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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068639 ID=TCONS_00068639|Name=TCONS_00068639|organism=Clytia hemisphaerica|type=transcript|length=4249bpRun BLAST on NCBI protein sequence of TCONS_00068639-protein >TCONS_00068639-protein ID=TCONS_00068639-protein|Name=TCONS_00068639-protein|organism=Clytia hemisphaerica|type=polypeptide|length=531bp MTTERLSERIQEGSSNTTTVRQRSKKTTKNMVPKHHSDNNDSGAENGIMNRun BLAST on NCBI transcript from alignment at scaffold_486:349220..365324- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068639 ID=TCONS_00068639|Name=TCONS_00068639|organism=Clytia hemisphaerica|type=transcript|length=16105bp|location=Sequence derived from alignment at scaffold_486:349220..365324- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_486:349220..365324- >TCONS_00068639 ID=TCONS_00068639|Name=TCONS_00068639|organism=Clytia hemisphaerica|type=CDS|length=14364bp|location=Sequence derived from alignment at scaffold_486:349220..365324- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00068639 vs. Swiss-Prot (Human)
Match: S41A1 (Solute carrier family 41 member 1 OS=Homo sapiens GN=SLC41A1 PE=2 SV=2) HSP 1 Score: 378.637 bits (971), Expect = 1.396e-116 Identity = 245/424 (57.78%), Postives = 308/424 (72.64%), Query Frame = 2
Query: 1916 KESSFFIALQVFFPFFXXXXXXXXXXXXXDHVQHWKVYMEIPEVYILVPALLGLKGNLEMTLASRLSTAANIGHMDSPKEKRSIVIGNLILTXXXXXXXXXXXXXXXXIFRWVPSDQFNIHHAFLMCXXXXXXXXXXXXXXGGVMCTVIILSKKYGINPDNVATPIAASLGDLVTLALLSFFSDFLHRKIDDNVHLWIAPFICCLFTLMLPLWFYMAHHNKYTHTTLYNGWSPVIIAMCISSGGGLILSYFVQ--RFKGIAVFSPVINGVGGNLVAVQASRLSTSLHLKVPLGTLPDATNYGC---IRTFCTGGGHSRTSRVLLAMSIPGHIIFLAIISSLKAGHTSTTARFFCMYILAGFIQVAALLFICNWLVHILWKYRKDPDNYSIPYXXXXXXXXXXXXXXIDFYLLFLMGDRDDDLGE 3172
KE+SF I LQV FPF AG GTVAAG++LD VQHW+V+ ++ EV+ILVPALLGLKGNLEMTLASRLSTAANIGHMD+PKE ++ GN+ L Q QA VV LAS+AAV+F W+P F+I HAFL+CASS+ TA +ASL+LG +M VII S+K GINPDNVATPIAASLGDL+TLALLS S L+ ++ N +I P +C F +LP+W +A + T LY+GW PVIIAM ISS GGLIL V F G+AVF+PVINGVGGNLVAVQASR+ST LH+ G + C TF + +SR++RVL + +PGH++FL IS ++ GHT+ T F Y+ A +QV LL+I +W+VH +W DPDN+SIPYLTALGDLLGT LLA+ F++L+L+GDRD D+G+
Sbjct: 92 KETSFSIGLQVLFPFLLAGFGTVAAGMVLDIVQHWEVFQKVTEVFILVPALLGLKGNLEMTLASRLSTAANIGHMDTPKELWRMITGNMALIQVQATVVGFLASIAAVVFGWIPDGHFSIPHAFLLCASSVATAFIASLVLGMIMIGVIIGSRKIGINPDNVATPIAASLGDLITLALLSGISWGLYLEL--NHWRYIYPLVCAFFVALLPVWVVLARRSPATREVLYSGWEPVIIAMAISSVGGLILDKTVSDPNFAGMAVFTPVINGVGGNLVAVQASRISTFLHMNGMPGENSEQAPRRCPSPCTTFFSPDVNSRSARVLFLLVVPGHLVFLYTISCMQGGHTTLTLIFIIFYMTAALLQVLILLYIADWMVHWMWGRGLDPDNFSIPYLTALGDLLGTGLLALSFHVLWLIGDRDTDVGD 513 The following BLAST results are available for this feature:
BLAST of TCONS_00068639 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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