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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068562 ID=TCONS_00068562|Name=TCONS_00068562|organism=Clytia hemisphaerica|type=transcript|length=1423bp
GGAAAAGCAAATGATACAAAAAGGCTCCCACCAGAAGTCCAATACTAATG
GTAGCTTCCTTTAGGttgtctgccattttgttttcaattccaCGAGGTCA
AAGCACACCGTATGTTTTCCAGTAAATTGATACCCcatcttgaaaacaaa
aacatgaaatGGAAATAGAGAATAAAGATCTGATGGAGTTGATGATTGAA
TAGAATGTTACAAGATGGCAcatcatgaaaaataataaattcgAAGGATT
ATCGGAGTTCGGAGTTATAGTCATCAACAACAAGTCAAAGTGAAGCACGG
AAGGAGATACTCACAAGTGATGGAGAGAAAATTTCTTGCATGCTTGTTCT
TATTAATCGTTCTGTTGAACTTGAACGATGGGAAAAATATCGCTATTCTG
ATTGAGCCTGATGATAACCTAGCTTCAGAGCTGGAATGGTTGGGATCGGA
TATGACCGATAGTCATTCGCTCAATGCTGGTGCATGGCCACGCCCTGGTG
ATGCCAGATCATCTCATGACGCATGGCCGAGACCTGGAAAGAGAGAATTC
TACGGCAACGAAATGTTCGAGAAGAGACCATTCCCAGGGCAACAAATGCA
ATTTAGTTGGCCAAGACCGGGTAAAAAGGAAACTAAAGAAGACACATGGC
CAAGACCCGGTAAGCGGGAAAGTTATTCAGAAGGGGATATGGACAGTCGA
AGCGGTGCATTGCGTCGATCTGAGGAAAAAGAAacgaatgaagatgaaaa
actaGAAAATGCATGGCCTAGACCGGGGAAAAGAGAATTTTACGCAAGCA
GGAAGATGGACGTTCGACCACGAGGTGGACGAGACAGCAAATctcacaaa
atttcaaaacgaaaTTCAGAAGCTATTTCTTATGATGAAATTGATATGAT
GCTTAGAGAAGAAGCATGGCCGAGACCAGGAAAACGAGATTACCACATGT
TGTCAGTGACAAGACCCCGAGGTGGAAAAGACGCCCGACCGAGGGGCGGT
AAAGATTCATTACGCCCTAGAGGAGGTAAAGACGCAAAACCAAGAGGAGG
GAAAGATTCAGTGAGACCTCGAGGCGGAAAAAAAGATTCTTGGCCACGAC
CAGGGAAAGACGCTTTTGTGAACGAAATAAATGGATCACGACCTCGTGGT
GGAAAAGATGCAAGTAAATGGCCAAGACCTGGTAAAAAAGACATCAAATA
ACCAAGATTAGTTTCAGTTTGGTCGACTCCCGTCGCTTTTcaaaagattt
atcaaaagtaGTGTTTagcaattataaaaaattagatGATATTTTTCCAC
ATTTTTCATTCGATATATGTCGGTCAAcggttcattttgaaattttattt
tctgtGATTTTGTATGAACCTTTTGATTTAGATAAAGTTATGAAATAAAT
TGGaatttgaaaattaacaaaTA Run BLAST on NCBI protein sequence of pp1 precursor >TCONS_00068562-protein ID=TCONS_00068562-protein|Name=pp1 precursor|organism=Clytia hemisphaerica|type=polypeptide|length=293bp
MERKFLACLFLLIVLLNLNDGKNIAILIEPDDNLASELEWLGSDMTDSHS
LNAGAWPRPGDARSSHDAWPRPGKREFYGNEMFEKRPFPGQQMQFSWPRP
GKKETKEDTWPRPGKRESYSEGDMDSRSGALRRSEEKETNEDEKLENAWP
RPGKREFYASRKMDVRPRGGRDSKSHKISKRNSEAISYDEIDMMLREEAW
PRPGKRDYHMLSVTRPRGGKDARPRGGKDSLRPRGGKDAKPRGGKDSVRP
RGGKKDSWPRPGKDAFVNEINGSRPRGGKDASKWPRPGKKDIK Run BLAST on NCBI transcript from alignment at scaffold_485:138712..140134 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068562 ID=TCONS_00068562|Name=TCONS_00068562|organism=Clytia hemisphaerica|type=transcript|length=1423bp|location=Sequence derived from alignment at scaffold_485:138712..140134 (Clytia hemisphaerica)
TAtttgttaattttcaaattCCAATTTATTTCATAACTTTATCTAAATCA
AAAGGTTCATACAAAATCacagaaaataaaatttcaaaatgaaccgTTGA
CCGACATATATCGAATGAAAAATGTGGAAAAATATCatctaattttttat
aattgctAAACACtacttttgataaatcttttgAAAAGCGACGGGAGTCG
ACCAAACTGAAACTAATCTTGGTTATTTGATGTCTTTTTTACCAGGTCTT
GGCCATTTACTTGCATCTTTTCCACCACGAGGTCGTGATCCATTTATTTC
GTTCACAAAAGCGTCTTTCCCTGGTCGTGGCCAAGAATCTTTTTTTCCGC
CTCGAGGTCTCACTGAATCTTTCCCTCCTCTTGGTTTTGCGTCTTTACCT
CCTCTAGGGCGTAATGAATCTTTACCGCCCCTCGGTCGGGCGTCTTTTCC
ACCTCGGGGTCTTGTCACTGACAACATGTGGTAATCTCGTTTTCCTGGTC
TCGGCCATGCTTCTTCTCTAAGCATCATATCAATTTCATCATAAGAAATA
GCTTCTGAAtttcgttttgaaattttgtgagATTTGCTGTCTCGTCCACC
TCGTGGTCGAACGTCCATCTTCCTGCTTGCGTAAAATTCTCTTTTCCCCG
GTCTAGGCCATGCATTTTCtagtttttcatcttcattcgtTTCTTTTTCC
TCAGATCGACGCAATGCACCGCTTCGACTGTCCATATCCCCTTCTGAATA
ACTTTCCCGCTTACCGGGTCTTGGCCATGTGTCTTCTTTAGTTTCCTTTT
TACCCGGTCTTGGCCAACTAAATTGCATTTGTTGCCCTGGGAATGGTCTC
TTCTCGAACATTTCGTTGCCGTAGAATTCTCTCTTTCCAGGTCTCGGCCA
TGCGTCATGAGATGATCTGGCATCACCAGGGCGTGGCCATGCACCAGCAT
TGAGCGAATGACTATCGGTCATATCCGATCCCAACCATTCCAGCTCTGAA
GCTAGGTTATCATCAGGCTCAATCAGAATAGCGATATTTTTCCCATCGTT
CAAGTTCAACAGAACGATTAATAAGAACAAGCATGCAAGAAATTTTCTCT
CCATCACTTGTGAGTATCTCCTTCCGTGCTTCACTTTGACTTGTTGTTGA
TGACTATAACTCCGAACTCCGATAATCCTTcgaatttattatttttcatg
atgTGCCATCTTGTAACATTCTATTCAATCATCAACTCCATCAGATCTTT
ATTCTCTATTTCCatttcatgtttttgttttcaagatgGGGTATCAATTT
ACTGGAAAACATACGGTGTGCTTTGACCTCGtggaattgaaaacaaaatg
gcagacaaCCTAAAGGAAGCTACCATTAGTATTGGACTTCTGGTGGGAGC
CTTTTTGTATCATTTGCTTTTCC Coding sequence (CDS) from alignment at scaffold_485:138712..140134 >TCONS_00068562 ID=TCONS_00068562|Name=TCONS_00068562|organism=Clytia hemisphaerica|type=CDS|length=882bp|location=Sequence derived from alignment at scaffold_485:138712..140134 (Clytia hemisphaerica)
TTATTTGATGTCTTTTTTACCAGGTCTTGGCCATTTACTTGCATCTTTTC
CACCACGAGGTCGTGATCCATTTATTTCGTTCACAAAAGCGTCTTTCCCT
GGTCGTGGCCAAGAATCTTTTTTTCCGCCTCGAGGTCTCACTGAATCTTT
CCCTCCTCTTGGTTTTGCGTCTTTACCTCCTCTAGGGCGTAATGAATCTT
TACCGCCCCTCGGTCGGGCGTCTTTTCCACCTCGGGGTCTTGTCACTGAC
AACATGTGGTAATCTCGTTTTCCTGGTCTCGGCCATGCTTCTTCTCTAAG
CATCATATCAATTTCATCATAAGAAATAGCTTCTGAAtttcgttttgaaa
ttttgtgagATTTGCTGTCTCGTCCACCTCGTGGTCGAACGTCCATCTTC
CTGCTTGCGTAAAATTCTCTTTTCCCCGGTCTAGGCCATGCATTTTCtag
tttttcatcttcattcgtTTCTTTTTCCTCAGATCGACGCAATGCACCGC
TTCGACTGTCCATATCCCCTTCTGAATAACTTTCCCGCTTACCGGGTCTT
GGCCATGTGTCTTCTTTAGTTTCCTTTTTACCCGGTCTTGGCCAACTAAA
TTGCATTTGTTGCCCTGGGAATGGTCTCTTCTCGAACATTTCGTTGCCGT
AGAATTCTCTCTTTCCAGGTCTCGGCCATGCGTCATGAGATGATCTGGCA
TCACCAGGGCGTGGCCATGCACCAGCATTGAGCGAATGACTATCGGTCAT
ATCCGATCCCAACCATTCCAGCTCTGAAGCTAGGTTATCATCAGGCTCAA
TCAGAATAGCGATATTTTTCCCATCGTTCAAGTTCAACAGAACGATTAAT
AAGAACAAGCATGCAAGAAATTTTCTCTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068562-exon-scaffold_485-1491911889:138712..140134 | TCONS_00068562-exon-scaffold_485-1491911889:138712..140134 | Clytia hemisphaerica | exon |
| TCONS_00068562-exon-scaffold_485-1510915933:138712..140134 | TCONS_00068562-exon-scaffold_485-1510915933:138712..140134 | Clytia hemisphaerica | exon |
| TCONS_00068562-exon-scaffold_485-1575043694:138712..140134 | TCONS_00068562-exon-scaffold_485-1575043694:138712..140134 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_485 | supercontig | scaffold_485:138712..140134 . |
Blast
The following BLAST results are available for this feature:
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