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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068546 ID=TCONS_00068546|Name=TCONS_00068546|organism=Clytia hemisphaerica|type=transcript|length=2008bp
CCTTTTTCTACTTGAGGTTTAGTAGGGCCCGTTGACTTTATTGTAGTTCG
AAGAGGTATGTTAGTGGTATCAGACGAATCTGTTGTAGATTTTGACCAAT
TATGAGGCATGGTTGTAGTATCAGTCGAATCTGTTGTAGATTTTGACCAA
TTATGCGGCATGGTTGTGGTATCAGTCGAATCTGTTGTAGATTTTGACCA
ATTATGCGGCATGGTTGTGGTATCAGTCGAATCTGTTGTAGATTTTGACC
AATTATGAGGCATGGTTGTGGTATCAGTCGAATCTGTTGTAGATTTCGAC
CAATTATCAGACATGGTTGTTGCTTCACTCGTAGTTTCAGTAGatgatac
agttgtagaatcagttgtagacgagtcagtagttAATTCAGTTGTGGTAc
cacttgttgtttcagtagaggatacagttgtagaatcagtagtgGATTCA
GTAGAAGCATCACTGgtagttgtagaatcagttgtagTCGAGTCAGTAGT
TAAttcagttgttgcttcacttgttgtttcagtagttgatacagttgtag
aatcagtagttGATTCTGTAGTATTCGAACCACCGTTGCCATTGTTTGGA
TCGTCTGTTGTTGTTGACGAGTCAGTAGTTGCTTtacttgttgtttcagt
agtTGAttcagttgtagaatcagtagaAGCATCACTGGTAGTTTCAGTGG
AAGACTCAGTGGTGGAttcagttgttgcttcacttgtagttccagtagac
gatccagttgtagaatcagttgtagacgagtcagtagttAATTCAGTAGT
TGCTTCACTTGTAGTTccagtagacgatacagttgaagaatcagttgtag
acgagtcagtagttGATTCAGTTGTGGTAccacttgttgtttcagtagag
gatacagttgtagaatcagtagttGATTCTGTATTATTCGAACCACCGTT
GCCATTGTTTGGATCATCTGTTGTTGTTGACGAGTCAGTAGTTGCTTCAC
TTGTTGTTACAGTTATAGAATCAGTAGTGGATTCAGTAGAAGCATCACTG
GTAGTTTCAGTGGAAGACTCAGTGGTGGATTCAGTTTTTGCTTCACTTGT
AGTTccagtagacgatacagttgtagaatcagttgtagacgagtcagtag
ttATTTCAGTAGTTGCTTCACTTGTTGTTTCAGTAGAGGATTCAGTTGTA
GAATCAGTAGTGGATTCAGTAGAAGGATCACTTGTAGTTTTAGTGGAAGA
CTCAGTGGTGGAttcagttgttgcttcacttgtagttccagtagacgata
cagttgtagaatcagttgtagacgagtcagtagttATTTCAGTAGTTgct
tcacttgttgtttcagtagaggattcagttgtagaatcagtagtgGATTC
AGTAGAAGGATCACTTGTAGTTTTAGTGGAAGACTCAGTGGTGGAttcag
ttgttgcttcacttgtagttccagtagacgatacagttgtagaatcagtt
gtagacgagtcagtagttaattcagttgtggtatcacttgttgtttcagt
agacGATACAGTTGTAAAATCAGTAGTAGAAGCATCACTGGTAGTTTCAG
TGGAAGACTCAGTTGTGGAttcagttgttgcttcacttgtagtttcagta
gacgatacagttgtagaatcagttgtagTCGAGTCAGTAGTTAATTCAGT
AGTTGCTTCACTTGTTGTTTGAGTAGTTGAttcagttgtagaatcagtag
cGGACTCAGTAGAAGCATCTCTGGTAGTTTCAGTGGAAGACTCAGTGGTG
GATTCAGTTGTTGCTTCGCTTGTAGATCCAGTAGACGAtccagttgtaga
atcagttgtagTCGAGTGAGTAGTTAATTCAGTAGTTgcttcacttgttg
tttcagtagtTGAttcagttgtagaatcagtagttGATTCTGTAGTATTC
GAACCACCGTTGCCATTGTTTGGATCGTCTGTTGTTGTTGACGAGTCAGT
AGTTGCTT Run BLAST on NCBI transcript from alignment at scaffold_485:503649..505962- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068546 ID=TCONS_00068546|Name=TCONS_00068546|organism=Clytia hemisphaerica|type=transcript|length=2314bp|location=Sequence derived from alignment at scaffold_485:503649..505962- (Clytia hemisphaerica)
CCTTTTTCTACTTGAGGTTTAGTAGGGCCCGTTGACTTTATTGTAGTTCG
AAGAGGTATGTTAGTGGTATCAGACGAATCTGTTGTAGATTTTGACCAAT
TATGAGGCATGGTAGTGGTATCAGACGAATCTGTTGTAGATTTTGACCAA
TTATGAGGCATGGTTGTGGTATCAGACGAATCTGTTGTAGATTTTGACCA
ATTATGAGACATGGTAGTGGTATCAGACGAATCTGTTGTAGATTTTGACC
AATTATGAGGCATGGTTGTGGTATCAGTCGAATCTGTTGTAGATTTTGAC
CAATTATGAGACATGGTTGTGGTATCAGACGAATCTGTTGTAGATTTCGA
CCAATTATGAGGCATGGTTGTAGTATCAGTCGAATCTGTTGTAGATTTTG
ACCAATTATGCGGCATGGTTGTGGTATCAGTCGAATCTGTTGTAGATTTT
GACCAATTATGAGGCATGGTTGTGGTATCAGTCGAATCTGTTGTAGATTT
TGACCAATTATGCGGCATGGTTGTGGTATCAGTCGAATCTGTTGTAGATT
TTGACCAATTATGAGGCATGGTTGTGGTATCAGTCGAATCTGTTGTAGAT
TTCGACCAATTATCAGACATGGTTGTTGCTTCACTCGTAGTTTCAGTAGA
TGATACAGTTGTAGAATCAGTTGTAGACGAGTCAGTAGTTAATTCAGTTG
TGGTACCACTTGTTGTTTCAGTAGAGGATACAGTTGTAGAATCAGTAGTG
GATTCAGTAGAAGCATCACTGGTAGTTGTAGAATCAGTTGTAGTCGAGTC
AGTAGTTAATTCAGTTGTTGCTTCACTTGTTGTTTCAGTAGTTGATACAG
TTGTAGAATCAGTAGTTGATTCTGTAGTATTCGAACCACCGTTGCCATTG
TTTGGATCGTCTGTTGTTGTTGACGAGTCAGTAGTTGCTTTACTTGTTGT
TTCAGTAGTTGATTCAGTTGTAGAATCAGTAGAAGCATCACTGGTAGTTT
CAGTGGAAGACTCAGTGGTGGATTCAGTTGTTGCTTCACTTGTAGTTCCA
GTAGACGATCCAGTTGTAGAATCAGTTGTAGACGAGTCAGTAGTTAATTC
AGTAGTTGCTTCACTTGTAGTTCCAGTAGACGATACAGTTGAAGAATCAG
TTGTAGACGAGTCAGTAGTTGATTCAGTTGTGGTACCACTTGTTGTTTCA
GTAGAGGATACAGTTGTAGAATCAGTAGTTGATTCTGTATTATTCGAACC
ACCGTTGCCATTGTTTGGATCATCTGTTGTTGTTGACGAGTCAGTAGTTG
CTTCACTTGTTGTTACAGTTATAGAATCAGTAGTGGATTCAGTAGAAGCA
TCACTGGTAGTTTCAGTGGAAGACTCAGTGGTGGATTCAGTTTTTGCTTC
ACTTGTAGTTCCAGTAGACGATACAGTTGTAGAATCAGTTGTAGACGAGT
CAGTAGTTATTTCAGTAGTTGCTTCACTTGTTGTTTCAGTAGAGGATTCA
GTTGTAGAATCAGTAGTGGATTCAGTAGAAGGATCACTTGTAGTTTTAGT
GGAAGACTCAGTGGTGGATTCAGTTGTTGCTTCACTTGTAGTTCCAGTAG
ACGATACAGTTGTAGAATCAGTTGTAGACGAGTCAGTAGTTATTTCAGTA
GTTGCTTCACTTGTTGTTTCAGTAGAGGATTCAGTTGTAGAATCAGTAGT
GGATTCAGTAGAAGGATCACTTGTAGTTTTAGTGGAAGACTCAGTGGTGG
ATTCAGTTGTTGCTTCACTTGTAGTTCCAGTAGACGATACAGTTGTAGAA
TCAGTTGTAGACGAGTCAGTAGTTAATTCAGTTGTGGTATCACTTGTTGT
TTCAGTAGACGATACAGTTGTAAAATCAGTAGTAGAAGCATCACTGGTAG
TTTCAGTGGAAGACTCAGTTGTGGATTCAGTTGTTGCTTCACTTGTAGTT
TCAGTAGACGATACAGTTGTAGAATCAGTTGTAGTCGAGTCAGTAGTTAA
TTCAGTAGTTGCTTCACTTGTTGTTTGAGTAGTTGATTCAGTTGTAGAAT
CAGTAGCGGACTCAGTAGAAGCATCTCTGGTAGTTTCAGTGGAAGACTCA
GTGGTGGATTCAGTTGTTGCTTCGCTTGTAGATCCAGTAGACGATCCAGT
TGTAGAATCAGTTGTAGTCGAGTGAGTAGTTAATTCAGTAGTTGCTTCAC
TTGTTGTTTCAGTAGTTGATTCAGTTGTAGAATCAGTAGTTGATTCTGTA
GTATTCGAACCACCGTTGCCATTGTTTGGATCGTCTGTTGTTGTTGACGA
GTCAGTAGTTGCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068546-exon-scaffold_485-1575043694:505857..505962 | TCONS_00068546-exon-scaffold_485-1575043694:505857..505962 | Clytia hemisphaerica | exon |
| TCONS_00068546-exon-scaffold_485-1575043694:505551..505601 | TCONS_00068546-exon-scaffold_485-1575043694:505551..505601 | Clytia hemisphaerica | exon |
| TCONS_00068546-exon-scaffold_485-1575043694:503649..505499 | TCONS_00068546-exon-scaffold_485-1575043694:503649..505499 | Clytia hemisphaerica | exon |
| TCONS_00068546-exon-scaffold_485-1510915933:505857..505962 | TCONS_00068546-exon-scaffold_485-1510915933:505857..505962 | Clytia hemisphaerica | exon |
| TCONS_00068546-exon-scaffold_485-1510915933:505551..505601 | TCONS_00068546-exon-scaffold_485-1510915933:505551..505601 | Clytia hemisphaerica | exon |
| TCONS_00068546-exon-scaffold_485-1510915933:503649..505499 | TCONS_00068546-exon-scaffold_485-1510915933:503649..505499 | Clytia hemisphaerica | exon |
| TCONS_00068546-exon-scaffold_485-1491911889:505857..505962 | TCONS_00068546-exon-scaffold_485-1491911889:505857..505962 | Clytia hemisphaerica | exon |
| TCONS_00068546-exon-scaffold_485-1491911889:505551..505601 | TCONS_00068546-exon-scaffold_485-1491911889:505551..505601 | Clytia hemisphaerica | exon |
| TCONS_00068546-exon-scaffold_485-1491911889:503649..505499 | TCONS_00068546-exon-scaffold_485-1491911889:503649..505499 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_485 | supercontig | scaffold_485:503649..505962 - |
Blast
The following BLAST results are available for this feature:
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