TCONS_00068530 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068530
Unique NameTCONS_00068530
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length557

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068530 ID=TCONS_00068530|Name=TCONS_00068530|organism=Clytia hemisphaerica|type=transcript|length=557bp
ATTCTAGTAGattagagaaaaaaacaaaatgaagcttcaTCTAATATTGA
TGCAATGTATTATTATGGTCATTGCCACAGACATCAACATCATTGATTTA
ACACATGAATTTGAAAATGGTACATCCCCCTATTGGAAAatggaaaattc
ttttcatttcaCCTCCAGTTTTTCTGGTCAAACAGCAAATTACTTCTACA
GCAGTAACTCTTTTTGTGCATCAGAACATGGTGGTACCCATTTGGACGCA
CCAATTCATTTCGCCAAAGGGAAACATACAGCTGGTGAAATCTCCTTAAA
GAATTTGATTGCCACACCTTTCATTGTGGATGTATCGAGTCATGTGAACA
ATGATCCAGATTTCCAAGTTGATGAGCAACATTTAATGGAAgcagaaaag
aaaaatgggaAGATTCCGGATGGGGCAATACTACTATTATATACTgGTTT
GAGTTTGAAATATGACGATTTATCAGCTTATTTTGGAGGCGATCCACAAA
ATTCTTCAACTTATCATTTTCCTGGTTTGCACCCAAATGGCGCTCAGTGG
ATTGTTG
Run BLAST on NCBI

transcript from alignment at scaffold_485:157838..159823-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068530 ID=TCONS_00068530|Name=TCONS_00068530|organism=Clytia hemisphaerica|type=transcript|length=1986bp|location=Sequence derived from alignment at scaffold_485:157838..159823- (Clytia hemisphaerica)
ATTCTAGTAGATTAGAGAAAAAAACAAAATGAAGCTTCATCTAATATTGA
TGCAATGTATTATTATGGTCATTGCCACAGACATCAACATCATTGATTTA
ACACATGAATTTGAAAATGGTACATCCCCCTATTGGAAAATGGAAAATTC
TTTTCATTTCACCTCCAGTTTTTCTGGTCAAACAGCAAATTACTTCTACA
GCAGTAACTCTTTTTGTGCATCAGAACATGGTGGTACCCATTTGGACGCA
CCAATTCATTTCGCCAAAGGGAAACATACAGCTGGTGAAATCTCCTTAAA
GAATTTGATTGCCACACCTTTCATTGTGGATGTATCGAGTCATGTGAACA
ATGATCCAGATTTCCAAGTTGATGAGCAACATTTAATGGAAGCAGAAAAG
AAAAATGGGAAGATTCCGGATGGGGCAATACTACTATTATATACTGGTGA
ATTTTCAATTTTTGGGACCTCGGACAGCCTTGGTCTTCTCTTTTCATTAG
TTTCAATCGCATAAACAGTGATCTGTATTAATTTGCAGAGTCCAAAGACT
CTCTCACATTTCAACATCTTTGGCTATTCTTTCTATTTCGTGTTTCTTTG
GAAGAACAGTTATGGTTATTTGCTTCTACAATGACAATTTTCCCGTTTCA
GGTTTGAGTTTGAAATATGACGATTTATCAGCTTATTTTGGAGGCGAACC
ACAAAATTCTTCAACTTATCATTTTCCTGGTTTGCACCCAAATGGCGCCC
GATGGATTGTTGACAATCGAAATGTAGGGAAATAATTTTTTTATTGCTTT
AGGTTAAATTTCAGGCTGATGGAGGATATTTTTCAATTTTACTCTCTTAC
TCAGTATTTTGTAGTCTAAATATAACTTGCAAACCTTTTCAAACTCTTTG
TCCTTTTACATCCACATGAGCATGATTCGATGGTTTTTTCTGTAATTATT
TCGATCAGTAAAGTTGTTGTTTCTACTTTCACTAGGTGAGCGCAGTAGGC
ATCGACACTCCATCTCTGGATTTCGGACAAAGTACACTCTTCCAATCTCA
TGTCATTCTATTCACTCATAATATACCAGGATTCGAAAATGTTGATCTCA
CTCAGATCGAAAAAATACAATCAATGAAAAATCCATTAATTATCGCGCTC
CCGATGAAAATTAAAAATGGTTCAGGAGGACCGTTAAGAATTGTTGCCAT
GGAAACTCCGACAGCTCCTTCGGCTTCCATGAGAAACGTCATTTCATTGT
TCATGGTTTTAGCATGTTTCAGCTTTGCTGGGCAGTTTGTCGTTTGAGAC
TGATATATTGAGAATTGAATTGCAGGCCTTCTTTAATTGCTGATGAAAAT
GATAAACTAACTTTTTTTTATTATGTCCGGGATTTTATTTATCAACACGA
CTTGACTCAATTTCTTTACCGATTTTTGTAGAATTTTTGTAAATAATCAA
TTTTTAGACTCGTATATTTTATATCTCACAAAATTTGTTAAAAATTTAAT
ACTTGGAGCAAGAAACGATATTTTCGCTTAAATGACCAATTCTCATAATT
TTTTACGGATGGGGTTTTATGACTTAATCGTGAAAATGAGAAAAAACAGC
TAAGACCCTCTCAAATAATCTTTATCTTTCAGAACTTTTAAACAGGATCT
AAATATCTCTAATGTCCGATTTTATCAAGCATTTTGGGCTTTTCTGACAG
GTGAATTACGTAATCATTTTTCTTCCTCGTAGTTTGGTTCATTATGGAAA
CGTACCTTTCTAGATAAAATAATATCATACGCGGTAGAAAAGACACTCCT
TCCTCCTAATGGAGCCCAATGGGCTAATATGGCTAAGGAGGGTTGCATAT
TTTTTAAATGAATTTTCTTTTGCAGATATGAGTGTCCAATATGACGATTT
GTTAGCTTATTTTGGAGGCGATCCACAAAATTCTTCAACTTATCATTTTC
CTGGTTTGCACCCAAATGGCGCTCAGTGGATTGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042739XLOC_042739Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068530-exon-scaffold_485-1575043694:159378..159823TCONS_00068530-exon-scaffold_485-1575043694:159378..159823Clytia hemisphaericaexon
TCONS_00068530-exon-scaffold_485-1575043694:159131..159172TCONS_00068530-exon-scaffold_485-1575043694:159131..159172Clytia hemisphaericaexon
TCONS_00068530-exon-scaffold_485-1575043694:157838..157906TCONS_00068530-exon-scaffold_485-1575043694:157838..157906Clytia hemisphaericaexon
TCONS_00068530-exon-scaffold_485-1510915933:159378..159823TCONS_00068530-exon-scaffold_485-1510915933:159378..159823Clytia hemisphaericaexon
TCONS_00068530-exon-scaffold_485-1510915933:159131..159172TCONS_00068530-exon-scaffold_485-1510915933:159131..159172Clytia hemisphaericaexon
TCONS_00068530-exon-scaffold_485-1510915933:157838..157906TCONS_00068530-exon-scaffold_485-1510915933:157838..157906Clytia hemisphaericaexon
TCONS_00068530-exon-scaffold_485-1491911889:159378..159823TCONS_00068530-exon-scaffold_485-1491911889:159378..159823Clytia hemisphaericaexon
TCONS_00068530-exon-scaffold_485-1491911889:159131..159172TCONS_00068530-exon-scaffold_485-1491911889:159131..159172Clytia hemisphaericaexon
TCONS_00068530-exon-scaffold_485-1491911889:157838..157906TCONS_00068530-exon-scaffold_485-1491911889:157838..157906Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_485supercontigscaffold_485:157838..159823 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
195.017	197.552	328.591	329.008	20.4528	15.4246	6.40178	10.0732	6.40989	7.34175	12.7178	5.81281	4.97217	1.74549	8.19688	6.92736	8.04983	8.33136	3.9255	2.2764	4.64826	9.38337	120.814	108.055	3.66085	2.72166	3.20063	8.82391	52.9869	68.8414
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068530 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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