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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068545 ID=TCONS_00068545|Name=TCONS_00068545|organism=Clytia hemisphaerica|type=transcript|length=2083bpRun BLAST on NCBI protein sequence of TCONS_00068545-protein >TCONS_00068545-protein ID=TCONS_00068545-protein|Name=TCONS_00068545-protein|organism=Clytia hemisphaerica|type=polypeptide|length=282bp MDNVLIVRYGGRTNQNLRLFLAELMGTFILMMFGIGSVAALVLGKGAVGTRun BLAST on NCBI transcript from alignment at scaffold_485:457466..555228- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068545 ID=TCONS_00068545|Name=TCONS_00068545|organism=Clytia hemisphaerica|type=transcript|length=97763bp|location=Sequence derived from alignment at scaffold_485:457466..555228- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_485:457466..555228- >TCONS_00068545 ID=TCONS_00068545|Name=TCONS_00068545|organism=Clytia hemisphaerica|type=CDS|length=5094bp|location=Sequence derived from alignment at scaffold_485:457466..555228- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00068545 vs. Swiss-Prot (Human)
Match: AQP9 (Aquaporin-9 OS=Homo sapiens GN=AQP9 PE=2 SV=2) HSP 1 Score: 201.83 bits (512), Expect = 1.869e-58 Identity = 121/268 (45.15%), Postives = 170/268 (63.43%), Query Frame = 3
Query: 795 LAELMGTFILMMFGIGSVAALVLGKGAVGTFLSVNFGWGIGCALGVYWSAGISGGHINPAVTLAMCVCGRLPWKQLPVYWAAQFLGSFIASALCFAIYKDLIYAYETQLTL-----KTAGIFSTYPFANVSHGTAFGDQVVGTMLLVGTVCALTDKRNSPPSGGTLPXXXXXXXXXXXXXXXXNCGYGINPARDLIPRIFTAIAGWGSEPFTTADHWFWIPIVGQFXXXXXXXXXXXXTIEMHHPNQHKP-SLLKSESVPTDYEKSAV 1580
L+E +GTFIL++ G G VA +L +G G +++N G+ + A+ +Y + G+SGGHINPAV+LAMC+ GR+ W +LP Y AQFLG+F+ +A F IY D + ++ L TA IF+TYP +S AF DQVV TM+L+ V A+ D RN G P+ +GL++ VI S G+N G +NPARDL PR+FTA+AGWG E F ++++WIP+VG +G IG L+Y+L IE+HHP +SE P YE S +
Sbjct: 27 LSEFLGTFILIVLGCGCVAQAILSRGRFGGVITINVGFSMAVAMAIYVAGGVSGGHINPAVSLAMCLFGRMKWFKLPFYVGAQFLGAFVGAATVFGIYYDGLMSFAGGKLLIVGENATAHIFATYPAPYLSLANAFADQVVATMILLIIVFAIFDSRNLGAPRGLEPIAIGLLIIVIASSLGLNSGCAMNPARDLSPRLFTALAGWGFEVFRAGNNFWWIPVVGPLVGAVIGGLIYVLVIEIHHPEPDSVFKTEQSEDKPEKYELSVI 294 The following BLAST results are available for this feature:
BLAST of TCONS_00068545 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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