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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068577 ID=TCONS_00068577|Name=TCONS_00068577|organism=Clytia hemisphaerica|type=transcript|length=1350bp
GGTTcacaaatattttgttttagttcatCGCTataaattcatcaaaaatt
taaaatgttttcatttcacATATAGATGCAACATGACTGTAATGTTTCAA
tttaatctttgtttttcacaAATATCCTGGTTCATCATTTCTATAAGATC
ATCCAAACTTTCAAATGTTTTCACTTTTACATCATTGAGATGGCAATCTT
TCATATCCAAAGATGCCCAACGGTAATGGTTGATGTTTGATCTTGAAAAA
GATTCACATCCTTCATCGTCTCGAATATTGAAAGAAACGTTTTGTTCAAA
TTCATAAAAACTATCGCTCACAGTGGTATAAAAAAGATAGCTTAACTTTT
TAGTAAATTGCCTTACatgattgataaaagattttACATCATCATTATAG
TAGTGTATCACGATCAACAATAACGGTTGTGTCTTTTTTATTTCACGCGG
AGTGTTTACTTTGTTCAATAAGGCAACAAAATACGGAAAATAAAAAGCAA
TAGGGTTTTTCATGTATATATTGATCATAGATATTTCATTCATACAAGTT
TCATTAAACAGGTCATCTCTTGAGAGAAGGTATCGTTGCATGTATTCGCA
TCGGTCGAAATCTGGTTCTTTTATCACATCAGTTAGATCTTTGAGTAACA
TTTTTGTTGTCTCAACAGGTAAATTCCATTTCCAATCATATGCAAAAGAG
ATTCGATGGGCAGGCAACCAAATAGGAAATTCACAAAGAAGAGTGCTACA
GTGAAAAATTATCTTCCACAATCGATCATCTTGAAGCCTTCGCAAAAAGG
AAATCGTTTCGTCTTTGAAAACCCGTCTTTTTTCTCCGTCCACCATGAAT
GTCCAAAAGGTATGTAAAAAGACCCACTTTTGTGTGAAACTATGTAAATA
GACTAACGTTTGTTTGACAGTGTTAGTTCCCATCACTTCTTCGTTATAAA
GACGAACCAAGAAATTTATCACATTCTTGTGAGCAATATCCTCCGAAGAT
ACTCTGTATTTAATTACGCTTTGAAgaaaattcctttcaaaatgaTTGGC
ATTAAAGTTCGGTCGCCATTGAACAACAAAACCATCACTAGGAAGGTATA
CATTGATCGTGAAGCAATCTTCGTTCCATGTCAAAGGCTCCAAACGTCGC
AAGAGGTCATCCAAAAATTCCAATTCAATAAAATTAGCAATAATGGTTAT
ATTATTTGTTTCAGTGCAAGCCAACATTCCAAACTTTTCAAACTGGAACC
CATTGCAATGAAATGATGATATCAATATGAAGAGAAAACAAGTCACCAAA
AAGGAGATACGAACCATCTTGTAAATACTCGAAAATAATCTCAGTTGTTG Run BLAST on NCBI protein sequence of TCONS_00068577-protein >TCONS_00068577-protein ID=TCONS_00068577-protein|Name=TCONS_00068577-protein|organism=Clytia hemisphaerica|type=polypeptide|length=417bp
QQLRLFSSIYKMVRISFLVTCFLFILISSFHCNGFQFEKFGMLACTETNN
ITIIANFIELEFLDDLLRRLEPLTWNEDCFTINVYLPSDGFVVQWRPNFN
ANHFERNFLQSVIKYRVSSEDIAHKNVINFLVRLYNEEVMGTNTVKQTLV
YLHSFTQKWVFLHTFWTFMVDGEKRRVFKDETISFLRRLQDDRLWKIIFH
CSTLLCEFPIWLPAHRISFAYDWKWNLPVETTKMLLKDLTDVIKEPDFDR
CEYMQRYLLSRDDLFNETCMNEISMINIYMKNPIAFYFPYFVALLNKVNT
PREIKKTQPLLLIVIHYYNDDVKSFINHVRQFTKKLSYLFYTTVSDSFYE
FEQNVSFNIRDDEGCESFSRSNINHYRWASLDMKDCHLNDVKVKTFESLD
DLIEMMNQDICEKQRLN Run BLAST on NCBI transcript from alignment at scaffold_485:406401..407750 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068577 ID=TCONS_00068577|Name=TCONS_00068577|organism=Clytia hemisphaerica|type=transcript|length=1350bp|location=Sequence derived from alignment at scaffold_485:406401..407750 (Clytia hemisphaerica)
CAACAACTGAGATTATTTTCGAGTATTTACAAGATGGTTCGTATCTCCTT
TTTGGTGACTTGTTTTCTCTTCATATTGATATCATCATTTCATTGCAATG
GGTTCCAGTTTGAAAAGTTTGGAATGTTGGCTTGCACTGAAACAAATAAT
ATAACCATTATTGCTAATTTTATTGAATTGGAATTTTTGGATGACCTCTT
GCGACGTTTGGAGCCTTTGACATGGAACGAAGATTGCTTCACGATCAATG
TATACCTTCCTAGTGATGGTTTTGTTGTTCAATGGCGACCGAACTTTAAT
GCCAAtcattttgaaaggaattttcTTCAAAGCGTAATTAAATACAGAGT
ATCTTCGGAGGATATTGCTCACAAGAATGTGATAAATTTCTTGGTTCGTC
TTTATAACGAAGAAGTGATGGGAACTAACACTGTCAAACAAACGTTAGTC
TATTTACATAGTTTCACACAAAAGTGGGTCTTTTTACATACCTTTTGGAC
ATTCATGGTGGACGGAGAAAAAAGACGGGTTTTCAAAGACGAAACGATTT
CCTTTTTGCGAAGGCTTCAAGATGATCGATTGTGGAAGATAATTTTTCAC
TGTAGCACTCTTCTTTGTGAATTTCCTATTTGGTTGCCTGCCCATCGAAT
CTCTTTTGCATATGATTGGAAATGGAATTTACCTGTTGAGACAACAAAAA
TGTTACTCAAAGATCTAACTGATGTGATAAAAGAACCAGATTTCGACCGA
TGCGAATACATGCAACGATACCTTCTCTCAAGAGATGACCTGTTTAATGA
AACTTGTATGAATGAAATATCTATGATCAATATATACATGAAAAACCCTA
TTGCTTTTTATTTTCCGTATTTTGTTGCCTTATTGAACAAAGTAAACACT
CCGCGTGAAATAAAAAAGACACAACCGTTATTGTTGATCGTGATACACTA
CTATAATGATGATGTaaaatcttttatcaatcatGTAAGGCAATTTACTA
AAAAGTTAAGCTATCTTTTTTATACCACTGTGAGCGATAGTTTTTATGAA
TTTGAACAAAACGTTTCTTTCAATATTCGAGACGATGAAGGATGTGAATC
TTTTTCAAGATCAAACATCAACCATTACCGTTGGGCATCTTTGGATATGA
AAGATTGCCATCTCAATGATGTAAAAGTGAAAACATTTGAAAGTTTGGAT
GATCTTATAGAAATGATGAACCAGGATATTtgtgaaaaacaaagattaaa
TTGAAACATTACAGTCATGTTGCATCTATATgtgaaatgaaaacatttta
aatttttgatgaatttatAGCGatgaactaaaacaaaatatttgtgAACC
Coding sequence (CDS) from alignment at scaffold_485:406401..407750 >TCONS_00068577 ID=TCONS_00068577|Name=TCONS_00068577|organism=Clytia hemisphaerica|type=CDS|length=1254bp|location=Sequence derived from alignment at scaffold_485:406401..407750 (Clytia hemisphaerica)
CAACAACTGAGATTATTTTCGAGTATTTACAAGATGGTTCGTATCTCCTT
TTTGGTGACTTGTTTTCTCTTCATATTGATATCATCATTTCATTGCAATG
GGTTCCAGTTTGAAAAGTTTGGAATGTTGGCTTGCACTGAAACAAATAAT
ATAACCATTATTGCTAATTTTATTGAATTGGAATTTTTGGATGACCTCTT
GCGACGTTTGGAGCCTTTGACATGGAACGAAGATTGCTTCACGATCAATG
TATACCTTCCTAGTGATGGTTTTGTTGTTCAATGGCGACCGAACTTTAAT
GCCAAtcattttgaaaggaattttcTTCAAAGCGTAATTAAATACAGAGT
ATCTTCGGAGGATATTGCTCACAAGAATGTGATAAATTTCTTGGTTCGTC
TTTATAACGAAGAAGTGATGGGAACTAACACTGTCAAACAAACGTTAGTC
TATTTACATAGTTTCACACAAAAGTGGGTCTTTTTACATACCTTTTGGAC
ATTCATGGTGGACGGAGAAAAAAGACGGGTTTTCAAAGACGAAACGATTT
CCTTTTTGCGAAGGCTTCAAGATGATCGATTGTGGAAGATAATTTTTCAC
TGTAGCACTCTTCTTTGTGAATTTCCTATTTGGTTGCCTGCCCATCGAAT
CTCTTTTGCATATGATTGGAAATGGAATTTACCTGTTGAGACAACAAAAA
TGTTACTCAAAGATCTAACTGATGTGATAAAAGAACCAGATTTCGACCGA
TGCGAATACATGCAACGATACCTTCTCTCAAGAGATGACCTGTTTAATGA
AACTTGTATGAATGAAATATCTATGATCAATATATACATGAAAAACCCTA
TTGCTTTTTATTTTCCGTATTTTGTTGCCTTATTGAACAAAGTAAACACT
CCGCGTGAAATAAAAAAGACACAACCGTTATTGTTGATCGTGATACACTA
CTATAATGATGATGTaaaatcttttatcaatcatGTAAGGCAATTTACTA
AAAAGTTAAGCTATCTTTTTTATACCACTGTGAGCGATAGTTTTTATGAA
TTTGAACAAAACGTTTCTTTCAATATTCGAGACGATGAAGGATGTGAATC
TTTTTCAAGATCAAACATCAACCATTACCGTTGGGCATCTTTGGATATGA
AAGATTGCCATCTCAATGATGTAAAAGTGAAAACATTTGAAAGTTTGGAT
GATCTTATAGAAATGATGAACCAGGATATTtgtgaaaaacaaagattaaa
TTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068577-exon-scaffold_485-1491911889:406401..407750 | TCONS_00068577-exon-scaffold_485-1491911889:406401..407750 | Clytia hemisphaerica | exon |
| TCONS_00068577-exon-scaffold_485-1510915933:406401..407750 | TCONS_00068577-exon-scaffold_485-1510915933:406401..407750 | Clytia hemisphaerica | exon |
| TCONS_00068577-exon-scaffold_485-1575043694:406401..407750 | TCONS_00068577-exon-scaffold_485-1575043694:406401..407750 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_485 | supercontig | scaffold_485:406401..407750 . |
Blast
The following BLAST results are available for this feature:
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