TCONS_00068653 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068653
Unique NameTCONS_00068653
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length403

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068653 ID=TCONS_00068653|Name=TCONS_00068653|organism=Clytia hemisphaerica|type=transcript|length=403bp
CTTTTGAGTAGGTCTATTGGCCAGTGTGATAGGTTACTAGGCATTCGTGA
CCTCAGGCTAGCATATGgaagtgttttgtttttataaagcaACAGTCTAG
GGCTATAAACAGTGTTGACAGGTCGACATAtcaatgattaaaaaaataaa
cataggTGTAAACGCATTATGAAATTTGAACTTTGAATCGTTTGTAATCA
ACGCTTTTAGACTAATTTCATCAAGACAAAATTTGCATTCGATCTTTGGG
ATACATGAGAGCCCGGTGGGGatcatttaaaaataaataggGGTCGGAAG
TTACTGCTGGTCAGGGTCACCTTTTTcactaagttttgaaaattgtatcc
AAAAGGAATATGACTTTAGTTCATTTTCACGACTTTTTAAGGTATGGATT
TTg
Run BLAST on NCBI

transcript from alignment at scaffold_486:71303..71705

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068653 ID=TCONS_00068653|Name=TCONS_00068653|organism=Clytia hemisphaerica|type=transcript|length=403bp|location=Sequence derived from alignment at scaffold_486:71303..71705 (Clytia hemisphaerica)
cAAAATCCATACCTTAAAAAGTCGTGAAAATGAACTAAAGTCATATTCCT
TTTggatacaattttcaaaacttagtgAAAAAGGTGACCCTGACCAGCAG
TAACTTCCGACCcctatttatttttaaatgatCCCCACCGGGCTCTCATG
TATCCCAAAGATCGAATGCAAATTTTGTCTTGATGAAATTAGTCTAAAAG
CGTTGATTACAAACGATTCAAAGTTCAAATTTCATAATGCGTTTACAcct
atgtttatttttttaatcattgaTATGTCGACCTGTCAACACTGTTTATA
GCCCTAGACTGTtgctttataaaaacaaaacacttcCATATGCTAGCCTG
AGGTCACGAATGCCTAGTAACCTATCACACTGGCCAATAGACCTACTCAA
AAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042825XLOC_042825Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068653-exon-scaffold_486-1491911889:71303..71705TCONS_00068653-exon-scaffold_486-1491911889:71303..71705Clytia hemisphaericaexon
TCONS_00068653-exon-scaffold_486-1510915933:71303..71705TCONS_00068653-exon-scaffold_486-1510915933:71303..71705Clytia hemisphaericaexon
TCONS_00068653-exon-scaffold_486-1575043694:71303..71705TCONS_00068653-exon-scaffold_486-1575043694:71303..71705Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_486supercontigscaffold_486:71303..71705 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.182875	0.356664	0	0.202576	0.739851	0	0.470229	0.660334	0	0.190884	0.185277	0.365381	0.121624	1.76831	0.103842	0.222878	0.686418	0.703556	1.7496	0.406851	1.94495	0.776193	0	0	0.785379	0.175233	0.501516	0.267616	0.202977	0.206801
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068653 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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