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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068664 ID=TCONS_00068664|Name=TCONS_00068664|organism=Clytia hemisphaerica|type=transcript|length=2396bp
tctgtttttgtttcatttttatctggtttggtagaggtcaagtaaaaaat
aagacatttcacggctagctacattccactgctcccaaaatctgaacaaa
ttttttacaaaatttctgaaatttcattaaaaaacttagctcagggtgaa
tcataagcataattcttaagcatataataagcataaactatgcctggatg
ctttgagaacttaagcatacacgagcctgaccaaggggcatacacttgct
tataaaaaaaaaacatgtatctcgaatacataaactcgctaacaTAGACA
AAGAAGCTAGATATCAGACAATGCGCAGTGTTAAAGGTTATTATTTTTAC
GAATCGAATCTTTCTATGATCCGATCTTATTATTAATCCCTTTCAAGGAG
AAAACAGTATAAAATAcgactttctataattcgaatctctctgtaattcg
aacaaattagacttTCGAATTATGTAGGGAGAGTCAATTATACgatgttt
ttttctcatttcttttttgtttacagCACTTCAACCAACTGGCACAAGAC
AACCTACTGTCAAACGAACTTAAAAATCAACCGGACAAATCAATGGGTGG
TGCTGAAACTCTGTCGTTTGATTGATGACAAACTAAATGGGAAAGTAATC
AAAACCGTTAAGGGTGTAGTACGGATGTTCTGTTTTACTTGggattattt
gaaaaattataccAAAGttcataataatttttttggagaaaacgattttt
tctatgttttttgtCACCTTTTTCGTCGTTTTTAAAGGCTGAATGAGCAT
GTAGACTTCATCAGTGTTTTTAAAGATTAGGAAACAAGGCTAAGTGTATC
ATTAGGAtgaaactacacgttttttttatataaggaacacgtttataagg
aactcgaggctgaaaatggttcaaaaaataaggaattgtcaaggaactgc
tcaggctgagaataagtggatttgaaaataatgtaccttattgggactaa
tttgaccaaattttgatctttcaaggggcaaaaagttcaaaatttcccat
gcagtaaggaactcgataaggaactttgagactgaaattcactgtaaaaa
taaggaactccaggctcagagcaaagttaaggttccttataaaaaaaaaa
aacgtgtattggatGCCGTCGAATTAATCtctcttttattaaaataccaa
aatcatTATTGGGACCCAAGGAGAGTAACGTGTCAATTGTCGTTCAAATG
GAAGCTGGTTGACTTCTTTAACTGAAAAAATGAACCGATCTGAAGTTTGC
CACTTTTGTATATCCAGTCCACCCGAATGCTCTGAATGTTCTGACCAGGC
GAAAGAAAAATGTAACATGTCTACCATTGTGCCAAAGTCTCTGAGAATTG
TTCCAGATGTAGCTTTTTTTCCTATTTCACGTTCCCCAATGACTGTTTTT
TAATCTGTTCCATTTTTCGCTCCGCCTGCACAAACCCCTTCTATTGTTTT
CTAAGCCATCTTAGTGCCATCTTAACTCAAAATATGGAGCAATTTCTTCG
CCTAAAACCATGATAGAAATATCCTTTggtattacacgctttttttatat
gaacaagTAAATTTTTTGCTGGCTGGGTTGTTAATATTTTCCATgcattt
caggcttaaatgtactttaaaactttaaaggTATAATGAAGTAACTTTTT
GACTTAAAAGGAGTTTAACTTCAatactttttgaaatcttgGACTGGAAT
TGTTCTTTGGTTTTACTCCTAATCGAGGcccgtgttcttataaaattgtc
ctAAAATTGTTACTGTGACCACCCACTCGAGAAAacctttttaactttat
ttttcatatttcgaggTTTCAGTGTCAGAGAGAGGTAGGAGTGTTGCGAA
ATTTAAGACACCAATAATCTTTATACTTTCCTATTTTCGTCTTTCGCCTT
CTTCTTCAATTATAAGATCTCTGGATTTCTTCTCAATGGTTTAAAAAGCT
ATTCCCCTAAGTTTCTGAGAACTTTGGTCTTCGAAACCAACcaatttttc
gactttttgacttttttgtgaGTCCATAAAACTAGTATAATCGAATCAAC
ACATCTATCAATCAACCGTAACACAAACACAAGGATTGATTTCGAATCAT
TCCAGAATTTTTTAGAATGTAAATATAATGAATTCAGATATCTAACCTCG
TTGCATTTAGCTTTCTATACATGCTCGATTGGTCTATTGGCGTTTTTTTG
CCTATCATTCTCTCCGACAGTTCTTTTTTTTCCATAGTTTCTTAATCTAA
ATGTTTTTTGATGCTTTGTATtatatttcatttcattgtaAATATATGAA
GAGGCCATTATAATgataatatataataatatgTACAAATGAAGCA Run BLAST on NCBI transcript from alignment at scaffold_486:190342..192737 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068664 ID=TCONS_00068664|Name=TCONS_00068664|organism=Clytia hemisphaerica|type=transcript|length=2396bp|location=Sequence derived from alignment at scaffold_486:190342..192737 (Clytia hemisphaerica)
TGCTTCATTTGTAcatattattatatattatcATTATAATGGCCTCTTCA
TATATTtacaatgaaatgaaatataATACAAAGCATCAAAAAACATTTAG
ATTAAGAAACTATGGAAAAAAAAGAACTGTCGGAGAGAATGATAGGCAAA
AAAACGCCAATAGACCAATCGAGCATGTATAGAAAGCTAAATGCAACGAG
GTTAGATATCTGAATTCATTATATTTACATTCTAAAAAATTCTGGAATGA
TTCGAAATCAATCCTTGTGTTTGTGTTACGGTTGATTGATAGATGTGTTG
ATTCGATTATACTAGTTTTATGGACtcacaaaaaagtcaaaaagtcgaaa
aattgGTTGGTTTCGAAGACCAAAGTTCTCAGAAACTTAGGGGAATAGCT
TTTTAAACCATTGAGAAGAAATCCAGAGATCTTATAATTGAAGAAGAAGG
CGAAAGACGAAAATAGGAAAGTATAAAGATTATTGGTGTCTTAAATTTCG
CAACACTCCTACCTCTCTCTGACACTGAAAcctcgaaatatgaaaaataa
agttaaaaaggtTTTCTCGAGTGGGTGGTCACAGTAACAATTTTaggaca
attttataagaacacgggCCTCGATTAGGAGTAAAACCAAAGAACAATTC
CAGTCcaagatttcaaaaagtatTGAAGTTAAACTCCTTTTAAGTCAAAA
AGTTACTTCATTATAcctttaaagttttaaagtacatttaagcctgaaat
gcATGGAAAATATTAACAACCCAGCCAGCAAAAAATTTActtgttcatat
aaaaaaagcgtgtaataccAAAGGATATTTCTATCATGGTTTTAGGCGAA
GAAATTGCTCCATATTTTGAGTTAAGATGGCACTAAGATGGCTTAGAAAA
CAATAGAAGGGGTTTGTGCAGGCGGAGCGAAAAATGGAACAGATTAAAAA
ACAGTCATTGGGGAACGTGAAATAGGAAAAAAAGCTACATCTGGAACAAT
TCTCAGAGACTTTGGCACAATGGTAGACATGTTACATTTTTCTTTCGCCT
GGTCAGAACATTCAGAGCATTCGGGTGGACTGGATATACAAAAGTGGCAA
ACTTCAGATCGGTTCATTTTTTCAGTTAAAGAAGTCAACCAGCTTCCATT
TGAACGACAATTGACACGTTACTCTCCTTGGGTCCCAATAatgattttgg
tattttaataaaagagaGATTAATTCGACGGCatccaatacacgtttttt
ttttttataaggaaccttaactttgctctgagcctggagttccttatttt
tacagtgaatttcagtctcaaagttccttatcgagttccttactgcatgg
gaaattttgaactttttgccccttgaaagatcaaaatttggtcaaattag
tcccaataaggtacattattttcaaatccacttattctcagcctgagcag
ttccttgacaattccttattttttgaaccattttcagcctcgagttcctt
ataaacgtgttccttatataaaaaaaacgtgtagtttcaTCCTAATGATA
CACTTAGCCTTGTTTCCTAATCTTTAAAAACACTGATGAAGTCTACATGC
TCATTCAGCCTTTAAAAACGACGAAAAAGGTGacaaaaaacatagaaaaa
atcgttttctccaaaaaaattattatgaaCTTTggtataatttttcaaat
aatccCAAGTAAAACAGAACATCCGTACTACACCCTTAACGGTTTTGATT
ACTTTCCCATTTAGTTTGTCATCAATCAAACGACAGAGTTTCAGCACCAC
CCATTGATTTGTCCGGTTGATTTTTAAGTTCGTTTGACAGTAGGTTGTCT
TGTGCCAGTTGGTTGAAGTGctgtaaacaaaaaagaaatgagaaaaaaac
atcGTATAATTGACTCTCCCTACATAATTCGAaagtctaatttgttcgaa
ttacagagagattcgaattatagaaagtcgTATTTTATACTGTTTTCTCC
TTGAAAGGGATTAATAATAAGATCGGATCATAGAAAGATTCGATTCGTAA
AAATAATAACCTTTAACACTGCGCATTGTCTGATATCTAGCTTCTTTGTC
TAtgttagcgagtttatgtattcgagatacatgttttttttttataagca
agtgtatgccccttggtcaggctcgtgtatgcttaagttctcaaagcatc
caggcatagtttatgcttattatatgcttaagaattatgcttatgattca
ccctgagctaagttttttaatgaaatttcagaaattttgtaaaaaatttg
ttcagattttgggagcagtggaatgtagctagccgtgaaatgtcttattt
tttacttgacctctaccaaaccagataaaaatgaaacaaaaacaga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068664-exon-scaffold_486-1491911889:190342..192737 | TCONS_00068664-exon-scaffold_486-1491911889:190342..192737 | Clytia hemisphaerica | exon |
| TCONS_00068664-exon-scaffold_486-1510915933:190342..192737 | TCONS_00068664-exon-scaffold_486-1510915933:190342..192737 | Clytia hemisphaerica | exon |
| TCONS_00068664-exon-scaffold_486-1575043694:190342..192737 | TCONS_00068664-exon-scaffold_486-1575043694:190342..192737 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_486 | supercontig | scaffold_486:190342..192737 . |
Blast
The following BLAST results are available for this feature:
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