TCONS_00068637 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068637
Unique NameTCONS_00068637
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2825

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068637 ID=TCONS_00068637|Name=TCONS_00068637|organism=Clytia hemisphaerica|type=transcript|length=2825bp
CTAAGATTAACGTAAACAACCCAAGAGAACGAAGTCAAACACCCTTCTGT
CTTCTGCTTGCTTGGACAGCTACTGTACTTTTCTCTCTCTTTTATGATTA
GcatattaaaacatttttatttacgATAATTCTCAAACgatatgattatt
ttattgattttagcaattgaccaaaaaaaaagatatatgaGATTACATTT
TACGTTTGAAAGATGGGGAAGCTTGCATCAGATACTACTGTTGACCAAAA
ACCAAAGGAAAAACCAAAaacgaagaaagaaaaacacatGTATCCCAGAA
AGCTAGTCATTCGAAGACTTCCAACAAGTTTGAACGAGGAAACGTTGAAA
GAAGAGCTAGGAAACATTCCAGAATATGAATACTTCTATTTCACTACTGG
TGACACAAGCTTTGGTATGCAACCATATTCAAGAGCATACATTagcttca
aaaattatgacGATGTTTACGATTTTCGAAATAAGTTTGATGGACATCTT
TTCTATGACACAAGAGGTCGTGAATTTAGTGCGGTGGTTGAGTTTGCACC
GTGTCAACTTGTACCCAAAGAGAGACAAAAGAAAGACCACAAAACAGGAA
CACTGGAAAAGGATCCAGAATTCATTCAATTCTTGGAATCGTTGGACAAA
GAAGAAGAGAAGCTACCGAGTGCTGAGATCTACATCGAAGAAATTGAAGC
AGCCAAAGCTATCGATAAAAACAAGGTGAAGTTTACCACGCCATTGATCG
ATTATTTGAAAGAGAAGAGAGATGTTCGGTTAGCTGCCATTGCCCAGaaa
gagAAGGAACGAAAAGAAAGGGAACAAAAGAGAAGAGAACAACGTGACAA
GAAgcaaaacaaacacgaagaacAACGCAGCGAAAGAAAATCTACCGACA
GATCATCCAATCGTGATTCGAAGAAAAATGACGAACGAAAAGACAAATAC
AAGGACAAAGAGAAAGAGGAAAGCAACAGCAAGTCGGACAAACGAAAAGA
CAAGAAAGACAACAATACAAAACAACAAGACAGGTCGTCCTCAGCAAGCA
ACAACAGTAAAGATAAAGACGATCATCGcgagaaagagaagaaagaacGC
CTGGGCGAAGGCGGAGGCGGGGGCGGGGGCGGTAAACGTGGACCACGTGA
ACGAGCCAGCGACAGAAAAAAAGGTCGTAACAACAATGACAACCGACAAA
ATGAGCAACGCTCCTTATCATCAGCCAAAAACGAGAAATATCCGTCCTCG
TCAAAAGATCAAAGTAAAGACACGACAAAAGACAAaagttcttcttcttc
atcgtcGTCAAATAAAGATTCGTccaaagaatcttcgaaaaaagaaaaca
gacgCTTGACACCTCCCGAAAAAGGGTCCAGAGGAGAATCACCAGAGAAG
TCAGCAAAGAAAGACAAACGGAACAAGGAACGTGACACCAGCGACGATAC
ACCAACCTCGTCCTCCACAACCGCATCTCAGGCCGCATCTAAAGACAATA
CGCCAGAAGCTGTAAACTCCTCTGAGAAAGCAAGCCCGAATAAGAATAAT
CGAAAGCCACGACCTGAGATGAAAATCTACCGACCACCATCAGAACGGCC
CTCTTCTGGTTCTTCTAaaaatgtgacgtcatcttCAGAGAAAGATTTCG
ACGACCGTTCATCCAAGGATTCGTCATCCGACAGCAAACGAGGAAGTAGT
ACGTCTTCCAAATCAAATGACGGTGGAAGTAAAAACAACAAGCCACCGCG
ATACCGTGACGATCGCCGATCCAATCGTGATCGTGATCGTGATCGTGATC
GTGATAGGTATTACGATAGGCACGATCGATACAACGACAGTCACGAAAGT
CGACATTATTCCGATAACCGAAACAGCAAACGGGGTTCCGATTATAACGA
AAAATCGGGAAACCGGGATAAAGAGAAACGTGACGATTCTTCTTCAACAC
GACCtcaatcttccaaaaacaaaaataacgaATCTTCGAGTTCGACAAAA
AAATCTTCATCACAGAAAGATGTCTCGGTCACCGTGAAAAAAGACGTTGA
CAAAGAGCGCGAGAGAGAATTAGAACAAGAACGCTATCGAATGAATTGGC
TaggtaaagaataaaaagacatTGTATTTTATCAGAGGGGTACTAGGATT
GGcaaatgaggggtatgtgcggacgggacctccggaAACCGATGCTTAgt
gagactgatttttgctgaaaatacagactttttgaaaaaatctcttcgat
tttcggaaaatttcctacccttagatGTTAGAgagcttttttacgttttt
tttgtcTCGAAACcgaaaaaaatcctaaaaatcgtgaattagAGCAACTA
ATTAAACATTTTCTAATGTTTGCAACCCTAGGAGAGAcattgaaaggtga
aaaaccgacctttaccGTCTGCACATACGCAGCACCTATTTTTGTCTAAT
TACTCCCCCTCCCCCGTATTGTATAAAGTATTCTACCTTTAActtagttt
ttatttctgctCTGTATATTtactgaaattttgtttttgatctcTTTGTG
AATCATTGAATTATCTATcattgaattgaattttgtGTTGTGATTTGTAT
AAatattctttgttttcattGAACATTTTTATCGCAATTTCTTTGTGAAT
CCTGATTATTTTACTGGTTAAGTACACCAGGTTTTAAATCCAAAATCTTT
TGTCACATTTTTTTGTCTGTTAATTCATATGCTGAATAATAATAGAATTA
ATCAAATAATCATTACGCTAGTTGAAAACTTTGAACGCAAATAACGCCCT
CCAATTGTGTATAAATGAGTGCCGG
Run BLAST on NCBI

transcript from alignment at scaffold_486:296621..309567-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068637 ID=TCONS_00068637|Name=TCONS_00068637|organism=Clytia hemisphaerica|type=transcript|length=12947bp|location=Sequence derived from alignment at scaffold_486:296621..309567- (Clytia hemisphaerica)
CTAAGATTAACGTAAACAACCCAAGAGAACGAAGTCAAACACCCTTCTGT CTTCTGCTTGCTTGGACAGCTACTGTACTTTTCTCTCTCTTTTATGATTA GCATATTAAAACATTTTTATTTACGATAATTCTCAAACGATATGATTATT TTATTGATTTTAGCAATTGACCAAAAAAAAAGATATATGAGATTACATTT TACGTTTGAAAGATGGGGAAGCTTGCATCAGATACTACTGTTGACCAAAA ACCAAAGGAAAAACCAAAAACGAAGAAAGAAAAACACATGTATCCCAGAA AGGTAAATTTCGAAACACACGTTTGTATTATATAAAGAACATCAAAATTT TTTGAATCCTTTGAATGCTCTTAACTTTTTTGAGTTAAAAGCCTAAAAAT GTTCTTAACATTTTCATCACCATTTTCTGAGTATTTTTGTCGAAATTTGT CCATTTTCCTAAGAAATCGGGTGTATCGATTCCACAAATCCTTAGAATTC TTTGTGCGTTCTTAATTCCTTAATTTTTGACAATCGAAGCCATAATATGT TCTTTAGATGGTACATAGTTTGTTCTTATTAAAAAATGTGTGAAGAACAC TTTTTTGATTTGTTGTTGTTTAAAGTAATGTTTTTTTTGCGGAGAAACAC GGTTTTCTTGACTGGATTTTTGTCGTTATTTTGTTGAAATAATTTATATG ATTGGATAAGTTGTTTTTTTTCAAAATAATTTTAATTTTTGTATTTGTAG CTAGTCATTCGAAGACTTCCAACAAGTTTGAACGAGGAAACGTTGAAAGA AGAGCTAGGAAACATTCCAGAATATGAATACTTCTATTTCACTACTGGTG ACACAAGGTTTGATGGAAATTTCATTTATTATTGCCCGCCCTACATCCCG CCATTAAGTAATGGTGTCTTTTGGGTATTTCCCTCACTTTTTTTTCCCAT GAAAAAAAAAAAAAAAAATAAACCATGGAACTACGTACTTTTTTTCTTGT GTTGGTGGGATGGAGCATGTTGCATTGCACCAACGCGAAAAAAAGTTCTC GCGTCCCCAAGCCTTTAGATATACTGATATTTTAGAACTGTGACCCAACA CTTTTCATTTGGTTTTTAGCTTTGGTATGCAACCATATTCAAGAGCATAC ATTAGCTTCAAAAATTATGACGATGTTTACGATTTTCGAAATAAGTTTGA TGGACATCTTTTCTATGACACAAGAGGTATAAATTTAACTGTTATAAGAG TGTTATCCTATTAACGATACACCAAGACTTCTCTTTGTTTTGTGTCAAAG GTCAAAGGAGGTGTGTACTTTGGAAGGGCCAAAATTGACCAATATTTGGT TCCTCGTCCAAAAAGTAACGAATATTCATGATGAAATGGATGAAAACCCA TAATGCTATAAAAGAGAAAAGCGTACAGTGTACTTTGACCATATGACAGC TTCAGTAAAAATAAAATAAAACTTAATCCGAATATTATTGACAAACAACA AAATTTTCATTTTTTGAAAAACTTTTGTTGTTTGTGATCTGACTTCACAT TGATCCATGGCAAAATCAATTTTAGAATTAAGTTTTATCTTGTACAATGT ACTGATACTCCTGATTTTCCACAGGTCGTGAATTTAGTGCGGTGGTTGAG TTTGCACCGTGTCAACTTGTACCCAAAGAGAGACAAAAGAAAGACCACAA AACAGGAACACTGGAAAAGGGTGAAAATGCTTTCTTTACTTATTTACATC AAAAGAATCCTTCGTCATTTGTGTAGTGCTATTTACAGTACACATATTAC AGTACACTCGTCAAAAACCGGTAAAACCTACTCCTCATTGGAGAAATCGG CTTAAAACTGTCCAAGTGAGAAGAATATCCACATTCCCATTGGGTGGGAT TTGGCCCCTTTATTTTATCCTTGATAAAACGGGGTGTATTCTTTCTAACA AATATTTGTTGTTTATCTAATTCTATCATTTGTTCCACACTTTACTCCCA AATCAATCAACAAACAACCACGACAATTCATGATATGCACCANTCAAAAA TTATGACGATGTTTACGATTTTCGAAATAAGTTTGATGGACATCTTTTCT ATGACACAAGAGGTATAAATTTAACTGTTATAAGAGTGTTATCCTATTAA CGATACACCAAGACTTCTCTTTGTTTTGTGTCAAAGGTCAAAGGAGGTGT GTACTTTGGAAGGGCCAAAATTGACCAATATTTGGTTCCTCGTCCAAAAA GTAACGAATATTCATGATGAAATGGATGAAAACCCATAATGCTATAAAAG AGAAAAGCGTACAGTGTACTTTGACCATATGACAGCTTCAGTAAAAATAA AATAAAACTTAATCCGAATATTATTGACAAACAACAAAATTTTCATTTTT TGAAAAACTTTTGTTGTTTGTGATCTGACTTCACATTGATCCATGGCAAA ATCAATTTTAGAATTAAGTTTTATCTTGTACAATGTACTGATACTCCTGA TTTTCCACAGGTCGTGAATTTAGTGCGGTGGTTGAGTTTGCACCGTGTCA ACTTGTACCCAAAGAGAGACAAAAGAAAGACCACAAAACAGGAACACTGG AAAAGGGTGAAAATGCTTTCTTTACTTATTTACATCAAAAGAATTCTTCG TCATTTGTGTAGTGCTATTTACAGTACACATATTACAGTACACTCGTCAA AAACCGGTAAAACCTACTCCTCATTGGAGAAATCGGCTTAAAACTGTCCA AGTGAGAAGAATATCCACATTCCCATTGGGATTTGGCCCCTTTATTTTAT CCTTGATAAAACGGGGTGTATTCTTTCTAACAAATATTTGTTGTTTATCT AATTCTATCATTTTTTCCACACTTTACTCCCAAATCAATCAACAAACAAC CACGACAATTCATGATATGCACCACTGCAATATGACTTCAGGAAATTATG CTACTTTTCTGTTTTTGTTCCACCCAATACGTCACTTTTTCTTTTGTTTA AGTGACGTATTGGGTGCAAAATTTTCAAAGTTCTCAGAAGACTCTCCAGT GGTGTATTCTCAACTTCAGTTGAGTTAGAATCTGAGAATGTCTGTGTGTG TGTCTGTGTGTGTGTGTGTGTCTGTGTGTCTGTCACCAAAACTTTGGGGC AGCCTGGAGACTTCAAAAATGGTCCGATTTGGCTGAAATTTTGCACACTT CATCCTTGGGCCAATCCCTGGGGGTGTTTTTTTCATTTATTCAAAATTTC AATTTTTGGGGCCTGGGGACGAGTTTTTCGCCAAAACGAGGCTAACACTT TGGGGCAGGCTGGAGACTTTAAAAATGGCCCGATTGGGCTGAAATTTTGC ACACTTGATCCTTACGCAAATCCCTGGGGGGGTTTTTTTCATTTTTTCAA AATTTTAATTTTTGGGGCCTGGGACGAGTTTTTCGCCAAAACGAGGCTAA AACTTTGGGGCAGGCTGGAGGCTTTAAAAATGGTCCGATTGGGCTGAAAT TTTACACACTTGTTCCTTGGGCAAATCCCTGGGGGCGTTTTTTTCATTGT TTCAAAATTTTAATTTTTGGGGCCTGGGGACGAGTTTTTCGCCAAAACGA GGCTAACACTTTGGGGCAGGCTGGAGACTTTAAAAATGGCCCGATTGGGC TGAAATTTTGCACACTTGATCCTTACGCAAATCCCTGGGGGGGTTTTTTT CATTTTTTCAAAATTTTAATTTTTGGGGCCTGGGACGAGTTTTTCGCCAA AACGAGGCTAAAACTTTGGGGCAGGCTGGAGGCTTTAAAAATGGTCCGAT TGGGCTGAAATTTTACACACTTGTTCCTTGGGCAAATCCCTGGGGGCGTT TTTTTCATTGTTTCAAAATTTTAATTTTTGGGGCCTGGGGACGAGTTTTT CGCCAAAACGAGGCTAACACTTTGGGGCAGGCTGGAGACTTTAAAAATGG CCCGATTGGGCTGAAATTTTGCACACTTGATCCTTACGCAAATCCCTGGG GGGGTTTTTTTCATTTTTTCAAAATTTTAATTTTTGGGGCCTGGGACGAG TTTTTCGCCAAAACGAGGCTAAAACTTTGGGGCAGGCTGGAGGCTTTAAA AATGGTCCGATTGGGCTGAAATTTTACACACTTGTTCCTTGGGCAAATCC CTGGGGGCGTTTTTTTCATTGTTTCAAAATTTTAATTTTTGGGGCCTGGG GACGAGTTTTTCGCCAAAACGAGGCTAAAACTTTGGGGCAGGCTGGAGAC TTTAAAAATGGTCCGATTGGGCTGAAATTTTGCACACTTGATCCTTGGGC AAATCCCTGGGGGCGTTTTTTTTTATTTTTTCAAAATTTTAATTTTTGGG GCCTGGGGACGAGTTTTTCGCCAAAACGAGGCTAAAACTTTGGGGCAGGT TGGAGACTTCAAAATTGGTCCGATTGGGTTGAAATTTTGCACACTTGACC CTTGGGCAAATCCCCGGGGGCATTTTTTTCATTTTTTCAAGATTTTGATT TTTGGAGCCTGGGGACGAGTTTTTAGCCTAAACGAGGCTAAAACCCAAAC TGCTATAATTTTTCTTAAGCCATTAAGTTTACATTTGGGCCTACGAATGA TTTCAAAGATACTGAAGTTGAGCCAGTGCGGTTAGCACGTTCGACAGTAT CATGAATTCCTTTTATATTACTCAGATCCAGAATTCATTCAATTCTTGGA ATCGTTGGACAAAGAAGAAGAGAAGCTACCGAGTGCTGAGATCTACATCG AAGAAATTGAAGCAGCCAAAGCTATCGATAAAAACAGTAAGCTTTTTTTG CTTCAAACAGGATGTTTAGAATGATATCCTCCTATTGGAATTTTATTTCT CTCTCACATCATCGATCAATGTTTGAAAGCCCAATAAGATGCTTACCTAC GTGGAAACTAAATTACCACTGGAATACAGATTGTGCCCCCTTTCCTTTTG TTCTCTCCTTAAATTTAATATAAGTAAGTATATTCATCTGGTTGCTGTTG GTGGAGCCGGGAGTGGGGGAGTTAATCACCTTTTCTAATTGCGCTGACCT GGGAGATTGCTAGGAGTGCTAGGGGGAGAACTACATCTACTCTCGGCATC TATTTTAACTAACCAACCTATGTCAGATTACCCAATCTAAGCTACTCGCA CACCGAGTTGGCGACCCTGTCATTCATCAGCAGCCTTAGTAATATCTGGG ATACATGGATATTTTGTGTATTTTCTTTAAAGTATTGTTTTGCTTTTCGT AGAGGTGAAGTTTACCACGCCATTGATCGATTATTTGAAAGAGAAGAGAG ATGTTCGGTTAGCTGCCATTGCCCAGGTAACGTCCAGTATAATGATATGT TTTGAAAAAACCTTGCAGAACCTTGCTATATTATCAAGAAAAGCGAGAAG TACAATCATTAGGAATAATTAAAATCCATAATTCGAACACACATGGGGAA CACAAATTTGTTCGAGTTAAGGAAATTTACAGGGGAGCTATAATGGGTGT AGTAAATAGCGATATTCCAATCAACTTGAAAAAGTTTTTTTTTTTTTATG TTTTCATTTGTTGTTTTTTTTTCAGAAAGAGAAGGAACGAAAAGAAAGGG AACAAAAGGTATATTTTCCTATGAGGACTTTAAGGTTACAATAAATAATA AACAGTAGACAAAAAGAACGACAAAATTCGACGTCCGCAGCCCCTACCCG GATAGTTTGTCCACCCGTACGATTTGATTCCTCTTTGTTTATGAACGACT TATGGCTTTAAAGAACGATAAATTTATGCCTGTGTGTTATTAAATGCAGG AATTGTCAGTCAAACTCACTGTATTCGCTTATTGTAGAGAACTTAAGCCA TCTTAGGTGTCGTCTTCCTAGGGTCAGGGGGATATAGGTTTTGAGACCAA AGGGAGGTATAAGGGGAGGAAAAATATCTGAAACCAGGGTTGGGAGCAAC TGAGGAGGAGCAATAGGAAATATACCGGGTGTGCCACAAATAAGTTACCC TCTTTGAATTTATATTGCAGGCAGTAGCAGAAAGATTTTTCAAAGATTGT TTCGGAATCATTCAGAGGAAAGCCTAACTTAAAATTTGGTGTATTACTTT TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTGTGCCACA AATAAGTTACCCTCTTTGAATTTATATTGCAGGCAGTAGCAGAAAGATTT TTCAAAGATTGTTTCGGAATCATTCAGAGGAAAGCCTGACTTAAAATTTG GTTTATTACTTTTTAATTTTAATCCATTGGTTCAAGAGTTATGTTCAAAA ACCTAAAATGTCAATTTTTAAACATGTCAAAAAAGGCTAAAAACAAGGGT ATCGTTTTATGAGAGAAACGACTTCTTTTACCAAGTCTTGCTCCTTGTAA CACTCTTTATCTATTCTTTATCTCAATTTTTTTGTTTTTGTTTTTTTACT TCTGTTTTCCCTTGGGCATAGACATAATGCAAAATGCCTCAACCCTCACA AAATTTTCAACATCTTTCCAAGAGTTTCCGAGAGTTTTTCTGTATGTGCA TCATCGTCGAGAAAGGTAGATAAGGTGAAAGCTTTGAGCAAAAATGCCTT GTTTGAGCTGCTACAGCTCATATCGATTCACAGATGATGGAATGTTTTTA AATGGATGCCTAACCTTGTAAATAAATGCTTTTTACATAATGGAAATACA TTTCCTGATGCATAAAATGGGTTCGTGTCTCTATTCATTACAGCCAATTT TAATACTCTCGTTTTTGCCTTTTTTGACATTTTTAAAGATTGATATTATT TATTTTTGAACATAACTTTTGAACCAATGAAGTAAAATTAAAAAGTAATA CACCAAATTTTAAGTCAGGCTTTCTTCTGAATTATTCCGAAACACTCTTT GAAAAATCTCTTTTCTACTGCCTAAAATATCAGATCGAAAAAGGTAACTT ATTTGTGGCACACCCGGTAGGAGACCACTTTTAAATTGTTAATTCAAAAG TTGAAAAAAGCGGATTTGCTGAAATACAACTAGACATATTTTTTTTAATT ATTTTAACCAGCAATATCAAAGAGTCTTACTTGAATACAAATCCTTTCAA TTAATCCGCTTCAGCACACCTTTTAGACCGTAGTCACCAATTGCCGCGCG GGCATTTTTTTTGTTCCAGTTCTTTTTTCGCCCCTATAGACAACAATAGA AAAAGGTGTAAAAAAAGGTTTGGATCGAGTTTAGAGGGATGATTAAATAA TAAAGTGGCACGCGCCTGCCCGCGTGACTATGGTCGAAAAGGTGTATTCA TTTCAGTTGTTTGTTTCATACAAAGTTGTCTCCCTTCATTCTTCTAGAGA AGAGAACAACGTGACAAGAAGCAAAACAAACACGAAGAACAACGCAGCGA AAGGTATGTTGTTGTATTTTATTTTAACAAAGTTGTGAATACGTGAATAC GTTAACAACAACAATTTTACAGTTGACTCTCGCTAATGCGAACTCGAACG GCGAATCTTGTTCATTCGAATTACAGAGAGATGTATTTTAAGAGGACTTC TCCTTGGCGGGGTCTGGAAACAAGTTTGAATTATAGAAATATTTGAATAT TTAGAAGTTAGATGATACAATAATGACCGGTTAGTGAGGGCTGTACTGAG GACCGAGCTTGCGAGGTTGTTACGTCGACCGAAAAAAATATTCTCCATAG TTAAAAAAATTTGAATTTGTTTTTCGAGAATTACTTCAGGCGTACAAACT TTCTTAACTATGGAGAACATCTTTTAGAAAATCTACCGACAGATCATCCA ATCGTGATTCGAAGAAAAATGACGAACGAAAAGACAAATACAAGGTATGA TTATATTAACAATATTAAAACAGTTTTCTCACGTTTCACTCAAAATATCA AAAGAGGACACTACACCGAATCTCAAAGTTATTTTTGACAAACCATAACA TCAGAGGCTCTTATTCGGATTTATTTTATTAAATCTTTGTGAACTGGTTG GATAAAAATATTTTTTCAAGTACCAAGTTACCATTCTCTCTCTCTTTCAA TCCTAATTTAATTTTTCCAATTGTTCGCTAAAATTATGTTCCGATGAAGA ACCGATGGTTTAACTTCCCCATCGTATAAGACTCTGGATTGGAGGTAAAA CGAGATCTCGTTTGGTAAAATGTGCGCGTGATCTACTAAATTGGTCCCTA TATGGCTAGAAACATTTTTGAAAATTCAGTGTTTTTTAGAGGTTCGTGCA TGACACTAAATTCTCCAGTTTCCTCAGATCGCTCCGTTTTCGTACTAAAT CCTTATGTTGCAGCAAGAGAACTCCTATGATTGGTTTGTTTTTCCCGTTT TCCCGCGTGTTTATTTATTTGAACCGGTTGCTATTACCTACCTACAAAAA GCTTTCTGACCTTTCTCTGCTTGCCAGCTTGCTGTGGATTGGAATGATAT TGATTTGGATCATCCTGGCAAGAATATTGTTGTTATTTATTTTATCTAAT TAACAAGATTCTTTCTCGCGTCGCTAGTTGCCTTAGGTGACGGTCTGGGT TATATAATATCAAATTCAATCTTTGAAAATGAAATCGGATCCTAGAATGA CTGAGAGTGAGAAAATTACCCATCATGTAGACGATGCTATCGTCCGTGTA ATATGTTATGATGATATTATGATATAACATAGTTGTATATTATAAAACGT AATATGTTGCGTGGCGGAAAAATAGAGTCTGTGTTTATATTGAGCCCCTC CGACTATTCTTGTGCGTGCGGACAAAATTTCCGCCCGGAAATTCTTTATT ATTTGAATTTGTCTTAGACTATAGCAAAGTCTACCCATCATGTGTCTATT TTCAGGACAAAGAGAAAGAGGAAAGCAACAGCAAGTCGGACAAACGAAAA GACAAGAAAGACAACAATACAAAACAACAAGACAGGTCGTCCTCAGCAAG CAACAACAGTAAAGATAAAGACGATCATCGCGAGAAAGAGAAGAAAGAAC GCCTGGGCGAAGGCGGCGGCGGTGGTGGTGGCGGGGGCGGTAAACGTGGA CCACGNAAAGAAAGAACGGCTGAGCGAAGGCGGAGGCGGGGGCGGGGGCG GTAAACGTGGACCACGTGAACGAGCCAGCGACAGAAAAAAAGGTGCGTAC AACAGTCTCCATAGCTCGAACACACACGGGGAACACAGATTGGTTCGATT TATAGAGTAAGGTTTATAAGGCATTATTAACTGAAAAGACCATAAGATTT GTCCGAGTTAAGAGATATTCGAATTATAGGGGTTCGAGTTGAGTAGACTC AACTGTAGTTGATGATGTTTTTGTAACAAAGAAGTTGTCGTTTTCATTCT TATGCAGGGGACACGGTGTATAACGATTCTGTCCAGGACTATATTTAGCT GCTTGGTGGGAGGAAAGGCCGGGGGCCTGGGTCGAGTGATGCTTTTTGTC CTGGGTAAAAACAACTCAATTTGGCTAGTGAGGTTTATTCTTAGTGACAT GATTTTATGATATACGAGTGAGCTTTTTCTCATTTATATATATGACATAT CTCTTGCCACCGAACGAGTATTATGGCTTTTTTCATCCTCGTATTCATCC TCATACTAGGTCGTAACAACAATGACAACCGACAAAATGAGCAACGCTCC TTATCATCAGCCAAAAACGAGAAATATCCGTCCTCGTCAAAAGATCAAAG TAAAGACACGACAAAAGACAAAAGTTCTTCTTCTTCATCGTCGTCAAATA AAGATTCGTCCAAAGAATCTTCGAAAAAAGAAAACAGACGCTTGACACCT CCCGAAAAAGGGTCCAGAGGAGGTAAAAATGATTCCCTTGCAACTACCTT ATCGGCCAAAACTTAGTCGGCCCTAAGTGACTAAATTTTGGCTTGGTGAC TAAAATTAGGGCCGAAGGCCGACTAAGTTTTGGCCGATAAGATATACAGT ATTTGTACGATTAATCAAAAATTTACCACCTTAGAATTTCGCAAAATTCA GCAAAATATTAAAAATCTGGGATAATCACGCCACATAAAAACGTCTCTGT TTCGTCATTAAGACGTCGTCCTGTTTACTTGGATAGCATAAAAGAATTCG CAAAGCATTGTTATTCATTGGTGAGAAGTACTAGTATCTATATCCATTAG GGAATCGAATTTACGATAATTCCAATTTTATCCATATAATCCTTCAGAAA GAAACCTATGAAATGTATTTTTTAAATACTATAATGCAACTATTATCATC TCTCTTTACAGAATCACCAGAGAAGTCAGCAAAGAAAGACAAACGGAACA AGGAACGTGACACCAGCGACGATACACCAACCTCGTCCTCCACAACCGCA TCTCAGGCCGCATCTAAAGACAATACGCCAGAAGCTGTAAACTCCTCTGA GAAAGCAAGCCCGAATAAGAATAATCGAAAGGTAACCAAAAAATTCTTGA AAATGTTAGTATAACCCCTGGAAAATTGCTAAATGTGCAAAAAAATTCTT CTTGATACCTTGATGGTGGACGAACTATAACCTTTTAGGTTATAAAAATA GTCTTTTACCCCCTGGAAGTTTAAAATAATTTTGCCACTTGGAAAAATAA AAAACAACTTCCATTGAAAATTCTTCTTCGGATTACCTCTTTGAAAAGTT CGTCCACCCCCCCCCTGTATGGATATAAAATAAAATGAATGTAAATTAGC CTGCAAACTGCAAAGTGAATGCTACTGTGCTACTACTGTACCTACTACTC TTCTATACTTGAAAAATATGAAGATAACAAGTAGAATTAACTTTTTTATT ACAGCCACGACCTGAGATGAAAATCTACCGACCACCATCAGAACGGCCCT CTTCTGGTTCTTCTAAAAATGTGACGTCATCTTCAGAGAAAGATTTCGGT AAGCCTCATTCTTCATGTCCATCATGAATAAACACAACAGTTTGTTTTGT TTTGGTTGAAAGCAACAATCGTCAATCTGTTTGGAATCTGATACCTTGGC GGAAACTAATTTTGACGAGCGGCAAAATTCCTGAAAATTTTTAATTTTGG CGAGAACTTATTTTGGCGAGTGGACAAAATATTTAATTTTGGTGGGTCTT AATTTTGGCGAATTTTGTCTAAATGCGCCAAATTCGCCAAAATTAGTTCC CGCCAAAATAAGTTCCCTTAAGGTAGTTTCCATTTCTATTCAACCCATAA CTGGAAATGGAATTTAAATCGTTTTGGTTATTACTACAGTGGAGTCTCTA TAATTCGAACTTCAACAACTCGAATCTCTCCTTGACTCGAACGAGTTTTC TGGTCCTACAAACTACATAACTCGAGATTTCCTAACTCAATAAATTTGCG TTATAGAGACTCTACTGTACATAGCTTAGACGGTATAGAGTATGATACAG CCGTGTATAGGCTACAACCTAATTTTAACTAGCATCCAAGATTATGCAAT TTGTTGACTTTGGAAAACGACCTTATAAAATTTCGTTAAAATTTTTGAGA TTCTTAAGCTGGGTGTCCACTGAAAAAGAATAAGTTCGTCGCAAATACCA GACATATGATTTTTTCCAGTGGACACCCAGCTTTACTGTTGTGTATATAA GGTATCGGTTTCACGTCTCGCAATCTTAGCGAGAGCCAAGTCTGTCAGAT TTTAGTTGAAATATACAATATTCCCCTTAAAATTTCAGTTAATATGAAAA GTATATATCTTTTCTGATTTAGACGACCGTTCATCCAAGGATTCGTCATC CGACAGCAAACGAGGAAGTAGTACGTCTTCCAAATCAAATGACGGTGGAA GTAAAAACAACAAGCCACCGCGATACCGTGACGATCGCCGATCCAATCGT GATCGTGATCGTGATCGTGATCGTGATAGGTATTACGATAGGCACGATCG ATACAACGACAGTCACGAAAGTCGACATTATTCCGATAACCGAAACAGCA AACGGGGTTCCGATTATAACGAAAAATCGGGAAACCGGGATAAAGAGAAA CGTGACGATTCTTCTTCAACACGACCTCAATCTTCCAAAAACAAAAATAA CGAATCTTCGAGTTCGACAAAAAAATCTTCATCACAGAAAGATGTCTCGG TCACCGTGAAAAAAGACGTTGACAAAGAGCGCGAGAGAGAATTAGAACAA GAACGCTATCGAATGAATTGGCTAGGTAAAGAATAAAAAGACATTGTATT TTATCAGAGGGGTACTAGGATTGGCAAATGAGGGGTATGTGCGGACGGGA CCTCCGGAAACCGATGCTTAGTGAGACTGATTTTTGCTGAAAATACAGAC TTTTTGAAAAAATCTCTTCGATTTTCGGAAAATTTCCTACCCTTAGATGT TAGAGAGCTTTTTTACGTTTTTTTTGTCTCGAAACCGAAAAAAATCCTAA AAATCGTGAATTAGAGCAACTAATTAAACATTTTCTAATGTTTGCAACCC TAGGAGAGACATTGAAAGGTGAAAAACCGACCTTTACCGTCTGCACATAC GCAGCACCTATTTTTGTCTAATTACTCCCCCTCCCCCGTATTGTATAAAG TATTCTACCTTTAACTTAGTTTTTATTTCTGCTCTGTATATTTACTGAAA TTTTGTTTTTGATCTCTTTGTGAATCATTGAATTATCTATCATTGAATTG AATTTTGTGTTGTGATTTGTATAAATATTCTTTGTTTTCATTGAACATTT TTATCGCAATTTCTTTGTGAATCCTGATTATTTTACTGGTTAAGTACACC AGGTTTTAAATCCAAAATCTTTTGTCACATTTTTTTGTCTGTTAATTCAT ATGCTGAATAATAATAGAATTAATCAAATAATCATTACGCTAGTTGAAAA CTTTGAACGCAAATAACGCCCTCCAATTGTGTATAAATGAGTGCCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042810XLOC_042810Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068637-exon-scaffold_486-1575043694:309266..309567TCONS_00068637-exon-scaffold_486-1575043694:309266..309567Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1575043694:308711..308817TCONS_00068637-exon-scaffold_486-1575043694:308711..308817Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1575043694:308342..308448TCONS_00068637-exon-scaffold_486-1575043694:308342..308448Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1575043694:306962..307057TCONS_00068637-exon-scaffold_486-1575043694:306962..307057Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1575043694:304782..304892TCONS_00068637-exon-scaffold_486-1575043694:304782..304892Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1575043694:304242..304315TCONS_00068637-exon-scaffold_486-1575043694:304242..304315Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1575043694:303960..303992TCONS_00068637-exon-scaffold_486-1575043694:303960..303992Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1575043694:302115..302170TCONS_00068637-exon-scaffold_486-1575043694:302115..302170Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1575043694:301674..301740TCONS_00068637-exon-scaffold_486-1575043694:301674..301740Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1575043694:300506..300662TCONS_00068637-exon-scaffold_486-1575043694:300506..300662Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1575043694:300376..300438TCONS_00068637-exon-scaffold_486-1575043694:300376..300438Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1575043694:299696..299908TCONS_00068637-exon-scaffold_486-1575043694:299696..299908Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1575043694:299087..299256TCONS_00068637-exon-scaffold_486-1575043694:299087..299256Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1575043694:298620..298713TCONS_00068637-exon-scaffold_486-1575043694:298620..298713Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1575043694:296621..297795TCONS_00068637-exon-scaffold_486-1575043694:296621..297795Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1510915933:309266..309567TCONS_00068637-exon-scaffold_486-1510915933:309266..309567Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1510915933:308711..308817TCONS_00068637-exon-scaffold_486-1510915933:308711..308817Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1510915933:308342..308448TCONS_00068637-exon-scaffold_486-1510915933:308342..308448Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1510915933:306962..307057TCONS_00068637-exon-scaffold_486-1510915933:306962..307057Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1510915933:304782..304892TCONS_00068637-exon-scaffold_486-1510915933:304782..304892Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1510915933:304242..304315TCONS_00068637-exon-scaffold_486-1510915933:304242..304315Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1510915933:303960..303992TCONS_00068637-exon-scaffold_486-1510915933:303960..303992Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1510915933:302115..302170TCONS_00068637-exon-scaffold_486-1510915933:302115..302170Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1510915933:301674..301740TCONS_00068637-exon-scaffold_486-1510915933:301674..301740Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1510915933:300506..300662TCONS_00068637-exon-scaffold_486-1510915933:300506..300662Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1510915933:300376..300438TCONS_00068637-exon-scaffold_486-1510915933:300376..300438Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1510915933:299696..299908TCONS_00068637-exon-scaffold_486-1510915933:299696..299908Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1510915933:299087..299256TCONS_00068637-exon-scaffold_486-1510915933:299087..299256Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1510915933:298620..298713TCONS_00068637-exon-scaffold_486-1510915933:298620..298713Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1510915933:296621..297795TCONS_00068637-exon-scaffold_486-1510915933:296621..297795Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1491911889:309266..309567TCONS_00068637-exon-scaffold_486-1491911889:309266..309567Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1491911889:308711..308817TCONS_00068637-exon-scaffold_486-1491911889:308711..308817Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1491911889:308342..308448TCONS_00068637-exon-scaffold_486-1491911889:308342..308448Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1491911889:306962..307057TCONS_00068637-exon-scaffold_486-1491911889:306962..307057Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1491911889:304782..304892TCONS_00068637-exon-scaffold_486-1491911889:304782..304892Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1491911889:304242..304315TCONS_00068637-exon-scaffold_486-1491911889:304242..304315Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1491911889:303960..303992TCONS_00068637-exon-scaffold_486-1491911889:303960..303992Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1491911889:302115..302170TCONS_00068637-exon-scaffold_486-1491911889:302115..302170Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1491911889:301674..301740TCONS_00068637-exon-scaffold_486-1491911889:301674..301740Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1491911889:300506..300662TCONS_00068637-exon-scaffold_486-1491911889:300506..300662Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1491911889:300376..300438TCONS_00068637-exon-scaffold_486-1491911889:300376..300438Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1491911889:299696..299908TCONS_00068637-exon-scaffold_486-1491911889:299696..299908Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1491911889:299087..299256TCONS_00068637-exon-scaffold_486-1491911889:299087..299256Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1491911889:298620..298713TCONS_00068637-exon-scaffold_486-1491911889:298620..298713Clytia hemisphaericaexon
TCONS_00068637-exon-scaffold_486-1491911889:296621..297795TCONS_00068637-exon-scaffold_486-1491911889:296621..297795Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_486supercontigscaffold_486:296621..309567 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.876 5.29757 2.25955 3.31592 14.3531 10.6331 10.8329 13.6111 2.70936 2.89309 2.92043 1.47675 2.13831 1.99093 1.76273 1.41876 1.91425 2.21796 1.0607 1.3566 1.6079 0.941134 2.28814 2.19582 5.83267 7.22398 1.06415 0.486726 1.23055 1.37911
Blast
BLAST of TCONS_00068637 vs. Swiss-Prot (Human)
Match: REN3B (Regulator of nonsense transcripts 3B OS=Homo sapiens GN=UPF3B PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 7.821e-28
Identity = 73/161 (45.34%), Postives = 107/161 (66.46%), Query Frame = 3
Query:  300 KLVIRRLPTSLNEETLKEELGNIPEYEYFYFTTGDTSFGMQPYSRAYISFKNYDDVYDFRNKFDGHLFYDTRGREFSAVVEFAPCQ-LVPKERQKKDHKTGTLEKDPEFIQFLESLDKEEEKLPSXXXXXXXXXXXXXXDKNK---VKFTTPLIDYLKEKR 770
            K+VIRRLP +L +E L+E L  +PE++YF F + DTS     Y+RAYI+FKN +D+  FR++FDG++F D +G+E+ A+VEFAP Q    K+ +K+D K GT++ DPE+ +FLES   + EK+ S    + E   A    KN+    K TTPL+ +LK K+
Sbjct:   52 KVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYATDNEKMTSTPETLLEEIEA----KNRELIAKKTTPLLSFLKNKQ 208          
The following BLAST results are available for this feature:
BLAST of TCONS_00068637 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
REN3B7.821e-2845.34Regulator of nonsense transcripts 3B OS=Homo sapie... [more]
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