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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068603 ID=TCONS_00068603|Name=TCONS_00068603|organism=Clytia hemisphaerica|type=transcript|length=1287bp
TCCCTGCATCTGAAGAATCGAACGAAATGACTTCTGCTTCAACAAATAAG
GATCAAGTCGAGAGTCCGTTGAATGCAGATTCCCAAACCCTCAGTCCAAA
GGACCAAAATCAGGATCCAGCTGAGCAAATGTCTAGAAAACGTCGAAATA
TCGAAGAAAGTGACGACACTGTTCCTACTAATAAGTTTGCTAAAATTGAG
GAACGTTTCGACCTGTCTAACAAAGACAAAACAAACTCTTGGAGTATTAA
ATCTGATCTTGCGGAGTATGCCATTAAACAGATGAACTCCTACATTAATG
ATGGTGATATAAAGGATGAAATTTTATATCAGTTTCCGATACCAGACAAT
CTAAATAACAAAAAGGAAATGGATTCCAATATTAGATCGCTTCTATCTGA
AATGAGAGCGAAAGAAACTTTGTCGCTTGACAAAGCGTTTGAATCAGTCC
AAGACAAAGTCTTGAATGTTTTTGGACCCCTGTCCCAAGTATGGGAATTC
TTGGAGATCCAGAAGGATCAGGCAATCGAGCAGACCTCAAACATGTCGGA
GGAGGAGTTTACATCAGACATGGACGACATGCTTCGCTCAGCAAAAGACT
GTGCAAGACTGATAGACATGACAGTCACCATGCTTGGACAAGCCTTTAAC
AGCTTATCTTATTACAGAAGAAGGAATGCATTGTTGTCAATCCTCAAAGG
GGACAAAACGAAAGTGAAGGAAATGATGAAGGAGAACAAAGATATCCTTC
AAGAGAATACGTCTTCTAATCGCCTTTTTGGAgagaaatttgatgaaaag
atGGTGGAAGTCGTTAAACTcaagaagaaatcaaaagaatttttcaatgt
AATGGATGGCAAAACGAAATCGTCCGTTAATAAACAGAACAGAATTGGGC
TCAACCAGTCCTTTCGTGGGGGCCCCCTACCCGGTACAAGTGGAAGGGGG
CAGAATTTTTTCCAAGCCAACCTCAAAGTGGAAACAACAGAATTGGTTAT
GGCCCGCCAGGCGTAAAACCCCGTGGACGCGGACGTGGTCGTGGGCGTGG
TGGTTATCGCGGATGGCGCTGATTACAAACTAGTTTTTTCAATCAAAGAT
AGAACCTGAAACCTAATTACTTCTCGTTATTTTCTCTGCATTCCATTCTT
ATTTTGGCCAAACTAGGGAAAATCATCCTTAATAAAGTATTCGATGTTTC
GACCATAGTAAATAAAAAACGTCTTGATATGTATCTTTTTTCGGAAGTCT
TGGAATctgaattatatttttctaaaaacgtTACTTG Run BLAST on NCBI protein sequence of TCONS_00068603-protein >TCONS_00068603-protein ID=TCONS_00068603-protein|Name=TCONS_00068603-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp
PASEESNEMTSASTNKDQVESPLNADSQTLSPKDQNQDPAEQMSRKRRNI
EESDDTVPTNKFAKIEERFDLSNKDKTNSWSIKSDLAEYAIKQMNSYIND
GDIKDEILYQFPIPDNLNNKKEMDSNIRSLLSEMRAKETLSLDKAFESVQ
DKVLNVFGPLSQVWEFLEIQKDQAIEQTSNMSEEEFTSDMDDMLRSAKDC
ARLIDMTVTMLGQAFNSLSYYRRRNALLSILKGDKTKVKEMMKENKDILQ
ENTSSNRLFGEKFDEKMVEVVKLKKKSKEFFNVMDGKTKSSVNKQNRIGL
NQSFRGGPLPGTSGRGQNFFQANLKVETTELVMARQA Run BLAST on NCBI transcript from alignment at scaffold_486:36835..40788+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068603 ID=TCONS_00068603|Name=TCONS_00068603|organism=Clytia hemisphaerica|type=transcript|length=3954bp|location=Sequence derived from alignment at scaffold_486:36835..40788+ (Clytia hemisphaerica)
TCCCTGCATCTGAAGAATCGAACGAAATGACTTCTGCTTCAACAAATAAG
GATCAAGTCGAGAGTCCGTTGAATGCAGATTCCCAAACCCTCAGTCCAAA
GGACCAAAATCAGGATCCAGCTGAGCAAATGTCTAGAAAACGTCGAAATA
TCGAAGAAAGTGACGACACTGTTCCTACTAATAAGTTTGCTAAAATTGAG
GAACGTTTCGACCTGTCTAACAAAGACAAAACAAACTCTTGGAGTATTAA
ATCTGATCTTGCGGAGTATGCCATTAAACAGATGAACTCCTACATTAATG
ATGGTGATATAAAGGATGAAATTTTATATCAGTTTCCGATACCAGACAAT
CTAAATAACAAAAAGGAAATGGATTCCAATATTAGATCGCTTCTATCTGA
AATGAGAGCGAAAGAAACTTTGTCGCTTGACAAAGCGTTTGAATCAGTCC
AAGACAAAGTCTTGAATGTTTTTGGACCCCTGTCCCAAGTATGGGAATTC
TTGGAGATCCAGAAGGATCAGGCAATCGAGCAGACCTCAAACATGTCGGA
GGAGGAGTTTACATCAGACATGGACGACATGCTTCGCTCAGCAAAAGACT
GTGCAAGACTGATAGACATGACAGTCACCATGCTTGGACAAGCCTTTAAC
AGCTTATCTTATTACAGAAGAAGGAATGCATTGTTGTCAATCCTCAAAGG
GGACAAAACGAAAGTGAAGGAAATGATGAAGGAGAACAAAGATATCCTTC
AAGAGAATACGTCTTCTAATCGCCTTTTTGGAgagaaatttgatgaaaag
atGGTGGAAGTCGTTAAACTcaagaagaaatcaaaagaatttttcaatgt
AATGGATGGCAAAACGAAATCGTCCGTTAATAAACAGAACAGAATTGGGC
TCAACCAGTCCTTTCGTGGGGGCCCCCTACCCGGTACAAGTGGAAGGGGG
CAGAATTTTTTCCAAGCCAACCTCAAAGTGGAAACAACAGAATTGGTAAG
TCCAACTTCTTCTTCATTACAAACAAATTTAGTACCAATTTTGTCTGTTC
AGGACTATCCAAAAGTCCATCGATTAGTGAAAAACCTGTTTCCAGTCAAG
TTGAGTCAGAGTCTACCACTTGCCGGAAGGgtaaaatttttcatcaaaaa
ctgGGAAAAACTGACAAAGGACCCCTCAGTTCTAGAGATAGTTCAAGGTT
acaaaattccatttatagaCACTCCACATCAAACTTTTTTGCCCAAAGCA
GGCAACTTATCCAAAGAAGAAAAGGAACTAGTGGAACAGGAAATAGAACA
AATGCATGCAGCAGTTGAAAGGTGCAATAACAAAAGTGAAACCTTGCAAA
GACCAGTTTCTCAGCAACATTTTCACAGTTCCCAAAAAAGATGGGGGGAA
CAGACCTGTgataaatttaaaacatttgaaCAGTTTCATTCACTGCCCTC
ATTTCAAGATGGAGGGGTTGTTCCTTGTAAAAGAACTACTTTCACCCAAC
GATTGGATGTGCAAAGTGGATTTGAAGGATGCCTACTTCTCCATACCCAT
CCATCAGAATTCACAGAAATTCTTACGTTTCGAATGGGAAGGTTCACTTT
ATCAATTCCTCAGCCTGTGTTTTGGCCTGTCTCCTGCTCCACTAGTATTC
acaaaattattgaaagttcCAATAACACTCCTAAGAAAATTACAGATAAG
ATTGATAATTTATCTGGACGACATTCTTTTGATGGCTTCATCCAAGGAGG
AATTGGAGATAGCCAGGGATacattgatttttctatttcaacATCTGGGT
TTCGTAATCAATGCGAAAAAGTCAGAATTGACTCCTACGAAAAAGATAGA
ATTTTTAGGGATCATTATAGATTCAGTGAAGATGGAAATGTCTCTATCAG
AGGAAAAAGTTCAGAAAATTATTGTGAAATGCTTGAAAATGCTGgacaag
aaaaaagtttctataAGGGAAGTTTCTCAGCTGATAGGGACATTATCATC
CACAACAATGGCAATCCTGCCAGCTCCTCTCCAGTACAGGTTTATACAAA
AACAAGTAATTCAAGAGTTGAACTTTTATCTATCATACGAGAAACAGATT
GTACTCTCCCCCCAGGGGAGAGCAGAAATAGAATGGTGGATAAACAACAT
ACGTTTGAACAATGGAAGGTCTCTACTTTGGAAACCACCCCAGTTACTGA
TAAAATCAGATGCCTCAAAGGAAGGGTGGGGAGCTTACTGCCAAGGAAAG
AAGACCGGGGGACCTTGGTCAGAAAGGGAAAGGGACCTGCACATAAATAT
TCTGGAATTAAAAGCAGCAAACTTTGCCATATTGACATTCACCCAAAACA
AGAGTCATCTGAACAGCATTCATATTCAGATAGACAACATGACTGCCCTC
TCCTACCTAGTGAAAATGGGAGGGACAAACAACCAGGAATTAGTGAGAAT
AAGCAAGCAAATTTGGAATTACTTAATTTCCAAGGGGATCACACTTACTG
TAGAATATCTTCCAGGGATATTAAACAAGGAAGCGGATTTCGAGTCCAGA
AATGCGAGGGATTGCAGCGAGTGGAAACTAGACCCCGGAGATAGACCTTT
TTGCGTCAAGGGTCTCCAAAGAGCTGAAAAAGTATCTCTCGTGCTTTCCC
CCGTTCAATCTGATAGGAAAGGTGCTAGCAAAAGTTCAGAGGGAACAGTC
ATACTTAATTCTAATAACACCAGCTTGGCAAACTCAGTCTTGGTTTCCAA
AACTAATGGAAATGGCAGTTGCAATTCCAGTTCTTCTTCCCTCATACGAA
AGCCTTTTGAGCAACCCAAAAAAGGAAATTCATCCATTGTTAGAAAACCA
CTACTTAAGACTCCTGGCATGGAAAGTTTCAGGAAAAAGGTATCTTCAGA
AGGAATTTCGGAAAGAGCTTCCAATCTCATCTCCAATGCAAGAAGAGTTG
GAACAATATCTGATTACGAATCGGCCTGGAGAAAGTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTGGTGGCTACGAGCAATAGCTTTCAGCTATTCTCTTAGCCTGGATT
CCTCGATGCGAGCGAGATCGGGCTATACTCCAATATTAGATCGTTTGTTT
ctattttatgaaataaaattgaggATTACGTAAGGGCGCGAAGCGCCTGA
AATGTAATCCagattttatgaataaaatagAAACAAACGATCTAATATTC
CCGCCCACCCGCTCCTGGCATCCttgtttatttctattttattctcTTGT
GTATTTTTTCAGGTTATGGCCCGCCAGGCGTAAAACCCCGTGGACGCGGA
CGTGGTCGTGGGCGTGGTGGTTATCGCGGATGGCGCTGATTACAAACTAG
TTTTTTCAATCAAAGATAGAACCTGAAACCTAATTACTTCTCGTTATTTT
CTCTGCATTCCATTCTTATTTTGGCCAAACTAGGGAAAATCATCCTTAAT
AAAGTATTCGATGTTTCGACCATAGTAAATAAAAAACGTCTTGATATGTA
TCTTTTTTCGGAAGTCTTGGAATctgaattatatttttctaaaaacgtTA
CTTG Coding sequence (CDS) from alignment at scaffold_486:36835..40788+ >TCONS_00068603 ID=TCONS_00068603|Name=TCONS_00068603|organism=Clytia hemisphaerica|type=CDS|length=2028bp|location=Sequence derived from alignment at scaffold_486:36835..40788+ (Clytia hemisphaerica)
CCTGCATCTGAAGAATCGAACGAAATGACTTCTGCTTCAACAAATAAGGA
TCAAGTCGAGAGTCCGTTGAATGCAGATTCCCAAACCCTCAGTCCAAAGG
ACCAAAATCAGGATCCAGCTGAGCAAATGTCTAGAAAACGTCGAAATATC
GAAGAAAGTGACGACACTGTTCCTACTAATAAGTTTGCTAAAATTGAGGA
ACGTTTCGACCTGTCTAACAAAGACAAAACAAACTCTTGGAGTATTAAAT
CTGATCTTGCGGAGTATGCCATTAAACAGATGAACTCCTACATTAATGAT
GGTGATATAAAGGATGAAATTTTATATCAGTTTCCGATACCAGACAATCT
AAATAACAAAAAGGAAATGGATTCCAATATTAGATCGCTTCTATCTGAAA
TGAGAGCGAAAGAAACTTTGTCGCTTGACAAAGCGTTTGAATCAGTCCAA
GACAAAGTCTTGAATGTTTTTGGACCCCTGTCCCAAGTATGGGAATTCTT
GGAGATCCAGAAGGATCAGGCAATCGAGCAGACCTCAAACATGTCGGAGG
AGGAGTTTACATCAGACATGGACGACATGCTTCGCTCAGCAAAAGACTGT
GCAAGACTGATAGACATGACAGTCACCATGCTTGGACAAGCCTTTAACAG
CTTATCTTATTACAGAAGAAGGAATGCATTGTTGTCAATCCTCAAAGGGG
ACAAAACGAAAGTGAAGGAAATGATGAAGGAGAACAAAGATATCCTTCAA
GAGAATACGTCTTCTAATCGCCTTTTTGGAgagaaatttgatgaaaagat
GGTGGAAGTCGTTAAACTcaagaagaaatcaaaagaatttttcaatgtAA
TGGATGGCAAAACGAAATCGTCCGTTAATAAACAGAACAGAATTGGGCTC
AACCAGTCCTTTCGTGGGGGCCCCCTACCCGGTACAAGTGGAAGGGGGCA
GAATTTTTTCCAAGCCAACCTCAAAGTGGAAACAACAGAATTGGTTATGG
CCCGCCAGGCGTAACCTGCATCTGAAGAATCGAACGAAATGACTTCTGCT
TCAACAAATAAGGATCAAGTCGAGAGTCCGTTGAATGCAGATTCCCAAAC
CCTCAGTCCAAAGGACCAAAATCAGGATCCAGCTGAGCAAATGTCTAGAA
AACGTCGAAATATCGAAGAAAGTGACGACACTGTTCCTACTAATAAGTTT
GCTAAAATTGAGGAACGTTTCGACCTGTCTAACAAAGACAAAACAAACTC
TTGGAGTATTAAATCTGATCTTGCGGAGTATGCCATTAAACAGATGAACT
CCTACATTAATGATGGTGATATAAAGGATGAAATTTTATATCAGTTTCCG
ATACCAGACAATCTAAATAACAAAAAGGAAATGGATTCCAATATTAGATC
GCTTCTATCTGAAATGAGAGCGAAAGAAACTTTGTCGCTTGACAAAGCGT
TTGAATCAGTCCAAGACAAAGTCTTGAATGTTTTTGGACCCCTGTCCCAA
GTATGGGAATTCTTGGAGATCCAGAAGGATCAGGCAATCGAGCAGACCTC
AAACATGTCGGAGGAGGAGTTTACATCAGACATGGACGACATGCTTCGCT
CAGCAAAAGACTGTGCAAGACTGATAGACATGACAGTCACCATGCTTGGA
CAAGCCTTTAACAGCTTATCTTATTACAGAAGAAGGAATGCATTGTTGTC
AATCCTCAAAGGGGACAAAACGAAAGTGAAGGAAATGATGAAGGAGAACA
AAGATATCCTTCAAGAGAATACGTCTTCTAATCGCCTTTTTGGAgagaaa
tttgatgaaaagatGGTGGAAGTCGTTAAACTcaagaagaaatcaaaaga
atttttcaatgtAATGGATGGCAAAACGAAATCGTCCGTTAATAAACAGA
ACAGAATTGGGCTCAACCAGTCCTTTCGTGGGGGCCCCCTACCCGGTACA
AGTGGAAGGGGGCAGAATTTTTTCCAAGCCAACCTCAAAGTGGAAACAAC
AGAATTGGTTATGGCCCGCCAGGCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068603-exon-scaffold_486-1491911889:36835..37829 | TCONS_00068603-exon-scaffold_486-1491911889:36835..37829 | Clytia hemisphaerica | exon |
| TCONS_00068603-exon-scaffold_486-1510915933:36835..37829 | TCONS_00068603-exon-scaffold_486-1510915933:36835..37829 | Clytia hemisphaerica | exon |
| TCONS_00068603-exon-scaffold_486-1575043694:36835..37829 | TCONS_00068603-exon-scaffold_486-1575043694:36835..37829 | Clytia hemisphaerica | exon |
| TCONS_00068603-exon-scaffold_486-1491911889:40497..40788 | TCONS_00068603-exon-scaffold_486-1491911889:40497..40788 | Clytia hemisphaerica | exon |
| TCONS_00068603-exon-scaffold_486-1510915933:40497..40788 | TCONS_00068603-exon-scaffold_486-1510915933:40497..40788 | Clytia hemisphaerica | exon |
| TCONS_00068603-exon-scaffold_486-1575043694:40497..40788 | TCONS_00068603-exon-scaffold_486-1575043694:40497..40788 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_486 | supercontig | scaffold_486:36835..40788 + |
Blast
The following BLAST results are available for this feature:
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