TCONS_00068647 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068647
Unique NameTCONS_00068647
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length348

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068647 ID=TCONS_00068647|Name=TCONS_00068647|organism=Clytia hemisphaerica|type=transcript|length=348bp
GAATAATATTAACAATGAACAACGTAAGAAAATCAATGTTTCTGCCACCA
GCAGCAGCTACagaatacaaaaataaagaattgagCATTTCCTTGGGTAA
TGCTTTTCAAGCTATCAATTCCTTTCAAAGGGTATTTGACCACACTGGCA
AACACTTTTACATTCTCGAAGATATGGATGGTGGAGATCGTCTTCGTGTA
TTTATGGTGTATTTCAATGAACAACAAAATGCTCTCGAGAAGAGAACTCT
AACCATTGATTTCCAAGATATGGATGGTTCGGAATCGGCCTGGCAGGAAC
TTGATGCGTATACTGGGAATGTTGTTGTCATTGTGAAGCATGATATAC
Run BLAST on NCBI

protein sequence of TCONS_00068647-protein

>TCONS_00068647-protein ID=TCONS_00068647-protein|Name=TCONS_00068647-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
IILTMNNVRKSMFLPPAAATEYKNKELSISLGNAFQAINSFQRVFDHTGK
HFYILEDMDGGDRLRVFMVYFNEQQNALEKRTLTIDFQDMDGSESAWQEL
DAYTGNVVVIVKHDI
Run BLAST on NCBI

transcript from alignment at scaffold_486:48039..48386

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068647 ID=TCONS_00068647|Name=TCONS_00068647|organism=Clytia hemisphaerica|type=transcript|length=348bp|location=Sequence derived from alignment at scaffold_486:48039..48386 (Clytia hemisphaerica)
GTATATCATGCTTCACAATGACAACAACATTCCCAGTATACGCATCAAGT
TCCTGCCAGGCCGATTCCGAACCATCCATATCTTGGAAATCAATGGTTAG
AGTTCTCTTCTCGAGAGCATTTTGTTGTTCATTGAAATACACCATAAATA
CACGAAGACGATCTCCACCATCCATATCTTCGAGAATGTAAAAGTGTTTG
CCAGTGTGGTCAAATACCCTTTGAAAGGAATTGATAGCTTGAAAAGCATT
ACCCAAGGAAATGctcaattctttatttttgtattctGTAGCTGCTGCTG
GTGGCAGAAACATTGATTTTCTTACGTTGTTCATTGTTAATATTATTC

Coding sequence (CDS) from alignment at scaffold_486:48039..48386

>TCONS_00068647 ID=TCONS_00068647|Name=TCONS_00068647|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at scaffold_486:48039..48386 (Clytia hemisphaerica)
TATATCATGCTTCACAATGACAACAACATTCCCAGTATACGCATCAAGTT
CCTGCCAGGCCGATTCCGAACCATCCATATCTTGGAAATCAATGGTTAGA
GTTCTCTTCTCGAGAGCATTTTGTTGTTCATTGAAATACACCATAAATAC
ACGAAGACGATCTCCACCATCCATATCTTCGAGAATGTAAAAGTGTTTGC
CAGTGTGGTCAAATACCCTTTGAAAGGAATTGATAGCTTGAAAAGCATTA
CCCAAGGAAATGctcaattctttatttttgtattctGTAGCTGCTGCTGG
TGGCAGAAACATTGATTTTCTTACGTTGTTCATTGTTAATATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042819XLOC_042819Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068647-proteinTCONS_00068647-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068647-exon-scaffold_486-1491911889:48039..48386TCONS_00068647-exon-scaffold_486-1491911889:48039..48386Clytia hemisphaericaexon
TCONS_00068647-exon-scaffold_486-1510915933:48039..48386TCONS_00068647-exon-scaffold_486-1510915933:48039..48386Clytia hemisphaericaexon
TCONS_00068647-exon-scaffold_486-1575043694:48039..48386TCONS_00068647-exon-scaffold_486-1575043694:48039..48386Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_486supercontigscaffold_486:48039..48386 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.05795	0.952839	3.83116	0	0	0.447294	0	0	0.274998	0	0.517175	0.366209	0.242168	1.01908	1.35206	0.824036	1.19815	2.19199	0.487055	0.439206	0.246776	1.24215	2.02069	2.05463	0	0.350873	0	0.460048	0.978121	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068647 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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