TCONS_00068505 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068505
Unique NameTCONS_00068505
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1211

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068505 ID=TCONS_00068505|Name=TCONS_00068505|organism=Clytia hemisphaerica|type=transcript|length=1211bp
acagacagacagacagacagacagacagacagacagacagacagacagac
agacagacagacagacagacagaatcCCAGAAAAAAGCCTTTGACTTTGA
ttccttcaactttttccaTCATAGAACAATATCGACATTGAGCATAAATA
CGCACGGACGAACCTCTGGTTGGAATACCTCGGTGATAACAACACCATTC
CTTGTCCCTTCAACTTGCTCCCAACTATGACATGGTTTAGAAAGGTCCTC
AAACACATTGAGATGGCcatcaaaaatgataatatCGACAAAGATAGTga
gaaagaaGCAGCATTGTGTTACCAAAAAGAACAGTATACTCTTCTCTGTA
AACGTCTGATGCAGCGCTACCTTCAAAAACATTACAACACATTTCTGGAT
GATGATGTCATGACAACGCCAATAACGTCACATATACGTCACGATGACGT
CATGGAGGATGACCCTTTCTTATTGATGGTCAAAGAGAAAGTGAAAGTGT
GGTCAAGAGCATTGAATGATGAGAATCAAGAACATGTTAATTTGCCACCA
AACATCATCCATGAAAAGATGGCGGCAGCGATTGACGAAGCGTTCACTGA
TGTTGACGGTGCCATCATGTAAACAAACACACCAAATTGTCACGTGATAA
AACGATACACAATGGTTTTGGACGTTTGCAGGCTCCAAATTGACGTCACT
ACCTCGTATCGCATGAACCTGTTCCCATGGTAACCCCATGGTAACGCATT
TCAAAGAATGGAAAGAGCAAAAAGTGATAACAGAATGCATAAAAGACGTT
GAATTAAATAAATATCAAAGCAAGCAAAAGTTAGAATGACATAACGGAGA
CATTCAAATTGCGAAGAAACTGAATAATTCTCGATTTCGTTGTGGTACAA
ACATTGCTAAAACTGTCCGAGGATGATGCTTGTAAAAGAAAAGCGATAGC
TCGTGATAACATTTATCTTACTTTTCCAAATGAAGGTGAATTTgctcgaa
aaatggtaaaaactATTTTAATGTAAGATATTTAGATGATTCTGATTCGT
ATTCTTTTTAAGTGTTGAGATTATCGATTAAAGCCTTCATTCTCTGGAAT
ACTAGCTCAAAGTGCAAGCTTAAGTTTCTAATAGTTAAAGTTTATAAAAC
TTACCTCCGAGCAATGTTAACCTCAACTCAGTCTTGCCATTCGAAGATCA
ACCTACAAAAA
Run BLAST on NCBI

protein sequence of TCONS_00068505-protein

>TCONS_00068505-protein ID=TCONS_00068505-protein|Name=TCONS_00068505-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MTWFRKVLKHIEMAIKNDNIDKDSEKEAALCYQKEQYTLLCKRLMQRYLQ
KHYNTFLDDDVMTTPITSHIRHDDVMEDDPFLLMVKEKVKVWSRALNDEN
QEHVNLPPNIIHEKMAAAIDEAFTDVDGAIM
Run BLAST on NCBI

transcript from alignment at scaffold_485:552057..554410+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068505 ID=TCONS_00068505|Name=TCONS_00068505|organism=Clytia hemisphaerica|type=transcript|length=2354bp|location=Sequence derived from alignment at scaffold_485:552057..554410+ (Clytia hemisphaerica)
acagacagacagacagacagacagacagacagacagacagacagacagac
agacagacagacagacagacagaatcCCAGAAAAAAGCCTTTGACTTTGA
ttccttcaactttttccaTCATAGAACAATATCGACATTGAGCATAAATA
CGCACGGACGAACCTCTGGTTGGAATACCTCGGTGATAACAACACCATTC
CTTGTCCCTTCAACTTGCTCCCAACTATGACATGGTTTAGAAAGGTCCTC
AAACACATTGAGATGGCcatcaaaaatgataatatCGACAAAGATAGTGT
GAGTATTTCATTAAAAGATAGACAACTTTTTAGAGTGGCGCTAGCACCCA
GGTCGCGATTTTTATAATCAGGCTAAAAAAGCCATGACATAGTAATAATG
CGTCTTTAAGAATTTTCAGTAATTTACGGCGGCAATCTTTGAGACGGGCC
CATTGCACTGTCAATATTTGGCTACGAATATAGAAGATCAAAATAATGAG
GTGCCTTTGAGACAGAACATCTAAAACTTACTTTTGTAACAGTTACATTG
ATATTGAATCAACAAAATTGGCTTAATCAAAGAGAGAAATTTTCTCAGTA
AAACTCAtttatttttccaggagaaagaaGCAGCATTGTGTTACCAAAAA
GAACAGTATACTGTAAGTTGAACAATCTTCAACAATTTATTCGCAATGTT
GAAAGAACTTTTAGTCAAAATCATTATAGGATTTTCAAGTTGCGATAATT
CTTAGAATTTCGATGACTTTCAACTCGGCTGTAACTTGAGCACTGCGCTG
TGTGTGTGGCACCTTAAGATTCTGACCAGAGTATTTCACAGACCGAGAAA
ATCTttaacaataataaaaaaataataataataaaacatATTTGTAGTAG
CTGGTCATggaataattttcaaacttttaggcACCCAGGGGCCACTTTGG
GGGAAGGGGGCATGAACGGTTAGAGTAACAAGAACAAGAACGAGAAAAAA
GAACAGGATAATAAATATAACAAAGCACGgtttgattggtcgagaaagTG
CTTTTACTAAAAACTGTATACCTTAACCAATAAACACCTCACTCTTACAC
CATAGCTTCTCTGTAAACGTCTGATGCAGCGCTACCTTCAAAAACATTAC
AACACATTTCTGGATGATGATGTCATGACAACGCCAATAACGTCACATAT
ACGTCACGATGACGTCATGGAGGATGACCCTTTCTTATTGATGGTCAAAG
AGAAAGTGAAAGTGTGGTCAAGAGCATTGAATGATGAGAATCAAGAACAT
GTTAATGTATGTCCACCGTTTCTTCCCAGCTGATGGCACAccacgttgtt
tcaacgttcatctaaagtTACCAGGAcagacgttgaaacaatgttgtatG
TCACTTTCTTTCTTGCTTTTGAATCCAGCTGCTGTGGAAAGCCTAACGGT
TTTTGTGCTTGAGGATTTCaaatttatcatttggaatCCAGTAAAGATAG
AAATTTAGTCCAAATATTCAACAGTTTCTAGGAGTTTAACTTAGTTTTCC
AAATAAAGGGAGGGGAGAGGCAAGATTTCACCAAAAAGGAGAATATGCAT
GGTACATATAAAATGTTGAATCACTGAACAAACTAATACAGTTTacttca
aaatgtttttgagtCATTTTTCTCTCCTTTCTAGTTGCCACCAAACATCA
TCCATGAAAAGATGGCGGCAGCGATTGACGAAGCGTTCACTGATGTTGAC
GGTGCCATCATGTAAACAAACACACCAAATTGTCACGTGATAAAACGATA
CACAATGGTTTTGGACGTTTGCAGGCTCCAAATTGACGTCACTACCTCGT
ATCGCATGAACCTGTTCCCATGGTAACCCCATGGTAACGCATTTCAAAGA
ATGGAAAGAGCAAAAAGTGATAACAGAATGCATAAAAGACGTTGAATTAA
ATAAATATCAAAGCAAGCAAAAGTTAGAATGACATAACGGAGACATTCAA
ATTGCGAAGAAACTGAATAATTCTCGATTTCGTTGTGGTACAAACATTGC
TAAAACTGTCCGAGGATGATGCTTGTAAAAGAAAAGCGATAGCTCGTGAT
AACATTTATCTTACTTTTCCAAATGAAGGTGAATTTgctcgaaaaatggt
aaaaactATTTTAATGTAAGATATTTAGATGATTCTGATTCGTATTCTTT
TTAAGTGTTGAGATTATCGATTAAAGCCTTCATTCTCTGGAATACTAGCT
CAAAGTGCAAGCTTAAGTTTCTAATAGTTAAAGTTTATAAAACTTACCTC
CGAGCAATGTTAACCTCAACTCAGTCTTGCCATTCGAAGATCAACCTACA
AAAA

Coding sequence (CDS) from alignment at scaffold_485:552057..554410+

>TCONS_00068505 ID=TCONS_00068505|Name=TCONS_00068505|organism=Clytia hemisphaerica|type=CDS|length=1584bp|location=Sequence derived from alignment at scaffold_485:552057..554410+ (Clytia hemisphaerica)
ATGACATGGTTTAGAAAGGTCCTCAAACACATTGAGATGGCcatcaaaaa
tgataatatCGACAAAGATAGTgagaaagaaGCAGCATTGTGTTACCAAA
AAGAACAGTATACTCTTCTCTGTAAACGTCTGATGCAGCGCTACCTTCAA
AAACATTACAACACATTTCTGGATGATGATGTCATGACAACGCCAATAAC
GTCACATATACGTCACGATGACGTCATGGAGGATGACCCTTTCTTATTGA
TGGTCAAAGAGAAAGTGAAAGTGTGGTCAAGAGCATTGAATGATGAGAAT
CAAGAACATGTTAATTTGCCACCAAACATCATCCATGAAAAGATGGCGGC
AGCGATTGACGAAGCGTTCACTGATGTTGACGGTGCCATCATGTAAATGA
CATGGTTTAGAAAGGTCCTCAAACACATTGAGATGGCcatcaaaaatgat
aatatCGACAAAGATAGTgagaaagaaGCAGCATTGTGTTACCAAAAAGA
ACAGTATACTCTTCTCTGTAAACGTCTGATGCAGCGCTACCTTCAAAAAC
ATTACAACACATTTCTGGATGATGATGTCATGACAACGCCAATAACGTCA
CATATACGTCACGATGACGTCATGGAGGATGACCCTTTCTTATTGATGGT
CAAAGAGAAAGTGAAAGTGTGGTCAAGAGCATTGAATGATGAGAATCAAG
AACATGTTAATTTGCCACCAAACATCATCCATGAAAAGATGGCGGCAGCG
ATTGACGAAGCGTTCACTGATGTTGACGGTGCCATCATGTAAATGACATG
GTTTAGAAAGGTCCTCAAACACATTGAGATGGCcatcaaaaatgataata
tCGACAAAGATAGTgagaaagaaGCAGCATTGTGTTACCAAAAAGAACAG
TATACTCTTCTCTGTAAACGTCTGATGCAGCGCTACCTTCAAAAACATTA
CAACACATTTCTGGATGATGATGTCATGACAACGCCAATAACGTCACATA
TACGTCACGATGACGTCATGGAGGATGACCCTTTCTTATTGATGGTCAAA
GAGAAAGTGAAAGTGTGGTCAAGAGCATTGAATGATGAGAATCAAGAACA
TGTTAATTTGCCACCAAACATCATCCATGAAAAGATGGCGGCAGCGATTG
ACGAAGCGTTCACTGATGTTGACGGTGCCATCATGTAAATGACATGGTTT
AGAAAGGTCCTCAAACACATTGAGATGGCcatcaaaaatgataatatCGA
CAAAGATAGTgagaaagaaGCAGCATTGTGTTACCAAAAAGAACAGTATA
CTCTTCTCTGTAAACGTCTGATGCAGCGCTACCTTCAAAAACATTACAAC
ACATTTCTGGATGATGATGTCATGACAACGCCAATAACGTCACATATACG
TCACGATGACGTCATGGAGGATGACCCTTTCTTATTGATGGTCAAAGAGA
AAGTGAAAGTGTGGTCAAGAGCATTGAATGATGAGAATCAAGAACATGTT
AATTTGCCACCAAACATCATCCATGAAAAGATGGCGGCAGCGATTGACGA
AGCGTTCACTGATGTTGACGGTGCCATCATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042729XLOC_042729Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068505-exon-scaffold_485-1491911889:552057..552354TCONS_00068505-exon-scaffold_485-1491911889:552057..552354Clytia hemisphaericaexon
TCONS_00068505-exon-scaffold_485-1510915933:552057..552354TCONS_00068505-exon-scaffold_485-1510915933:552057..552354Clytia hemisphaericaexon
TCONS_00068505-exon-scaffold_485-1575043694:552057..552354TCONS_00068505-exon-scaffold_485-1575043694:552057..552354Clytia hemisphaericaexon
TCONS_00068505-exon-scaffold_485-1491911889:552677..552718TCONS_00068505-exon-scaffold_485-1491911889:552677..552718Clytia hemisphaericaexon
TCONS_00068505-exon-scaffold_485-1510915933:552677..552718TCONS_00068505-exon-scaffold_485-1510915933:552677..552718Clytia hemisphaericaexon
TCONS_00068505-exon-scaffold_485-1575043694:552677..552718TCONS_00068505-exon-scaffold_485-1575043694:552677..552718Clytia hemisphaericaexon
TCONS_00068505-exon-scaffold_485-1491911889:553162..553362TCONS_00068505-exon-scaffold_485-1491911889:553162..553362Clytia hemisphaericaexon
TCONS_00068505-exon-scaffold_485-1510915933:553162..553362TCONS_00068505-exon-scaffold_485-1510915933:553162..553362Clytia hemisphaericaexon
TCONS_00068505-exon-scaffold_485-1575043694:553162..553362TCONS_00068505-exon-scaffold_485-1575043694:553162..553362Clytia hemisphaericaexon
TCONS_00068505-exon-scaffold_485-1491911889:553741..554410TCONS_00068505-exon-scaffold_485-1491911889:553741..554410Clytia hemisphaericaexon
TCONS_00068505-exon-scaffold_485-1510915933:553741..554410TCONS_00068505-exon-scaffold_485-1510915933:553741..554410Clytia hemisphaericaexon
TCONS_00068505-exon-scaffold_485-1575043694:553741..554410TCONS_00068505-exon-scaffold_485-1575043694:553741..554410Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068505-proteinTCONS_00068505-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_485supercontigscaffold_485:552057..554410 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0766011	0.0714225	0.213871	0.17047	0.151881	0.0390737	0.89461	1.29442	1.52846	1.15871	1.07111	1.11219	1.49224	1.75009	0.368423	0.372199	1.44425	1.91808	6.05397	7.28839	3.88607	4.08702	1.76324	2.7528	1.79817	2.07579	13.4686	10.5729	0.0814753	0.256663
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068505 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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