCAAAACCCACAA GGACAGTACCAATTCAATGCCAAAGCAAGTGAGACGTCCAAATTCTCACT GTAAACATCCAATGATCACTTGCTGTGCGAGCGGCCATTTGCGGCGGAGC GAAAAACCCCTTGTGAGAGATGTGTGCGTATGGTGACGAGATGAGCGTGC GCGTGCCCTCAAGAGAGCGAGAGTGAGTGATGTCTGAAACCCTCCTTTCC CCCGATAAAAAATGATGACCCAAAGATTGAGCATCAATGCAAGAAAGACC ACGCTGAATCAAAGATCccactctggtctgtaaaattgacgtcaattggT TCCAGTCTGGTGATTTTGGTCCATGGTAAAAACTCGGAGACGATTCCTTC AAAAAGGAATATTACTGACCAGATTTAGCAAACGATGGATGTGAttcaat tttaaggttttgaagATTAGATGGAAGAGAATTCTGGTCTGGAAGTTGCA TGACCAAGGAAAACACTACTAAACAAAATTGCTGGATCAGCATCtggatt atttttctttaacccctatttctaaattttaaactttaaaaacaaaagat acttgattttgtttttagactttATTGTTTTATCTGTAGCAAATTTATGT ATCActaattttaaaatgtttttttttcgtagTAGATTTGTTTTAATCTT TTAGCATTTAACTTAAAAACGAGACTAAAATATGTAAGGAACCCTCGAAA CATTATTTATCCCCCGTTGAAGATTAACTGAAAGTCAATATGTTTAACCG CTACAGTTTGTGGAGTTTACTGATGACTTGAAGTTATTagtttttcacct tttttgtttttagaaccCAAAATAGCCATcactttttaatgtttttatat tatttaaaaactaaTCATACAAATTACGGATTTATTTTGCTGCTATGTAT ACTGTCGTTAAATAGTGAGAAGTCCAATGTTCATTTTCTGAGTGTTTAGG TTATAGTATTTTTAAATGCCTGTGAAATGTTTGCTTGACGACTTCTCATT GTTTAATGTCAACTTTTCACAAGATTATTTTAgaaattcatgtttttttt tcaatggattttgattttgtgtaaaaaatggaaaaata
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042847XLOC_042847Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068679-exon-scaffold_487-1491911889:8519..8548TCONS_00068679-exon-scaffold_487-1491911889:8519..8548Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1510915933:8519..8548TCONS_00068679-exon-scaffold_487-1510915933:8519..8548Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1575043694:8519..8548TCONS_00068679-exon-scaffold_487-1575043694:8519..8548Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1491911889:11984..12109TCONS_00068679-exon-scaffold_487-1491911889:11984..12109Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1510915933:11984..12109TCONS_00068679-exon-scaffold_487-1510915933:11984..12109Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1575043694:11984..12109TCONS_00068679-exon-scaffold_487-1575043694:11984..12109Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1491911889:12626..12751TCONS_00068679-exon-scaffold_487-1491911889:12626..12751Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1510915933:12626..12751TCONS_00068679-exon-scaffold_487-1510915933:12626..12751Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1575043694:12626..12751TCONS_00068679-exon-scaffold_487-1575043694:12626..12751Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1491911889:12930..12956TCONS_00068679-exon-scaffold_487-1491911889:12930..12956Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1510915933:12930..12956TCONS_00068679-exon-scaffold_487-1510915933:12930..12956Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1575043694:12930..12956TCONS_00068679-exon-scaffold_487-1575043694:12930..12956Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1491911889:13153..13253TCONS_00068679-exon-scaffold_487-1491911889:13153..13253Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1510915933:13153..13253TCONS_00068679-exon-scaffold_487-1510915933:13153..13253Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1575043694:13153..13253TCONS_00068679-exon-scaffold_487-1575043694:13153..13253Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1491911889:13748..13795TCONS_00068679-exon-scaffold_487-1491911889:13748..13795Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1510915933:13748..13795TCONS_00068679-exon-scaffold_487-1510915933:13748..13795Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1575043694:13748..13795TCONS_00068679-exon-scaffold_487-1575043694:13748..13795Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1491911889:14028..14283TCONS_00068679-exon-scaffold_487-1491911889:14028..14283Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1510915933:14028..14283TCONS_00068679-exon-scaffold_487-1510915933:14028..14283Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1575043694:14028..14283TCONS_00068679-exon-scaffold_487-1575043694:14028..14283Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1491911889:14771..14902TCONS_00068679-exon-scaffold_487-1491911889:14771..14902Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1510915933:14771..14902TCONS_00068679-exon-scaffold_487-1510915933:14771..14902Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1575043694:14771..14902TCONS_00068679-exon-scaffold_487-1575043694:14771..14902Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1491911889:15391..15522TCONS_00068679-exon-scaffold_487-1491911889:15391..15522Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1510915933:15391..15522TCONS_00068679-exon-scaffold_487-1510915933:15391..15522Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1575043694:15391..15522TCONS_00068679-exon-scaffold_487-1575043694:15391..15522Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1491911889:15967..16095TCONS_00068679-exon-scaffold_487-1491911889:15967..16095Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1510915933:15967..16095TCONS_00068679-exon-scaffold_487-1510915933:15967..16095Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1575043694:15967..16095TCONS_00068679-exon-scaffold_487-1575043694:15967..16095Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1491911889:16256..16360TCONS_00068679-exon-scaffold_487-1491911889:16256..16360Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1510915933:16256..16360TCONS_00068679-exon-scaffold_487-1510915933:16256..16360Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1575043694:16256..16360TCONS_00068679-exon-scaffold_487-1575043694:16256..16360Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1491911889:16504..16575TCONS_00068679-exon-scaffold_487-1491911889:16504..16575Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1510915933:16504..16575TCONS_00068679-exon-scaffold_487-1510915933:16504..16575Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1575043694:16504..16575TCONS_00068679-exon-scaffold_487-1575043694:16504..16575Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1491911889:18524..18592TCONS_00068679-exon-scaffold_487-1491911889:18524..18592Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1510915933:18524..18592TCONS_00068679-exon-scaffold_487-1510915933:18524..18592Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1575043694:18524..18592TCONS_00068679-exon-scaffold_487-1575043694:18524..18592Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1491911889:18813..18854TCONS_00068679-exon-scaffold_487-1491911889:18813..18854Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1510915933:18813..18854TCONS_00068679-exon-scaffold_487-1510915933:18813..18854Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1575043694:18813..18854TCONS_00068679-exon-scaffold_487-1575043694:18813..18854Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1491911889:19009..19152TCONS_00068679-exon-scaffold_487-1491911889:19009..19152Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1510915933:19009..19152TCONS_00068679-exon-scaffold_487-1510915933:19009..19152Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1575043694:19009..19152TCONS_00068679-exon-scaffold_487-1575043694:19009..19152Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1491911889:19424..20556TCONS_00068679-exon-scaffold_487-1491911889:19424..20556Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1510915933:19424..20556TCONS_00068679-exon-scaffold_487-1510915933:19424..20556Clytia hemisphaericaexon
TCONS_00068679-exon-scaffold_487-1575043694:19424..20556TCONS_00068679-exon-scaffold_487-1575043694:19424..20556Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_487supercontigscaffold_487:8519..20556 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.493586 0.750041 0.238606 0.0763097 60.954 47.838 26.3144 28.4026 4.49964 7.63606 6.29627 7.74121 4.86619 7.36552 5.9965 5.77042 7.81503 5.67509 4.25472 3.57855 6.50105 5.57731 6.63006 7.29152 23.4168 26.8563 7.35184 7.4896 6.13659 6.51835
Blast
BLAST of TCONS_00068679 vs. Swiss-Prot (Human)
Match: IMA4 (Importin subunit alpha-4 OS=Homo sapiens GN=KPNA3 PE=1 SV=2)

HSP 1 Score: 661.759 bits (1706), Expect = 0.000e+0
Identity = 338/517 (65.38%), Postives = 409/517 (79.11%), Query Frame = 1
Query:  100 PSKPGERQKLFKNQDKDTESLRQRRNEVSVVLRKAKREEALQKRRLVPN--TPEDDEKYNKF--MDASLQMIVENAAHGDPATRLSAVQAARKLLSKDRHPPIDELIKSGILPILVECLQFDDNASLQFEAAWALTNIASGSSAQTQAVVHAGAVAHFMRLLESKHQNVCEQAVWALGNIIGDGPVLRDFVIRHGVVAPLLTFIDPNVPLTFLRNVTWVIVNLCRNKEPPPPMETIQQLLPALGVLIHHNDLDILVDSVWALSYLTDCGNDHIQAVLQVGVVPKLVSFLTHTEIRLQTAALRAVGNIVTGTDEQTQSVLNNGALGQFPSLLSHQKEKIRKEAVWFLSNITAGTEEQVQQVIDAGLIPFVIKALTEGEFQTQKEAAWAISNLTVSGVPGQVAYAVQEGCIPPFCNLLSVQDPQIIHIVLDGLTNIMKMAGDDVEKXXXXXXXXXXLDRIEVLQNHENPDIYKLAYQIIEKYFSNDVENEDETVVPEQNPQGQYQFNAKAS-ETSKFSL 1635
            PS    R K FKN+ +D E++R+ RNEV+V LRK KR+E L K+R VP   + ED +    F   + +L+ I++NA   +P  +LSAVQAARKLLS DR+PPID+LIKSGILPILV+CL+ DDN SLQFEAAWALTNIASG+SAQTQAVV + AV  F+RLL S HQNVCEQAVWALGNIIGDGP  RD+VI  GVV PLL+FI P++P+TFLRNVTWVIVNLCRNK+PPPPMET+Q++LPAL VLI+H D++ILVD+VWALSYLTD GN+ IQ V+  GVVP LV  L+H E+++QTAALRAVGNIVTGTDEQTQ VLN   L  FP+LLSH KEKI KEAVWFLSNITAG ++QVQ VIDAGLIP +I  L +G+F TQKEAAWAISNLT+SG   QV Y VQ+  IPPFCNLLSV+D Q++ +VLDGL NI+ MAGD+   I  IIEECGGL++IEVLQ HEN DIYKLA++II++YFS D  +ED  ++PE    G Y F+  A+ +T +F+ 
Sbjct:    5 PSLENHRIKSFKNKGRDVETMRRHRNEVTVELRKNKRDEHLLKKRNVPQEESLEDSDVDADFKAQNVTLEAILQNATSDNPVVQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERDDNPSLQFEAAWALTNIASGTSAQTQAVVQSNAVPLFLRLLRSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPLLSFISPSIPITFLRNVTWVIVNLCRNKDPPPPMETVQEILPALCVLIYHTDINILVDTVWALSYLTDGGNEQIQMVIDSGVVPFLVPLLSHQEVKVQTAALRAVGNIVTGTDEQTQVVLNCDVLSHFPNLLSHPKEKINKEAVWFLSNITAGNQQQVQAVIDAGLIPMIIHQLAKGDFGTQKEAAWAISNLTISGRKDQVEYLVQQNVIPPFCNLLSVKDSQVVQVVLDGLKNILIMAGDEASTIAEIIEECGGLEKIEVLQQHENEDIYKLAFEIIDQYFSGDDIDEDPCLIPEATQGGTYNFDPTANLQTKEFNF 521          
The following BLAST results are available for this feature:
BLAST of TCONS_00068679 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IMA40.000e+065.38Importin subunit alpha-4 OS=Homo sapiens GN=KPNA3 ... [more]
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