TCONS_00068572 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068572
Unique NameTCONS_00068572
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length424

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068572 ID=TCONS_00068572|Name=TCONS_00068572|organism=Clytia hemisphaerica|type=transcript|length=424bp
TCTAGTCTGCTTTCTTCGCGTACTCTAAATTTGAATCTTTTACCGTCACT
CAATTTATTGATTCTTTCGAATGGAAATGATTCAATTACCATGTCAATTA
GCTTTTTCACACGTGATAATGCAACATAAGTTAAACCATCCATGCTCTCT
TTCTTTCCCAAATCCACTACAACTTTATCCAATGTAAGACCTTGAGATTT
ATGAATAGTTATCGACCATGCAAGTTTCAAAGGTATTTGCATTCTTTCTT
TCTGTACGTTTTCTTCAGATGAAGTTTCTATGATAGGCACAATTGGAACA
CAATTATCTTCATCATCAAAAAAAACTTGGCCCTCTATCAAATTTTACTA
TAACAGCTATAGGAAGCGCAGGTGGCAAGTGGTTTCTTTGGAATATTATG
TCTTTGACAATGCCTAAACTTCCG
Run BLAST on NCBI

transcript from alignment at scaffold_485:291013..291436

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068572 ID=TCONS_00068572|Name=TCONS_00068572|organism=Clytia hemisphaerica|type=transcript|length=424bp|location=Sequence derived from alignment at scaffold_485:291013..291436 (Clytia hemisphaerica)
CGGAAGTTTAGGCATTGTCAAAGACATAATATTCCAAAGAAACCACTTGC
CACCTGCGCTTCCTATAGCTGTTATAGTAAAATTTGATAGAGGGCCAAGT
TTTTTTTGATGATGAAGATAATTGTGTTCCAATTGTGCCTATCATAGAAA
CTTCATCTGAAGAAAACGTACAGAAAGAAAGAATGCAAATACCTTTGAAA
CTTGCATGGTCGATAACTATTCATAAATCTCAAGGTCTTACATTGGATAA
AGTTGTAGTGGATTTGGGAAAGAAAGAGAGCATGGATGGTTTAACTTATG
TTGCATTATCACGTGTGAAAAAGCTAATTGACATGGTAATTGAATCATTT
CCATTCGAAAGAATCAATAAATTGAGTGACGGTAAAAGATTCAAATTTAG
AGTACGCGAAGAAAGCAGACTAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042771XLOC_042771Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068572-exon-scaffold_485-1491911889:291013..291436TCONS_00068572-exon-scaffold_485-1491911889:291013..291436Clytia hemisphaericaexon
TCONS_00068572-exon-scaffold_485-1510915933:291013..291436TCONS_00068572-exon-scaffold_485-1510915933:291013..291436Clytia hemisphaericaexon
TCONS_00068572-exon-scaffold_485-1575043694:291013..291436TCONS_00068572-exon-scaffold_485-1575043694:291013..291436Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_485supercontigscaffold_485:291013..291436 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.26066	6.05151	3.16328	2.66319	1.29811	0.755475	0.642722	0.255422	1.54961	0.506448	2.49071	5.59861	0.242697	0.867157	0.701651	0.648676	0	0.147869	0.219736	0.679308	4.04121	3.60715	0.967317	1.11018	0.199237	1.16041	1.66926	1.80355	1.5996	2.11849
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068572 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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