TCONS_00068576 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068576
Unique NameTCONS_00068576
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length663

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068576 ID=TCONS_00068576|Name=TCONS_00068576|organism=Clytia hemisphaerica|type=transcript|length=663bp
CTCTGAAGTAAGACAGGAAATGCCTCCTTTTCTTTCATCGATACAGTCAA
TGGTTCTAACATTTGGTCAAATGGaattgttgatatctggattGTTtatt
cacttactgttaaatcacaaatgtgttaaataaCTTTAATGTGTTAAATA
ACTTTAACAACACATTTGTTTCGATACTTCCAAGTTTATCAACCAAAATA
GATAAGATATGTCTAGAGTTAAGTAATTTTAATAGCTGCATAGCACAAAA
GTAATTAAGCATTCACGCTACCTTTATATGTCTTGCTCTCTCAAGGGGCT
TTTATCAAACAGCCCATGCGTAAACGTAACAGATCTGAAAATAGGACACt
agatttttggattttgtaaATAACGGTGTTGCAGAGTGTTGATggatttt
atttcaaagtcatttgatttaaaagcctactctaTGCGAAAATAAAAGAT
CCTGTACTTTACAATTCTACATTCATTAACttaaatcaaatgactttgga
ggttctgtAAACTGGTGGCAGAATTGCCATCGCATGACTTTTTAATTTGT
TGTTGGATATGTTTCTCATTACAGTTTTGTGTGCAGGGTGATGAGGCCTC
TAACTTTGTCTTTACTTTTGATTTATGTTGCTTTGGGTAAAAACGGTTGT
TCAATCaatcttt
Run BLAST on NCBI

transcript from alignment at scaffold_485:385210..385872

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068576 ID=TCONS_00068576|Name=TCONS_00068576|organism=Clytia hemisphaerica|type=transcript|length=663bp|location=Sequence derived from alignment at scaffold_485:385210..385872 (Clytia hemisphaerica)
aaagattGATTGAACAACCGTTTTTACCCAAAGCAACATAAATCAAAAGT
AAAGACAAAGTTAGAGGCCTCATCACCCTGCACACAAAACTGTAATGAGA
AACATATCCAACAACAAATTAAAAAGTCATGCGATGGCAATTCTGCCACC
AGTTTacagaacctccaaagtcatttgatttaaGTTAATGAATGTAGAAT
TGTAAAGTACAGGATCTTTTATTTTCGCAtagagtaggcttttaaatcaa
atgactttgaaataaaatccATCAACACTCTGCAACACCGTTATttacaa
aatccaaaaatctaGTGTCCTATTTTCAGATCTGTTACGTTTACGCATGG
GCTGTTTGATAAAAGCCCCTTGAGAGAGCAAGACATATAAAGGTAGCGTG
AATGCTTAATTACTTTTGTGCTATGCAGCTATTAAAATTACTTAACTCTA
GACATATCTTATCTATTTTGGTTGATAAACTTGGAAGTATCGAAACAAAT
GTGTTGTTAAAGTTATTTAACACATTAAAGttatttaacacatttgtgat
ttaacagtaagtgaataAACaatccagatatcaacaattCCATTTGACCA
AATGTTAGAACCATTGACTGTATCGATGAAAGAAAAGGAGGCATTTCCTG
TCTTACTTCAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042775XLOC_042775Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068576-exon-scaffold_485-1491911889:385210..385872TCONS_00068576-exon-scaffold_485-1491911889:385210..385872Clytia hemisphaericaexon
TCONS_00068576-exon-scaffold_485-1510915933:385210..385872TCONS_00068576-exon-scaffold_485-1510915933:385210..385872Clytia hemisphaericaexon
TCONS_00068576-exon-scaffold_485-1575043694:385210..385872TCONS_00068576-exon-scaffold_485-1575043694:385210..385872Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_485supercontigscaffold_485:385210..385872 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0865634	0.105383	0	0	0	0	0	0	0.052044	0	0	0.0887464	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.0883689
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068576 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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