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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068506 ID=TCONS_00068506|Name=TCONS_00068506|organism=Clytia hemisphaerica|type=transcript|length=341bp
TGTTGAACCATGTTGCTACTTACAAAATTTTGTTCCTGGTTAATGGGAAG
AAACCATGTTTAGCTTGGTTGATAATCAAATAAAATGAGGTCAACAAGAA
GTAAAGAACCTTCTCCTAAAGTTATTCGACCTGATGAATTTTGTGGGTCT
GGACTGGATCAGCCAGGATTTGAATTATTAAAGATATCAAGTGAAATAGG
TTATGGTGTGgtaacaaaaagatttttcaaatcggGAGACTTTCTACTAG
AATATGCAGGTGAAAGAATATCTAAAAAAGAAGCTACCGATCGGGAAAAA
TCATACGCCAAAAAAGGGATTGGCTGTTATATGTTCACCGA Run BLAST on NCBI transcript from alignment at scaffold_485:613164..619177+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068506 ID=TCONS_00068506|Name=TCONS_00068506|organism=Clytia hemisphaerica|type=transcript|length=6014bp|location=Sequence derived from alignment at scaffold_485:613164..619177+ (Clytia hemisphaerica)
TGTTGAACCATGTTGCTACTTACAAAATTTTGTTCCTGGTTAATGGGAAG
AAACCATGTTTAGCTTGGTTGATAATCAAATAAAATGAGGTCAACAAGAA
GTAAAGAACCTTCTCCTAAAGTTATTCGACCTGATGAATTTTGTGGGTCT
GGACTGGATCAGCCAGGATTTGAATTATTAAAGATATCAAGTGAAATAGG
TTTGTacattttcatgttttatttcTCTGGTTCAAAAGGTCACTTCTTAC
CTCAGTGCAGCAGTGTTATTATACACTTTTTTACCCTCCCCGCCACCTAA
AATGGGAATGACGTTCTCTTATAAACTGAAAAAAggggtttggaaatttt
gctCAATGGGCATGAATTCTTTTAGTCTgatcaggaaaagttttttttgc
atatttttgtgCTTTATAGTAAATTTATGCAATATATACACTGTTAAGGA
GTCTAGTTATCTCCACCGTGTTCCACTGTAAAAACAGTAGGTAAAAATGT
GCACTTTAGTATACTGTGGAAGGTTAAAGGAATATataaacattgtcaat
ttttttcttctatttgaCGAGAATGGTTTAGATAATTAAACattgatatc
aatgataattttatggatctctcctgaaaattcaacaaaaattcatcaag
aggaaaagaagttatgattataAGGAGTTCTTTACTTtatttacctacca
tttctctgctagGATGTAGGAGGTGTGTACAAGAACCAGaattttaccta
ccgtttttttacgggaAAGAGTGGttggacgcgtgcgcagtcgacactac
taAATGGTGTATTCACAACCATTTCCCATTTTTTAGTTTGGTATATATAC
CAGGGCAGgagtagttaatcgatataatcgataatcggcaataatcgata
agtaatcaatggattagatatcaattatccgatagaatcgataggtaatc
agacttttaaaaaatcttgagtattgaCCAGCAatcgattatttccaagc
tatcaattacttatcgattatttatcaattACTCCTGATTATTGATTATA
TCGATTTACGCCTGGTATATGAgggattgaatttttttaagggAATCTTA
TCCGGGTGCCTTTCACcaaaccagacccgatcaatcgaacttgtcgaacc
caATCAAACAATTTGAACTAATCAAACTCAATCGAACAATTAGagttcaa
gtaaaaaattaaacttaagattttttcaaaaattgtgagtgttcgatcaA
GTCCGATATGGGTGACAGTTGGATCAGTTTGATAACCAAATTTCTTTCAA
CAAGTTCATATCGTACCGCTCTGCTTTTTTCAAGACCACCTGCCACATtt
ggaatgtaaatcgggaaattacctCCAATAACAGATTTACACACTTTTCT
GTATCTTTCATTTAACACCCAGAGACGGTTTTTGTTTAGGCGTAAGTATT
CCAACACGCGTGGGCCAAATCGCAACAGAGCAGAACAGAGGGGATACAGA
TTTTATTCCGGATGGACGATTATCCGGGCACAATAATCCATAAGTCCGGA
AACTGTCAAAATGGCAACTTGCCAGCtgcaataaaatgttttttaagtGG
GCAAAGAGGTAAGGATTGGCGGATATTGTAGAAccaatcgaactttttac
tgaccgaactaatcaaactatttcttcaaagattgtgagtgttcgtttag
cttcgattaatttttttactcaaattttttaatcgttcaatggaattcga
ttagttcgatagttcgattggttcgacaagttcgattggttcgacaagtt
cgattgattgggTCTGGACCAAATTGTCTTGAAACTATACGTAACATGGC
TTCTTAAATTCTTGGCTCATGAAATAGTTTCAAGTTCATAAAAATTTTTC
TGTAGTAACTAGGCTTTGGGGCAAACTTGCATAAGTAATAATTTTTGGTG
CCTGTTATTAAATACTTCTAATGAGTTTTTACCAATTGCTTGGTCTTTGC
AGAATTTACCTACGATATGCCCGCGGCCAAGATTTTTGGACCGTACGAAA
CACCACATCTTATTTTATGCATATCCTAAAACCTAAATAGgtaaaattaa
tgtttttacCATAGGTTTTTTGAAGAGGACAGTCTCTTGAATAATTAAGT
AGTCCACCAGAAAGATCATGTAATGAAATACCTTAAAGCAGATGATCAGC
CACACATGTGTACTTTCTAGCTTGCCGCACGGACACTTGTATGTAACAGC
CGTAAAGGAAAAACTTAGCGTGCGGCTGATCATCTGCTTTAAGGTATTTC
ATTACATAATCTTTCTGCTGGACtacttaattattcaacagaccatcctc
tttaaaaaaagtctatttttagaatactcaaacatttttttgttttgttt
tttggaagAGTTTTATTTCGCTTTCCTAGTcttattttttgtatgaaatt
gAACTTGTCCGGCATATTTACTGTATGTAACATTGTTaacatttcaaaaa
tggttgataGGAAAAAGCTGAAACTTATGTCAGGCACCCTTCATTATGAc
ctcattttagaaaaaaaagttaaactcTAACTGTGCTTTATTCTATAGCT
CAATCTTAGTGTTTCATACGGCTTCCTCCTGAAACTGTACGAAACACAGG
TTTTTTTGCTTCTTAAATAATGAGACACAATCTCAGTTTGTTACAGTCCC
CCAGGATGCTTTTACTATaattaacaaattatttttactattaattttca
atttaaaaagttCAGATTAccttaagaaaaaagaaaaattaaaaacatgg
GTCAAAAATGGTATATCTGCCTCAAGGACAGTCAGAgataaacttttgaa
aaaatccatCAATGCTAAAGATCCAATCAATGAAGCTAACCTacatcaaa
aatacaaattttataGAAACTCAATCATCAATTTACTGAAAGCAAGCaca
aataattatttcaaaaattatttcaaccTAAATTCTTCAAACCCTCAAAA
AACCTGGGAAGCAATATAAATGAAGTCatctataaaaataaaaaaaaaca
gtctttAATATTGTTTTACAAAACTCTTCTAAAAAAGACGAAATCATTTC
TGAGTCTACTGAAGTTTCTAAtgaatttaataaatttttcactACCATAG
AAACTAAAATTCAAGCTGAGATACCAAACATtggaaattttaaagaatac
aTAAAAAGACCAACATCAGGCAACTCATTTTTCAAATCCCTAAAAATCAC
AGTAAAAGCTCAGGTCATTTCAGTATTCCTGGTAAAATTTTTGACACGGT
TCCAAACTCCCTTGCaactattttagaaaaaattttttagaaagaatttt
tccaaactCCCTTAAAACTATTAAAGTAATcccagttttcaaaaataagg
gATCTAATCAGGATGTTGATAACTACCGTCCAATTTCACTATCATCGAAC
ATCATTGATAAAATAGTTTTCTCGAGATTAATGTCTTTCCTAGATTTCCA
TGGTATTCTCTCAGAAATACAATTTGGCTTTCGAAAAAATCATTCTACAA
ATCTTGCTCTAATCTCTCTTACTGAAGAGATTCGTAGGTCACTAGATGAT
AACAAGTTCTCCTGTGGTGTTTTCATTGATctgaaaaaagcttttgacac
AGTTGACCACAAAATCATACTAAAGAAATTATAACTCTATGGTATCAGAG
GTATTCCTAATAATTGGTTTCAATCAAAATTCCAATAGAATTCAACATGT
TTCATAATCAGGTGCAAGTTCAAACGcaagtaaaatcttaataagTGTTC
CTCAAGGTTCTGGGCcctcttttatttttaatttacattAATGATCTATG
TAATGCAATTGAACATTTTCCTAACCTCCCCTTTTTGCAGATGACATAAT
CTACTACAGATAAATCTCTTATCAACATTGAAGAAAGTATCAATGCAGAT
ctccaaaatctttttatttggcTTTGTGCAAACAAAATCTCTTTGGATGt
acctaaaaataaattttacttttcagGAATGTACACAAACAAATCAAACA
TAATCTTCAGCTTTCGATTAATAATATTCCCCTAAACTTAAGCGAATCAG
TCAAATACCTTGGAGTAACTCTTGATTAATTTTTAAATTGGAGAATAAAC
ACAAACAATCTATGCTCTAAATTAAGTAGTGCCAATGGAATAATTTCTAA
ACTCAGACATTTTGTTCCTTTATCTACACTACTTCAGATTTTTTATGCTC
TATTTTTTTCGCATCTTAATTATGCTTGCCAAATCTGGGGTCAAAAACAT
AACTATAATGTTAATTATTAATGAAATTAGTTCTTTTCGGCCCTCTTTCA
GAACTTTTATGTATGGTACATAATCTATCACCTATAGTACCATTGTCCAA
TGGAATGATTTACAACAGAATTTTCCTGCTTATCCCTTGACTGACTTATC
TGCTTGTGAACCTAGGATAaacttaaaatcaaattttctgtGCGCCCTTA
CTTCTAGAAAGCTCCACTTTTCAACCACCAGAGGAAACAGTTGCCCCTTC
TGGAATTTTAAGCCAATGTGAATAAATCATGGGGAAAAATCAGGTTctaa
ataaagacaaaaaattccagttttttctattttctttgagaCAATTTGGT
GACCAGCGCCCATCCACTTCTGCACTataacaagtttttttataagagga
ccagtttataaaaatattttaggctagcattttgaaaaagaacgtCATTC
ATAAGGACCTGGCCCTCCTCAGAATTGAAAAGGTTAATGATATTTTCCTT
AATAACTCTTCTTAATAACTCGCGTACAagataaattatatttttctctt
cacCTTTAAGTCACAGgtcaaattttttaataaacaaAAGTATTCCTAAA
GGGATAAATCAGAtgctttttgatttttcgcaaAGAAATATGTTTAAGGT
CCTGAGAATGTGCATGAGATATTTGATTatgaagtttttcatttttgaaa
gcgTAAAAACTGTGAAAACACATTAGAGGTTTTAAAAGCAATTGATTCTg
cttttgaatatattttggccaaaaaaccATGAAAGGCTAATGCTCTGACC
AAAAATCTAAACCTGATTAGCCCTTCAATTCTATGATTTGAAAACGACAA
TAAGAACGTTAGATTGAAAATTACCACACATTAGGCTTGTGTAAAACTAA
AACGCCCCTTGCTTTATTTTCAGGTTATGGTGTGgtaacaaaaagatttt
tcaaatcggGAGACTTTCTACTAGAATATGCAGGTAATTCAATTCATTAT
ATTGTGGGAAATAGGAAAATTCACCATATCATGCTTATTTGTGTCGaccg
atttttaaaaaaattcaaaaataatgcTGCTCGATGGAAAGATAACTTAA
GGGCTTGCATGAAAAATTCCGATGACGTATATATGAAAATTCCCAAAACT
TTTATGGAATTTGGATAATTTTCTAAATATCCCTGATTTTTTGTCTCCTT
ttggtttttaaaagaaagagtCTTGTCGACAAATAGCGAACGGCGGGTAA
TCGTGAGCATTTTGttaaactttgaaataaaagtaaACTACTgaatattt
tcgaatttttttttacacatCGGAGAATGACTATTCACcgaaaatcaaat
taaattgcAAAAAAGACATCAGAAAAGAGTTGATCTAGCTGGCTATAAAG
TATATTCCAATCAAATAAATTGTGCACAGAGAAATTagcaaaaattgact
ttggccgcAATTCGACGACATATTTAAGGCAATTTaatgagttatttttt
taaataatcaaCGATATACATAATGAGTTGTGGATTGGCCTTCGGAAGTT
CCTGTTCTGCTTTTTGAGACACATTGAATTGTTCCTTGACTATTAAGTTT
ACatatacaaaaataacattatTGATTTAAAGGTGAAAGAATATCTAAAA
AAGAAGCTACCGATCGGGAAAAATCATACGCCAAAAAAGGGATTGGCTGT
TATATGTTCACCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068506-exon-scaffold_485-1491911889:613164..613362 | TCONS_00068506-exon-scaffold_485-1491911889:613164..613362 | Clytia hemisphaerica | exon |
| TCONS_00068506-exon-scaffold_485-1510915933:613164..613362 | TCONS_00068506-exon-scaffold_485-1510915933:613164..613362 | Clytia hemisphaerica | exon |
| TCONS_00068506-exon-scaffold_485-1575043694:613164..613362 | TCONS_00068506-exon-scaffold_485-1575043694:613164..613362 | Clytia hemisphaerica | exon |
| TCONS_00068506-exon-scaffold_485-1491911889:618387..618446 | TCONS_00068506-exon-scaffold_485-1491911889:618387..618446 | Clytia hemisphaerica | exon |
| TCONS_00068506-exon-scaffold_485-1510915933:618387..618446 | TCONS_00068506-exon-scaffold_485-1510915933:618387..618446 | Clytia hemisphaerica | exon |
| TCONS_00068506-exon-scaffold_485-1575043694:618387..618446 | TCONS_00068506-exon-scaffold_485-1575043694:618387..618446 | Clytia hemisphaerica | exon |
| TCONS_00068506-exon-scaffold_485-1491911889:619096..619177 | TCONS_00068506-exon-scaffold_485-1491911889:619096..619177 | Clytia hemisphaerica | exon |
| TCONS_00068506-exon-scaffold_485-1510915933:619096..619177 | TCONS_00068506-exon-scaffold_485-1510915933:619096..619177 | Clytia hemisphaerica | exon |
| TCONS_00068506-exon-scaffold_485-1575043694:619096..619177 | TCONS_00068506-exon-scaffold_485-1575043694:619096..619177 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_485 | supercontig | scaffold_485:613164..619177 + |
Blast
The following BLAST results are available for this feature:
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