TCONS_00068538 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068538
Unique NameTCONS_00068538
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length433

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068538 ID=TCONS_00068538|Name=TCONS_00068538|organism=Clytia hemisphaerica|type=transcript|length=433bp
AATTGACTTTGCTTTGTCAAAGTCAGATAATTCTTCAAATGTCGTCTTGA
TTCTTGAAGGAGGCTCTTCATTATCCCCAGATCTACGATATGAGACAGGG
TTGTTCCCATTCTTTCCTCATGATATTGAGAgcatcaaaatcagaaaaaa
atcagcGATGCAGAAGAACCCGACAATAGTTTCTACGAACTCACCAGCAA
AATATTTGAGATCAAATCTTAAGAAGATACGTATCGATTCTGTGGATCTA
TTTGACTTACAACTAACGGGTTTACAAGAGGGAAAACAACCTATCAACAT
TGAAATCACCAACTGCAACATACAGCTTCCAAAGGATTCagattttttaa
atgttgttgACACAACAACGTCAATAATAATTCAAAATAGTCATCTAATT
GGTTCAAATAACAGCTTTATAAGACTATCTAAT
Run BLAST on NCBI

protein sequence of TCONS_00068538-protein

>TCONS_00068538-protein ID=TCONS_00068538-protein|Name=TCONS_00068538-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
IDFALSKSDNSSNVVLILEGGSSLSPDLRYETGLFPFFPHDIESIKIRKK
SAMQKNPTIVSTNSPAKYLRSNLKKIRIDSVDLFDLQLTGLQEGKQPINI
EITNCNIQLPKDSDFLNVVDTTTSIIIQNSHLIGSNNSFIRLSN
Run BLAST on NCBI

transcript from alignment at scaffold_485:331632..332374-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068538 ID=TCONS_00068538|Name=TCONS_00068538|organism=Clytia hemisphaerica|type=transcript|length=743bp|location=Sequence derived from alignment at scaffold_485:331632..332374- (Clytia hemisphaerica)
AATTGACTTTGCTTTGTCAAAGTCAGATAATTCTTCAAATGTCGTCTTGA
TTCTTGAAGGAGGCTCTTCATTATCCCCAGGTCTGTATGTCATTATAATC
CACTTTTATTGATATACAGTAGGGATCTAATTCACATCAAAAGAGTCTTT
GTTTGACGATTTAGATTTGAGACTATTGTCTAGAATCGCTGGGAGACGTT
TGTAATTTATCCCAAAATTCTTATGTTTGAAGATCTACACGCTTTTCTTA
TAAGAATAGTGTACTTTGGCTGAGAGTGAGCATCATTCTTGTTTTTCTAT
TGCTCTAACTCGGAAATCACACCCTAATATTCTTATAGAGGTTATTCTTA
TAAAAAAGCGTGTATTTACAGTAGATTTTTCTTTCAATAGATCTACGATA
TGAGACAGGGTTGTTCCCATTCTTTCCTCATGATATTGAGAGCATCAAAA
TCAGAAAAAAATCAGCGATGCAGAAGAACCCGACAATAGTTTCTACGAAC
TCACCAGCAAAATATTTGAGATCAAATCTTAAGAAGATACGTATCGATTC
TGTGGATCTATTTGACTTACAACTAACGGGTTTACAAGAGGGAAAACAAC
CTATCAACATTGAAATCACCAACTGCAACATACAGCTTCCAAAGGATTCA
GATTTTTTAAATGTTGTTGACACAACAACGTCAATAATAATTCAAAATAG
TCATCTAATTGGTTCAAATAACAGCTTTATAAGACTATCTAAT

Coding sequence (CDS) from alignment at scaffold_485:331632..332374-

>TCONS_00068538 ID=TCONS_00068538|Name=TCONS_00068538|organism=Clytia hemisphaerica|type=CDS|length=864bp|location=Sequence derived from alignment at scaffold_485:331632..332374- (Clytia hemisphaerica)
ATCTACGATATGAGACAGGGTTGTTCCCATTCTTTCCTCATGATATTGAG
AGCATCAAAATCAGAAAAAAATCAGCGATGCAGAAGAACCCGACAATAGT
TTCTACGAACTCACCAGCAAAATATTTGAGATCAAATCTTAAGAAGATAC
GTATCGATTCTGTGGATCTATTTGACTTACAACTAACGGGTTTACAAGAG
GGAAAACAACCTATCAACATTGAAATCACCAACTGCAACATACAGCTTCC
AAAGGATTCAGATTTTTTAAATGTTGTTGACACAACAACGTCAATAATAA
TTCAAAATAGTCATCTAATTGGTTCAAATAACAGCTTTATAAGACTATCT
AATATTGACTTTGCTTTGTCAAAGTCAGATAATTCTTCAAATGTCGTCTT
GATTCTTGAAGGAGGCTCTTCATTATCCCCAGATCTACGATATGAGACAG
GGTTGTTCCCATTCTTTCCTCATGATATTGAGAGCATCAAAATCAGAAAA
AAATCAGCGATGCAGAAGAACCCGACAATAGTTTCTACGAACTCACCAGC
AAAATATTTGAGATCAAATCTTAAGAAGATACGTATCGATTCTGTGGATC
TATTTGACTTACAACTAACGGGTTTACAAGAGGGAAAACAACCTATCAAC
ATTGAAATCACCAACTGCAACATACAGCTTCCAAAGGATTCAGATTTTTT
AAATGTTGTTGACACAACAACGTCAATAATAATTCAAAATAGTCATCTAA
TTGGTTCAAATAACAGCTTTATAAGACTATCTAATATTGACTTTGCTTTG
TCAAAGTCAGATAATTCTTCAAATGTCGTCTTGATTCTTGAAGGAGGCTC
TTCATTATCCCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042744XLOC_042744Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068538-proteinTCONS_00068538-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068538-exon-scaffold_485-1575043694:332295..332374TCONS_00068538-exon-scaffold_485-1575043694:332295..332374Clytia hemisphaericaexon
TCONS_00068538-exon-scaffold_485-1575043694:331632..331984TCONS_00068538-exon-scaffold_485-1575043694:331632..331984Clytia hemisphaericaexon
TCONS_00068538-exon-scaffold_485-1510915933:332295..332374TCONS_00068538-exon-scaffold_485-1510915933:332295..332374Clytia hemisphaericaexon
TCONS_00068538-exon-scaffold_485-1510915933:331632..331984TCONS_00068538-exon-scaffold_485-1510915933:331632..331984Clytia hemisphaericaexon
TCONS_00068538-exon-scaffold_485-1491911889:332295..332374TCONS_00068538-exon-scaffold_485-1491911889:332295..332374Clytia hemisphaericaexon
TCONS_00068538-exon-scaffold_485-1491911889:331632..331984TCONS_00068538-exon-scaffold_485-1491911889:331632..331984Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_485supercontigscaffold_485:331632..332374 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.16878	0.610878	0.571897	0.400398	1.48787	1.60463	0.949338	1.05335	0.656351	0	0	0.475589	0.121866	0.168364	1.58563	0	0	0	0	0.680194	0.151764	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068538 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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