TCONS_00068641 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068641
Unique NameTCONS_00068641
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length394

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068641 ID=TCONS_00068641|Name=TCONS_00068641|organism=Clytia hemisphaerica|type=transcript|length=394bp
GCAGCAAACTGAAATCTGTCATTCAAAGAGAGTTGTCATCGATCTCAGTC
AATCTTCagtttttgacgattttttcttttttctcaatgcaacaaaagag
agaatctatttttatttcaaaagagAAGGTGTCTTAAGAATTGACGAATA
TGACTACACTGGCAATTTTCGTTATGTTTATTCGATTGCAATAGATGATG
GATACCATGATTATCATTTTGACGACCGTTATATTGTTTTATCACACAAA
GGAATTACTCACAAGGATAATGCTATACGAATTTGGGAATTGAATCAAGA
TAGGACATGTATTGTTCAAGAGTTTAATGATGAAATAATTGATTACGAAA
CATCAGATGCGAAGTcgtttttgtttcaatattcGATCAAAAGG
Run BLAST on NCBI

protein sequence of TCONS_00068641-protein

>TCONS_00068641-protein ID=TCONS_00068641-protein|Name=TCONS_00068641-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
QQTEICHSKRVVIDLSQSSVFDDFFFFLNATKERIYFYFKREGVLRIDEY
DYTGNFRYVYSIAIDDGYHDYHFDDRYIVLSHKGITHKDNAIRIWELNQD
RTCIVQEFNDEIIDYETSDAKSFLFQYSIKR
Run BLAST on NCBI

transcript from alignment at scaffold_486:4046..4439

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068641 ID=TCONS_00068641|Name=TCONS_00068641|organism=Clytia hemisphaerica|type=transcript|length=394bp|location=Sequence derived from alignment at scaffold_486:4046..4439 (Clytia hemisphaerica)
CCTTTTGATCgaatattgaaacaaaaacgACTTCGCATCTGATGTTTCGT
AATCAATTATTTCATCATTAAACTCTTGAACAATACATGTCCTATCTTGA
TTCAATTCCCAAATTCGTATAGCATTATCCTTGTGAGTAATTCCTTTGTG
TGATAAAACAATATAACGGTCGTCAAAATGATAATCATGGTATCCATCAT
CTATTGCAATCGAATAAACATAACGAAAATTGCCAGTGTAGTCATATTCG
TCAATTCTTAAGACACCTTctcttttgaaataaaaatagattctctcttt
tgttgcattgagaaaaaagaaaaaatcgtcaaaaactGAAGATTGACTGA
GATCGATGACAACTCTCTTTGAATGACAGATTTCAGTTTGCTGC

Coding sequence (CDS) from alignment at scaffold_486:4046..4439

>TCONS_00068641 ID=TCONS_00068641|Name=TCONS_00068641|organism=Clytia hemisphaerica|type=CDS|length=393bp|location=Sequence derived from alignment at scaffold_486:4046..4439 (Clytia hemisphaerica)
CCTTTTGATCgaatattgaaacaaaaacgACTTCGCATCTGATGTTTCGT
AATCAATTATTTCATCATTAAACTCTTGAACAATACATGTCCTATCTTGA
TTCAATTCCCAAATTCGTATAGCATTATCCTTGTGAGTAATTCCTTTGTG
TGATAAAACAATATAACGGTCGTCAAAATGATAATCATGGTATCCATCAT
CTATTGCAATCGAATAAACATAACGAAAATTGCCAGTGTAGTCATATTCG
TCAATTCTTAAGACACCTTctcttttgaaataaaaatagattctctcttt
tgttgcattgagaaaaaagaaaaaatcgtcaaaaactGAAGATTGACTGA
GATCGATGACAACTCTCTTTGAATGACAGATTTCAGTTTGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042813XLOC_042813Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068641-exon-scaffold_486-1491911889:4046..4439TCONS_00068641-exon-scaffold_486-1491911889:4046..4439Clytia hemisphaericaexon
TCONS_00068641-exon-scaffold_486-1510915933:4046..4439TCONS_00068641-exon-scaffold_486-1510915933:4046..4439Clytia hemisphaericaexon
TCONS_00068641-exon-scaffold_486-1575043694:4046..4439TCONS_00068641-exon-scaffold_486-1575043694:4046..4439Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068641-proteinTCONS_00068641-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_486supercontigscaffold_486:4046..4439 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.545982	3.76953	0.93706	0	0	0	0	0	0.368864	0	0	0.151513	0	0.268905	0.538734	0	0	0.813336	0	1.0365	0.685066	0	1.98215	0	0	1.52577	0.871762	1.34489	1.62404
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068641 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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