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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068608 ID=TCONS_00068608|Name=TCONS_00068608|organism=Clytia hemisphaerica|type=transcript|length=2245bp
CCCAGATTATGTATAGTTTGCAATAtgaattttaaaactaaaataaaatt
aaccTAAATAATCACTATAGTACTAAATTtagattggaaaaaaaaatcaa
gtaaacattcaaaatagATCAGTgcatcaaaagaaaatcaaaattaaaat
tataaacaaataaatttgATCAACTAATTATTATCAGGCCATACCTTTTT
TTGCTCACCTTGTAGTATACAAGAAACTTTAGCTGGTCATTTAAAAAATC
TATCCTTAATCGACTTGGGTAAGTTCATTTGTACCAAATCATTGATGGAA
TAATCTAATAATACAACTTTAAGTGCAGAATGTAGCAGTCGTTCGACCAG
TCTtgttttcaatttgaaaacttGTCCAAACAATTTATTGTCAACGTCGC
TATAAAACACCACTACTTCATTCGAGCACCAATTCAACTGGACATTTCTA
ACAGAGATATTTGGTCTACTGACATCAGATGTTATCTTTTGTAAGAGATG
ACCTGTGAAAGGGTCGATCAAATAAACATCTCGCCTTGCCAGTATCAATA
AAGATGTGCCAGAAGTCACTTGATGAAATAGCTTCTGGCAACGAAAACTG
AAACTAAGATGTTTTGGTATGAAATCTGAAACATTAACTGTAGTTATCAA
GGACAATGTTTTCTCCAAGTAATTAATGCTATAAACGTTTAATTTGGTCC
GTTTCTCagcaaaatgaatcaaaatttcACCATGCTTCAAATCATGAGCC
CATTCAAAGCGGAAGAACATTTCTTTGATATAATGTTTTGCAATTACACT
TTGCGTGTGCAAGGAATAAACGACTACACCATCTACTAAGAACATGAGTA
TTTTATCAGCATTGatgttaaaaacaaaatcattcgACCAAACTCCCATT
GACATTGCGTCAATGGTCAGAACTCTTTCCACGGATAAACAATTATCTGA
AGAGAAAAGAGATCTGAATATATGAACATCGCGTTTGTGTTCCTTATTTT
CTTTGTTGAAGGTTTTGACCATAAGACTTAAAGTCTTTTCATTCGTTGAT
AGCTTTATATCAAAGTCCTTCGCGTAACAGTGCTCCTCTTCTAACTCACA
AATAGTTCCCAGGTCTCTTCCTGTTCTATCCATGGCGGGGTTAAAATCAT
CAACTAACTGACATAAAGTCAAAGATATAGATCGTCTGTTTTTATGTTCA
ACtgcaaaaataacaaaatcatGACTTGCGTTGATGGCACTACTCAATGA
ATTCTTTGGTGAATAGTAAAAACCTTTGCGACACTTTAAAGTCAGTTTAT
TGCTATTATCGATTCGATTGTAAACCCAAACAATGTTTCTGATAAAATGA
CTTTGACTGGTCCATTCAGATACTGTAAAAGTGTTATTATTAAACGATGC
ATCCATTGATTTACGTAAATTGCCCACTATCTTCCCTTCGATAACAAAAT
GGTTTGGGGTAATGTTACCAGTATTTTCTGGTATCAATCGAACTCTTGGT
AATGAATCATCATTTAAACCAAGCAGTGCAGTTTTCATTGCTAAAAGATG
ATTTTTTAATTATATTAAttctaaaagaaattaaaaatcacATATCAAAA
TAATAGCACTGTTTTGGTCAAGTAATTATCATAAAGTTGGCTGGAGAAGA
GCCTCGGACATGacaagaatttatttttgaagataCATTGCACTTAGACA
GCTAACTCAATTCCTGTTTTTGTATAATGGTCACAGAATACAGTATAGTA
TCATGGCCCCAAATATATGTCGGTTAAATTTGAATACACTCAACTTATGT
AAGGACACCGCGCAGCGGAATGGGGCTTTAAAACATAACTGGTCGTATTT
TAATTGTTTAGAAATCTCAAGAAAGGCCTGAAATTGatatcaaagaaaaa
gaatgcCTGGGAGCTAAAAAgagaaatatattttcaacaaaaagttgATA
ATTGTTTCGTTTAAGTGGATACGACACCTATGCTTATCTTACTCAAAATT
TCCTACTTTTTCCAACGATAGCTGGAAGAGCTTCTCGAGATGTCTTTGTT
TGATTTAAGTTTCCACTTTTCCCCTTCTTTCAGCGCTCCCACAATTGAAT
CTTCTGTTACTCTTCTTCACGTTGCCGTATCAGAGTATCTCAAATACTCT
CTGCCTAATAAGcatccccccgctaattaattttttttcgaaaatcttcc
acctaggacatttttattccagttttaaattcagttggaaaaaag Run BLAST on NCBI transcript from alignment at scaffold_486:66638..68882+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068608 ID=TCONS_00068608|Name=TCONS_00068608|organism=Clytia hemisphaerica|type=transcript|length=2245bp|location=Sequence derived from alignment at scaffold_486:66638..68882+ (Clytia hemisphaerica)
CCCAGATTATGTATAGTTTGCAATAtgaattttaaaactaaaataaaatt
aaccTAAATAATCACTATAGTACTAAATTtagattggaaaaaaaaatcaa
gtaaacattcaaaatagATCAGTgcatcaaaagaaaatcaaaattaaaat
tataaacaaataaatttgATCAACTAATTATTATCAGGCCATACCTTTTT
TTGCTCACCTTGTAGTATACAAGAAACTTTAGCTGGTCATTTAAAAAATC
TATCCTTAATCGACTTGGGTAAGTTCATTTGTACCAAATCATTGATGGAA
TAATCTAATAATACAACTTTAAGTGCAGAATGTAGCAGTCGTTCGACCAG
TCTtgttttcaatttgaaaacttGTCCAAACAATTTATTGTCAACGTCGC
TATAAAACACCACTACTTCATTCGAGCACCAATTCAACTGGACATTTCTA
ACAGAGATATTTGGTCTACTGACATCAGATGTTATCTTTTGTAAGAGATG
ACCTGTGAAAGGGTCGATCAAATAAACATCTCGCCTTGCCAGTATCAATA
AAGATGTGCCAGAAGTCACTTGATGAAATAGCTTCTGGCAACGAAAACTG
AAACTAAGATGTTTTGGTATGAAATCTGAAACATTAACTGTAGTTATCAA
GGACAATGTTTTCTCCAAGTAATTAATGCTATAAACGTTTAATTTGGTCC
GTTTCTCagcaaaatgaatcaaaatttcACCATGCTTCAAATCATGAGCC
CATTCAAAGCGGAAGAACATTTCTTTGATATAATGTTTTGCAATTACACT
TTGCGTGTGCAAGGAATAAACGACTACACCATCTACTAAGAACATGAGTA
TTTTATCAGCATTGatgttaaaaacaaaatcattcgACCAAACTCCCATT
GACATTGCGTCAATGGTCAGAACTCTTTCCACGGATAAACAATTATCTGA
AGAGAAAAGAGATCTGAATATATGAACATCGCGTTTGTGTTCCTTATTTT
CTTTGTTGAAGGTTTTGACCATAAGACTTAAAGTCTTTTCATTCGTTGAT
AGCTTTATATCAAAGTCCTTCGCGTAACAGTGCTCCTCTTCTAACTCACA
AATAGTTCCCAGGTCTCTTCCTGTTCTATCCATGGCGGGGTTAAAATCAT
CAACTAACTGACATAAAGTCAAAGATATAGATCGTCTGTTTTTATGTTCA
ACtgcaaaaataacaaaatcatGACTTGCGTTGATGGCACTACTCAATGA
ATTCTTTGGTGAATAGTAAAAACCTTTGCGACACTTTAAAGTCAGTTTAT
TGCTATTATCGATTCGATTGTAAACCCAAACAATGTTTCTGATAAAATGA
CTTTGACTGGTCCATTCAGATACTGTAAAAGTGTTATTATTAAACGATGC
ATCCATTGATTTACGTAAATTGCCCACTATCTTCCCTTCGATAACAAAAT
GGTTTGGGGTAATGTTACCAGTATTTTCTGGTATCAATCGAACTCTTGGT
AATGAATCATCATTTAAACCAAGCAGTGCAGTTTTCATTGCTAAAAGATG
ATTTTTTAATTATATTAAttctaaaagaaattaaaaatcacATATCAAAA
TAATAGCACTGTTTTGGTCAAGTAATTATCATAAAGTTGGCTGGAGAAGA
GCCTCGGACATGacaagaatttatttttgaagataCATTGCACTTAGACA
GCTAACTCAATTCCTGTTTTTGTATAATGGTCACAGAATACAGTATAGTA
TCATGGCCCCAAATATATGTCGGTTAAATTTGAATACACTCAACTTATGT
AAGGACACCGCGCAGCGGAATGGGGCTTTAAAACATAACTGGTCGTATTT
TAATTGTTTAGAAATCTCAAGAAAGGCCTGAAATTGatatcaaagaaaaa
gaatgcCTGGGAGCTAAAAAgagaaatatattttcaacaaaaagttgATA
ATTGTTTCGTTTAAGTGGATACGACACCTATGCTTATCTTACTCAAAATT
TCCTACTTTTTCCAACGATAGCTGGAAGAGCTTCTCGAGATGTCTTTGTT
TGATTTAAGTTTCCACTTTTCCCCTTCTTTCAGCGCTCCCACAATTGAAT
CTTCTGTTACTCTTCTTCACGTTGCCGTATCAGAGTATCTCAAATACTCT
CTGCCTAATAAGcatccccccgctaattaattttttttcgaaaatcttcc
acctaggacatttttattccagttttaaattcagttggaaaaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068608-exon-scaffold_486-1491911889:66638..68882 | TCONS_00068608-exon-scaffold_486-1491911889:66638..68882 | Clytia hemisphaerica | exon |
| TCONS_00068608-exon-scaffold_486-1510915933:66638..68882 | TCONS_00068608-exon-scaffold_486-1510915933:66638..68882 | Clytia hemisphaerica | exon |
| TCONS_00068608-exon-scaffold_486-1575043694:66638..68882 | TCONS_00068608-exon-scaffold_486-1575043694:66638..68882 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_486 | supercontig | scaffold_486:66638..68882 + |
Blast
The following BLAST results are available for this feature:
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