Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068527 ID=TCONS_00068527|Name=TCONS_00068527|organism=Clytia hemisphaerica|type=transcript|length=2415bpRun BLAST on NCBI protein sequence of TCONS_00068527-protein >TCONS_00068527-protein ID=TCONS_00068527-protein|Name=TCONS_00068527-protein|organism=Clytia hemisphaerica|type=polypeptide|length=587bp MRRFLNVLLVTIFYCLVLFLKCFESLPVTNQVVLDHHSLVRLKQWGYISSRun BLAST on NCBI transcript from alignment at scaffold_485:151211..157461- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068527 ID=TCONS_00068527|Name=TCONS_00068527|organism=Clytia hemisphaerica|type=transcript|length=6251bp|location=Sequence derived from alignment at scaffold_485:151211..157461- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_485:151211..157461- >TCONS_00068527 ID=TCONS_00068527|Name=TCONS_00068527|organism=Clytia hemisphaerica|type=CDS|length=17640bp|location=Sequence derived from alignment at scaffold_485:151211..157461- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00068527 vs. Swiss-Prot (Human)
Match: MMP25 (Matrix metalloproteinase-25 OS=Homo sapiens GN=MMP25 PE=1 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 5.822e-34 Identity = 95/237 (40.08%), Postives = 130/237 (54.85%), Query Frame = 3 Query: 450 QLRLTHKLVDALKTFQRFAYLEPTGRLDNATREKMAAPRCGMPDVIPAEIKNRIKKRFAAQGSKWQNRVVTWQLEN-TNNDGLTVAQVREYMTRSLKKWSDAANIDFREIPPTPAGPQAPASQIRVQFGQGNHGDQFPFDGPSGTLAHAFFPLSNVGLSGDIHFDDAERYTILDPPRSSGLIKFYWVAVXXXXXXXXXXXXXXFGAIMYPFYTHFPG--LEFNLTQDDILGIQSIYG 1151 QL+ KL DA+K QRFA L TGR+D T M PRC +PDV+ R ++R+A GS W+ R +TW++ + + L+ VR M+ +L W + + F E+ PQ I + F + H D +PFDG GTLAHAFFP + +SGD HFDD E +T + + VAVHE GH+LGL HS +IM PFY G ++ L+QDD G+Q +YG Sbjct: 51 QLQSPEKLRDAIKVMQRFAGLPETGRMDPGTVATMRKPRCSLPDVLGVAGLVRRRRRYALSGSVWKKRTLTWRVRSFPQSSQLSQETVRVLMSYALMAWGMESGLTFHEV----DSPQGQEPDILIDFARAFHQDSYPFDGLGGTLAHAFFPGEHP-ISGDTHFDDEETWTFGS--KDGEGTDLFAVAVHEFGHALGLGHSSAPNSIMRPFYQGPVGDPDKYRLSQDDRDGLQQLYG 280 The following BLAST results are available for this feature:
BLAST of TCONS_00068527 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|