TCONS_00068548 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068548
Unique NameTCONS_00068548
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length968

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068548 ID=TCONS_00068548|Name=TCONS_00068548|organism=Clytia hemisphaerica|type=transcript|length=968bp
TTCTTTTTTTGCTCGAAGTATTTTGAAAGACAGACGtgtttgaaaatgga
aatgtTCTTCTTTGCTCTCATTTCAATCTCCTCATTCACTTTAGCAACGT
CATTACAGTGTTCAAAATGCGACAGTCGGACGTCATGGTCGGATTGTGTA
CGAACTGAACGTGTTGTTGAGTGCAGTCCTTCGGTGAAGACTGGAGACAG
AGATGTTAACATGACTTGCATCAAATCTGAAGTTTTTCATCGAGGGCATG
AAGGTGAAAGTTATATGGTTTACCAGAAGAAGTGTGGCACGAAGAACGAT
TGTAAGGAAGAAATGATTTGTAATGCTGATGGCTTTTGCAAGTTCTCATG
TTGCCAGGGTGATTGTTTAACCAAAGCTACTTCACAAGCAAATCAATTCA
CACCTTGTCACGTGGTATACTTTCTCGCTTCAATTTTCTCCGTATTCAAA
ATACTTGTTTGATTTGTCAGCCTGCAATTTTGTTTCAAGTGATAGAATTA
CGAGCGGCCCACGCTATAGATAACACGCTGTGAGATGATTGTGTTATAAT
TTGGTCTCTGCCAATTTGAAACGAATTGAATTTGCCTCATTTGTTTAGGT
GAGGGGTATTAATAAGAATATTTGAGAGTCTTTCATTAGGCGCTATTTGG
AGTTATTTGATTAATATTCTGACTTTGAACGTTGTCTAAATCGCAAGGAA
AATTCTGGCGAAAATATGATTGTGAAATCCGAAACCGATAATCCTTTGAA
AACCAATTAAATatatggacatgtttttttttgactgtaccaaaatgccg
attttcaaccaacccggttcaaatctgcactaacagagacagctgaaccc
tttcttagcgttattcaaaaataagaaaatagattagtagctctatccga
tactttttgtccgatcttaatagcttttatggaacttaagatatcgcttg
ttgaatctggagtatttc
Run BLAST on NCBI

transcript from alignment at scaffold_485:509320..512389-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068548 ID=TCONS_00068548|Name=TCONS_00068548|organism=Clytia hemisphaerica|type=transcript|length=3070bp|location=Sequence derived from alignment at scaffold_485:509320..512389- (Clytia hemisphaerica)
TTCTTTTTTTGCTCGAAGTATTTTGAAAGACAGACGTGTTTGAAAATGGA
AATGTTCTTCTTTGCTCTCATTTCAATCTCCTCATTCACTTTAGGTAAGA
CAATCAAATAAGAGGGGGCTTATTTGTAAGACTGATGTTGGTTTACTTGT
CATTTGATTTGAAAGTTACAATTGTAGCTTTTTTGTAGCTGGTTTGATTT
GACCCTGTGCTACACGCTTTTTTTTATAAGAATACACTTTATAAGAATGT
CCATGATGAAAATGGCCAAAAAATTAAGAATATGGTAAGAATATCACCAT
CATGGAATTTAGCAACTGAACCTAAGAATGCCATTTTAAAGGCATTTTAA
CCTGTAGATTGCCAATATCGATCTTAACCTAAGAGTACCGTAAGAATACT
TTTGGATGATTTTTGCCAAAAAGTTAAGAATATCCATGATGAAATGAAAA
AAACACCGTTCTTATAAAAAAAAGCGTGTATTCATCTGCTTTGGTTCATA
ATAGTGATAGAAATAGGATACAAATTTATTTTGTTTTTCATGACAGAGGA
ATTTGAATATAAAAGATAATGAGTTTTAGAAACCGTTCCCCAGTGCAATT
CCATTCTTCGTTTCATCCACGTGAGCCATTTGCTTGCTTTTACAAAACGG
GGTTTTAAATTTTTACTAAAAGAAATACTTATATAACAACATATTACATA
CAATTTTCATTAAACAAGAGTAGAGTTAATTTTTTTCTATTTGCTTTTCT
TATTTCAATACATTTCTGCAAAGGCTAGATAAATTTACTTAAATTTAGGT
CTCCGGATCAAATAGATCTACAACAAGGTCTTAAAGATCTTAATCCTTAC
AACTACAGTATTTGCTTGTATACATCAAATCAGACTAATCAAAAGTTCAT
GTCTTTCCGTCTTTTTAACAGCAACGTCATTACAGTGTTCAAAATGCGAC
AGTCGGACGTCATGGTCGGATTGTGTACGAACTGAACGTGTTGTTGAGTG
CAGTCCTTCGGTGAAGACTGGAGACAGAGATGTTAACATGACTTGCATCA
AATCTGAAGTTTTTCATCGAGGGCATGAAGGTGAAAGTTATATGGTTTAC
CAGAAGAAGTGTGGCACGAAGAACGATTGTAAGGAAGAAATGATTTGTAA
TGCTGATGGCTTTTGCAAGGTAATTATACTGATATTTCTTTAACTGGTTC
TAAATGTCATTAAAATCCACTCGGTTTATTTATTTCACATGAAATTATTC
CATCTCCTCTAGAAGGCTGAAATCAGGAGTCTTTATATACCAAATATGAA
GTTTCTAGCATCAAAGAAATGATAGATCATTGTTTTTTCTTTTTTCATTC
TTCATTTTTCATTTTCATTTTCGAAAAGTTTGAAATTATTCTTCTCAAAA
ATTAAAGTGTTATGGATTAGGCTTTTCCAGAAATAGTCCAGTGTCCCCCT
GTTGAGGACATCGGATATCCAGGGGCTTAAAGATTCTTGTTCAAAAGGTG
ATATCCAGGGGGTAAAGTGTCTTTTCAAGTAAAAAATACGATATCCAGGG
GTAAGCATCTTTATAAGAGAGGATGTTCAGGGGGTTCGATACTTCGAAAA
ATCAATATCCTCAACAGTAAGGAGTAAAATCTTTTTTTGGAAAAGCCCAT
TATATTTCCGACAGAAAAATCTGATTTGTTACAACTAAAACATTCCATGA
AAATGGCAAAAAAAAACAAGGTTATTGCACACTCAAAACGAAATGACTTG
AATTCTGAACCGGTAATTCACGATTTAAAAAAGTGATATAATCGATCTTT
AAAGTGTGGATAAGTACCTGGAAACCCTTCAAAATAGTTAACATTCCTTG
TAGGATAACTAGGAAAACTGTAGACATTTCAACTACGAAATTATGACATT
GTGCAAATACTATAGACTACAAAAACCCAAGTATTCTGAGAAGTAAAGGT
CTTACGTTTCTTGGTCTAAGTAAAACTTTCCTATCGCGGAAATGCCAAAG
ATTGGATGGAATACTTAAGTTAAGTGATTTGTTACTAACTACAATCAATG
ACAAAATACTTGGTACAAAAGGGAAATTCACCGTCGTGTTTTGAAACCAC
AATTGTAAGTGCTCTAAAGTAGGTTCGAAGGGTAGAGTTTTAACGCTAGA
CTTAAGACTTACAACCTTAGGATCTGAGGATCCAAAAGTTCAAAAATGGT
CCAGTAGGGCTTGAAATATAGCCTACAAACCAATAAATCCCTCCCAGATC
GAAATAATCGATGAAATAAAGTTGAAGGCCTAAAAATTGACATTCTCGCT
CGAACTTCAATTTTCGAAAAATGGTAAATTAGCCAAAAGTGCCAATATAT
TATGACACTGATTGTATAAGTAATACAAGTAAAATTTTACTTATACTTTT
TGCAGTGTAGACTAACAAACTGTTCGTTTTCTTTTCTGTTTCAGTTCTCA
TGTTGCCAGGGTGATTGTTTAACCAAAGCTACTTCACAAGCAAATCAATT
CACACCTTGTCACGTGGTATACTTTCTCGCTTCAATTTTCTCCGTATTCA
AAATACTTGTTTGATTTGTCAGCCTGCAATTTTGTTTCAAGTGATAGAAT
TACGAGCGGCCCACGCTATAGATAACACGCTGTGAGATGATTGTGTTATA
ATTTGGTCTCTGCCAATTTGAAACGAATTGAATTTGCCTCATTTGTTTAG
GTGAGGGGTATTAATAAGAATATTTGAGAGTCTTTCATTAGGCGCTATTT
GGAGTTATTTGATTAATATTCTGACTTTGAACGTTGTCTAAATCGCAAGG
AAAATTCTGGCGAAAATATGATTGTGAAATCCGAAACCGATAATCCTTTG
AAAACCAATTAAATATATGGACATGTTTTTTTTTGACTGTACCAAAATGC
CGATTTTCAACCAACCCGGTTCAAATCTGCACTAACAGAGACAGCTGAAC
CCTTTCTTAGCGTTATTCAAAAATAAGAAAATAGATTAGTAGCTCTATCC
GATACTTTTTGTCCGATCTTAATAGCTTTTATGGAACTTAAGATATCGCT
TGTTGAATCTGGAGTATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042748XLOC_042748Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068548-exon-scaffold_485-1575043694:512296..512389TCONS_00068548-exon-scaffold_485-1575043694:512296..512389Clytia hemisphaericaexon
TCONS_00068548-exon-scaffold_485-1575043694:511221..511468TCONS_00068548-exon-scaffold_485-1575043694:511221..511468Clytia hemisphaericaexon
TCONS_00068548-exon-scaffold_485-1575043694:509320..509945TCONS_00068548-exon-scaffold_485-1575043694:509320..509945Clytia hemisphaericaexon
TCONS_00068548-exon-scaffold_485-1510915933:512296..512389TCONS_00068548-exon-scaffold_485-1510915933:512296..512389Clytia hemisphaericaexon
TCONS_00068548-exon-scaffold_485-1510915933:511221..511468TCONS_00068548-exon-scaffold_485-1510915933:511221..511468Clytia hemisphaericaexon
TCONS_00068548-exon-scaffold_485-1510915933:509320..509945TCONS_00068548-exon-scaffold_485-1510915933:509320..509945Clytia hemisphaericaexon
TCONS_00068548-exon-scaffold_485-1491911889:512296..512389TCONS_00068548-exon-scaffold_485-1491911889:512296..512389Clytia hemisphaericaexon
TCONS_00068548-exon-scaffold_485-1491911889:511221..511468TCONS_00068548-exon-scaffold_485-1491911889:511221..511468Clytia hemisphaericaexon
TCONS_00068548-exon-scaffold_485-1491911889:509320..509945TCONS_00068548-exon-scaffold_485-1491911889:509320..509945Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_485supercontigscaffold_485:509320..512389 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.415954	0.126617	0.00622123	0.0953161	0.69631	2.66927	0.932291	2.05132	1.35458	6.1539	5.71952	7.15162	5.85482	3.30694	2.46857	0.614794	0.810384	7.44832	6.38918	1.24114	3.63907	2.05298	2.38659	1.47447	0	0	0.253895
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068548 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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