TCONS_00068555 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068555
Unique NameTCONS_00068555
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length869

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068555 ID=TCONS_00068555|Name=TCONS_00068555|organism=Clytia hemisphaerica|type=transcript|length=869bp
CTAGGCCGTTGTCACAAACGACTTGTCACTCATTCATTACATCGAAGAAA
TTACATAAAACAATATATTAGAAACAATATGTTAAAAACATGACCCTGTT
ATGCTAGTTTCAATCACAAAGGATTTGCatcaaaaaagcttcaaaataaa
aaaggaattCCTTAACCATTGTGGTTAGTTATCGTGTGTAGATATTTGAT
TGTgactttgaaagattttgaaaatctttgaaaatcgtttgaaatattcg
TCGTAGAAATCTTACTGTAGTCTAATTTCAAAAGATGGCCTTCAATAGTG
CTTCTGAAATTTATTAAGATGCTACAAATTTAGAAAGATGATGGATTACT
CAAATTTCAATCTGGAGGAATCAGTTGTTAGTCGGTTGTTAAAATCTATA
AAAGTCATGGACACAAATCAGGGGGTAAGAATTACCAATAGAATCTGTTT
AGGTTAGAAATGTTGATGCAAATCAACATCATCCCCGGAAAAAATATACG
TCAGGttaaaatcgctagcgaaaatcaAAACGCTGCAGAAGAAGGCTTCA
GACACGAAAGGCTATTATTATACTATCTAACATAGGAGAACAAAATGTAG
TTAAACCAAACCCAGAAACTAACAGTTAACTAGATGGCCATTATCAGTAA
AGCCATAGGTTAATGAACTAGTATTCAATCTTACAATATTTATTATTCGA
GAATTTTCGGGGTACGTATAAATCCCTGTACCTATTAACCAAATAACCTT
TGACTTAACATACAATAAATTTTAAACGTTCTTCAAAGAgatgatttaga
tattttttcatttgcaCACACTTATCAACCAATTCTTTCGATTTATTTTT
GTCGTGTTCTCGGCGAAGC
Run BLAST on NCBI

transcript from alignment at scaffold_485:29769..30637

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068555 ID=TCONS_00068555|Name=TCONS_00068555|organism=Clytia hemisphaerica|type=transcript|length=869bp|location=Sequence derived from alignment at scaffold_485:29769..30637 (Clytia hemisphaerica)
GCTTCGCCGAGAACACGACAAAAATAAATCGAAAGAATTGGTTGATAAGT
GTGtgcaaatgaaaaaatatctaaatcatcTCTTTGAAGAACGTTTAAAA
TTTATTGTATGTTAAGTCAAAGGTTATTTGGTTAATAGGTACAGGGATTT
ATACGTACCCCGAAAATTCTCGAATAATAAATATTGTAAGATTGAATACT
AGTTCATTAACCTATGGCTTTACTGATAATGGCCATCTAGTTAACTGTTA
GTTTCTGGGTTTGGTTTAACTACATTTTGTTCTCCTATGTTAGATAGTAT
AATAATAGCCTTTCGTGTCTGAAGCCTTCTTCTGCAGCGTTTtgattttc
gctagcgattttaaCCTGACGTATATTTTTTCCGGGGATGATGTTGATTT
GCATCAACATTTCTAACCTAAACAGATTCTATTGGTAATTCTTACCCCCT
GATTTGTGTCCATGACTTTTATAGATTTTAACAACCGACTAACAACTGAT
TCCTCCAGATTGAAATTTGAGTAATCCATCATCTTTCTAAATTTGTAGCA
TCTTAATAAATTTCAGAAGCACTATTGAAGGCCATCTTTTGAAATTAGAC
TACAGTAAGATTTCTACGAcgaatatttcaaacgattttcaaagattttc
aaaatctttcaaagtcACAATCAAATATCTACACACGATAACTAACCACA
ATGGTTAAGGaattccttttttattttgaagcttttttgatGCAAATCCT
TTGTGATTGAAACTAGCATAACAGGGTCATGTTTTTAACATATTGTTTCT
AATATATTGTTTTATGTAATTTCTTCGATGTAATGAATGAGTGACAAGTC
GTTTGTGACAACGGCCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042754XLOC_042754Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068555-exon-scaffold_485-1491911889:29769..30637TCONS_00068555-exon-scaffold_485-1491911889:29769..30637Clytia hemisphaericaexon
TCONS_00068555-exon-scaffold_485-1510915933:29769..30637TCONS_00068555-exon-scaffold_485-1510915933:29769..30637Clytia hemisphaericaexon
TCONS_00068555-exon-scaffold_485-1575043694:29769..30637TCONS_00068555-exon-scaffold_485-1575043694:29769..30637Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_485supercontigscaffold_485:29769..30637 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0524188	0.0608632	0.0595451	0.0724905	0	0.207328	0.129399	0.226488	0.448867	0.326761	0.179	0.321752	0.185635	0.248289	0.0327563	0	0.0413606	0.171426	0.179385	0.217888	0.304205	0.246534	0.112068	0.403994	1.23619	0.451236	0.408003	0.376721	0.198499
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068555 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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