TCONS_00068657 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068657
Unique NameTCONS_00068657
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length837

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068657 ID=TCONS_00068657|Name=TCONS_00068657|organism=Clytia hemisphaerica|type=transcript|length=837bp
NNTTACTTTGGAAATTATTGAGAGATTCTGCTAAAGGAGACTTGTTTACg
caagaaaacattttcaaaaaattcctcTGGAATTTTTTTCGAACACATGG
AACTTTGTTTACGAGAGAGATATTTGCAGAATGAATAACGAATCAATAGA
ATGACGTCAAAAGGGCGTATTTGTATTTAGACCTCACCTGCTTTATGAAC
GTTCTATGAACTAGGATTTTACTCGATTTATTAGAACATTTTGTTACACT
TTTTATAGGAACTTAGATTATTTTGGCAGGGTGAGTGTTGTGATTTATAT
TTTCGGGGGGAATGTCGTGGAATAGAATTTATGATTGACAGTTTGACCAC
GTGACCAGTAGGGTCACGTGGATATATAAATAGCGCGACATTTGTAATTT
ATGATTAGTACGAAACTAGACAGAGAAGAAGAAACATCTAATAGAAATAT
ACAGTCCTCCACTTATTTCGTTTCGGACATTTGGTCCAAACGAACCGGAT
ATGAATCTggtataaaagtttttttaaagaactgtTATTGAATTATCGTT
GTTGAACTTGACTGACTTGGAATGATTTGGAATTGAtttgaataaataat
tattGAACTTGTCGACTTGTGCTGCTGAACCTGAACTTATTGGACACTGA
TTTATGGATTTGATTGGAAATTTAATGAAACATTTATTNtgcgtgaatgc
gtgaatgggcattttcggttgcgtgaatgcgtgaaaattgggaaaaaaat
gcgtgaatgcgtgaattgaaaaaacttgcgtgaacgtgaaaattcaattt
ttgattgcgtgaatgcgtgaatctgggttattttgtg
Run BLAST on NCBI

transcript from alignment at scaffold_486:129917..130753

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068657 ID=TCONS_00068657|Name=TCONS_00068657|organism=Clytia hemisphaerica|type=transcript|length=837bp|location=Sequence derived from alignment at scaffold_486:129917..130753 (Clytia hemisphaerica)
cacaaaataacccagattcacgcattcacgcaatcaaaaattgaattttc
acgttcacgcaagttttttcaattcacgcattcacgcatttttttcccaa
ttttcacgcattcacgcaaccgaaaatgcccattcacgcattcacgcaNA
ATAAATGTTTCATTAAATTTCCAATCAAATCCATAAATCAGTGTCCAATA
AGTTCAGGTTCAGCAGCACAAGTCGACAAGTTCaataattatttattcaa
aTCAATTCCAAATCATTCCAAGTCAGTCAAGTTCAACAACGATAATTCAA
TAacagttctttaaaaaaacttttataccAGATTCATATCCGGTTCGTTT
GGACCAAATGTCCGAAACGAAATAAGTGGAGGACTGTATATTTCTATTAG
ATGTTTCTTCTTCTCTGTCTAGTTTCGTACTAATCATAAATTACAAATGT
CGCGCTATTTATATATCCACGTGACCCTACTGGTCACGTGGTCAAACTGT
CAATCATAAATTCTATTCCACGACATTCCCCCCGAAAATATAAATCACAA
CACTCACCCTGCCAAAATAATCTAAGTTCCTATAAAAAGTGTAACAAAAT
GTTCTAATAAATCGAGTAAAATCCTAGTTCATAGAACGTTCATAAAGCAG
GTGAGGTCTAAATACAAATACGCCCTTTTGACGTCATTCTATTGATTCGT
TATTCATTCTGCAAATATCTCTCTCGTAAACAAAGTTCCATGTGTTCGAA
AAAAATTCCAgaggaattttttgaaaatgttttcttgcGTAAACAAGTCT
CCTTTAGCAGAATCTCTCAATAATTTCCAAAGTAANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042829XLOC_042829Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068657-exon-scaffold_486-1491911889:129917..130753TCONS_00068657-exon-scaffold_486-1491911889:129917..130753Clytia hemisphaericaexon
TCONS_00068657-exon-scaffold_486-1510915933:129917..130753TCONS_00068657-exon-scaffold_486-1510915933:129917..130753Clytia hemisphaericaexon
TCONS_00068657-exon-scaffold_486-1575043694:129917..130753TCONS_00068657-exon-scaffold_486-1575043694:129917..130753Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_486supercontigscaffold_486:129917..130753 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.01399	1.35907	2.15957	1.92067	2.8263	0.760147	1.48516	2.13369	7.01197	8.89818	12.9949	4.00123	5.80418	4.13793	18.6831	18.6394	10.0803	11.1573	7.37537	6.44037	28.2404	25.6425	14.689	14.2494	0.818404	1.25587	38.3438	35.8322	26.2358	22.9725
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068657 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top