TCONS_00068560 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068560
Unique NameTCONS_00068560
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length748

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068560 ID=TCONS_00068560|Name=TCONS_00068560|organism=Clytia hemisphaerica|type=transcript|length=748bp
CTTAGTCTAATTTCAAAAGATGGTCTCCCATAGCgcttatgaaatatttt
aaaatactacaaatttagaaatataATGGATTACTCAAAATTCAATGATG
AGGAATCAGTTGTCAATCATTTGTTAAAATCTATAAAAGTCATGGACACT
AATCAGGGGGTAAGAATTACCAATATCATCTGTGTTTAGGCTAAAAATGT
TGATACAAATCAACATTATCCCCGGAAAAAATATACGGCAGGTTAAAATT
GCTAGCGAAAATGAAAACGCTGCAGAAGAAGGCTTCAGACACGAAAAGCT
GTTATTATACTATCTAACATAGGAGAAGAAAATATAGTTAAACCAAACCC
AGAAACTAACAGTTAACTAGATGACCATTATCAGTAAAGCCATAGGTTAA
TGAACTAGTATTCAATCGTACAATATTTATTATTCGAGAATTTTGGGGGT
ACGTATAAATCCCTGTACCTATTGATCAAAATAACCTTTGACTTAACATA
CAATAAATTTTAAACGTTCTTCAAAGAGATGCtttagatattttttcatt
tgcaCACACTTATCAACCAATTCTTTCGATTTAATTTTGTCGAGTTCTCG
GTGAAGCTTGGCATATTCTTTCaccaaaaacaaaagattttggACGTACT
CCGCGTCGTTATCTTTTATGAGTGATTCGACCGATTCGAAATTTAAAGTA
TATAActgttcttgaaatgttcttattctTGATCTCCTCATTGGGGAC
Run BLAST on NCBI

transcript from alignment at scaffold_485:111991..112738

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068560 ID=TCONS_00068560|Name=TCONS_00068560|organism=Clytia hemisphaerica|type=transcript|length=748bp|location=Sequence derived from alignment at scaffold_485:111991..112738 (Clytia hemisphaerica)
GTCCCCAATGAGGAGATCAagaataagaacatttcaagaacagTTATATA
CTTTAAATTTCGAATCGGTCGAATCACTCATAAAAGATAACGACGCGGAG
TACGTccaaaatcttttgtttttggtGAAAGAATATGCCAAGCTTCACCG
AGAACTCGACAAAATTAAATCGAAAGAATTGGTTGATAAGTGTGtgcaaa
tgaaaaaatatctaaaGCATCTCTTTGAAGAACGTTTAAAATTTATTGTA
TGTTAAGTCAAAGGTTATTTTGATCAATAGGTACAGGGATTTATACGTAC
CCCCAAAATTCTCGAATAATAAATATTGTACGATTGAATACTAGTTCATT
AACCTATGGCTTTACTGATAATGGTCATCTAGTTAACTGTTAGTTTCTGG
GTTTGGTTTAACTATATTTTCTTCTCCTATGTTAGATAGTATAATAACAG
CTTTTCGTGTCTGAAGCCTTCTTCTGCAGCGTTTTCATTTTCGCTAGCAA
TTTTAACCTGCCGTATATTTTTTCCGGGGATAATGTTGATTTGTATCAAC
ATTTTTAGCCTAAACACAGATGATATTGGTAATTCTTACCCCCTGATTAG
TGTCCATGACTTTTATAGATTTTAACAAATGATTGACAACTGATTCCTCA
TCATTGAATTTTGAGTAATCCATtatatttctaaatttgtagtattttaa
aatatttcataagcGCTATGGGAGACCATCTTTTGAAATTAGACTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042759XLOC_042759Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068560-exon-scaffold_485-1491911889:111991..112738TCONS_00068560-exon-scaffold_485-1491911889:111991..112738Clytia hemisphaericaexon
TCONS_00068560-exon-scaffold_485-1510915933:111991..112738TCONS_00068560-exon-scaffold_485-1510915933:111991..112738Clytia hemisphaericaexon
TCONS_00068560-exon-scaffold_485-1575043694:111991..112738TCONS_00068560-exon-scaffold_485-1575043694:111991..112738Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_485supercontigscaffold_485:111991..112738 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.177078	0.0641862	0	0	0	0	0.0846238	0.0792238	0.110933	0	0	0	0	0.0909231	0.142754	0	0	0.0573167	0.151228	0.0840923	0.559353	0	0.184707	0.105003	0	0	0.338992	0.80586	0	0.127877
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068560 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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