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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068504 ID=TCONS_00068504|Name=TCONS_00068504|organism=Clytia hemisphaerica|type=transcript|length=1133bp CTCACGtttgtttttctcatttctagatATAATGTCTCATAAGTAATATT CTCTAGTGTTTGAAATACTGTAAATACTTACACATGTGATACAATTTTGT GTGGTATACAGGCTATCAATGGACGCTCCATGGAGGGAGACTGTCAACAT GGAGAATTTCGAGGCTAGTGAAACAATCCAAACACAATGGTGTCAATTAC TGGTGGAAGCACTACAACGAAAACATTACCTAGCAACCAAATCTTTGTTA CGTCTCGCTGACCTCATCTACGGAGGTGATCGAGGCACACATCCTAGCAA CGTACAAAACAATGACTTTCACTTGTATTTTCGCAACAAAGAACTGACTG GTTCAGAGAGACAACGAAAACATGATTCAGAAAATATTTCGCCCTACATG AGGTCTATACGTGAATCGAAATTCTCTTACTTTATGGTCCTCGCTGTGCA AACaaacaatttgaaaatcatacGATTATTGCTGACTCATCAGTTTAATA TTCTTTGGCCTCACTTACTCGACTGTCGTTGCTGGTTATGTGAGAGTGAT AAACTTGGGCAAGCGAAGCGAAGAATAGAGACAATGCAAGCGTTATCAAA TCCTTTGTGGATCAACCTGACTTGCAAAGATCCCTTTTTGACGAGTTTTC GGATCATCAAGACCTGCCGGTTGTTTCGCGCACAACAAGATTGTTATGAA AAGGAGTACAATCTACTGACCAGACAAAATGTTAACTTTTGCACTGGCTT GTTAGACCAGATCCAAAACGAAAAAGAAGTGAAACATTTGATGAGATGGA GAGAAAGTAATTTCGAACCTTTCAAAGATATCCATCAATTGGCGTTCATT CGATTGGGTTTCAAATACAACGTACCAGAGGTGGTGGCGCATGCTGTTCC CCAACATGTCATCATGCATATCGTGAGCGAAGGGATACCCGGATGGAAGT CCGGCGGAATCGTCTACCGGTTAATTTTCATCGCGTTGGTGGCTTTGTTT TATCCATTCACTGCAATCATACGAATCTTGGCACCTGAATCTTATATAGG ACGAATGGCTGTTAAACCGCTCATCAAATTCATCAATAGTGTGGCTTCCT ATATCACACTGCTTAGTGAGTCTTTCGTTCATT Run BLAST on NCBI protein sequence of TCONS_00068504-protein >TCONS_00068504-protein ID=TCONS_00068504-protein|Name=TCONS_00068504-protein|organism=Clytia hemisphaerica|type=polypeptide|length=338bp
MDAPWRETVNMENFEASETIQTQWCQLLVEALQRKHYLATKSLLRLADLI YGGDRGTHPSNVQNNDFHLYFRNKELTGSERQRKHDSENISPYMRSIRES KFSYFMVLAVQTNNLKIIRLLLTHQFNILWPHLLDCRCWLCESDKLGQAK RRIETMQALSNPLWINLTCKDPFLTSFRIIKTCRLFRAQQDCYEKEYNLL TRQNVNFCTGLLDQIQNEKEVKHLMRWRESNFEPFKDIHQLAFIRLGFKY NVPEVVAHAVPQHVIMHIVSEGIPGWKSGGIVYRLIFIALVALFYPFTAI IRILAPESYIGRMAVKPLIKFINSVASYITLLSESFVH Run BLAST on NCBI transcript from alignment at scaffold_485:536335..541037+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068504 ID=TCONS_00068504|Name=TCONS_00068504|organism=Clytia hemisphaerica|type=transcript|length=4703bp|location=Sequence derived from alignment at scaffold_485:536335..541037+ (Clytia hemisphaerica) CTCACGtttgtttttctcatttctagatATAATGTCTCATAAGTAATATT
CTCTAGTGTTTGAAATACTGTAAATACTTACACATGTGATACAATTTTGT
GTGGTATACAGGCTATCAATGGACGCTCCATGGAGGGAGACTGTCAACAT
GGAGAATTTCGAGGCTAGTGAAACAATCCAAACACAATGGTGTCAATTAC
TGGTGGAAGCACTACAACGAAAACATTACCTAGCAACCAAATCTTTGTTA
CGTCTCGCTGACCTCATCTACGGAGGTGATCGAGGCACACATCCTAGCAA
CGTACAAAACAATGACTTTCACTTGTATTTTCGCAACAAAGAACTGACTG
GTTCAGAGAGACAACGAAAACATGATTCAGAAAATATTTCGCCCTACATG
AGGTCTATACGTGAATCGAAATTCTCTTACTTTATGGTCCTCGCTGTGCA
AACaaacaatttgaaaatcatacGATTATTGCTGACTCATCAGTTTAATA
TTCTTTGGCCTCACTTACTCGACTGTCGTTGCTGGTTATGTGAGAGTGAT
AAACTTGGGCAAGCGAAGCGAAGAATAGAGACAATGCAAGCGTTATCAAA
TCCTTTGTGGATCAACCTGACTTGCAAAGATCCCTTTTTGACGAGTTTTC
GGATCATCAAGACCTGCCGGTTGTTTCGCGCACAACAAGATTGTTATGAA
AAGGAGTACAATCTACTGACCAGACAAAATGTTAACTTTTGCACTGGCTT
GTTAGACCAGGTAAGGAAAAGCTTACACTTAAAATGATGGTGTAAATTTG
CCTTCTGATTTTCAGGTCAGGTTTGTTTTCACATCAAAGCTTTCACATCA
AACTTCATAGGATATTTCAATGCCGAAATGAATCAAGGGTAATCAGCGAA
GACAGAAAACCACAAAAATTTTAGACCAACTTAAAGTCCTTTCAACCGTA
AAATAGCATATCAAGCCCCAATCATATTTTGAAATtcctaaatatttgaa
aatcggATTTCAAATGACAAAGCTGTTTACTCTTGAACGTAATTTCACGT
TAAAGGGGATTGGGTCCGATTTTACCAATGTCCAATGACGTCAAAtaatt
gaagtcgttgcattggcACCCTAAAGGCTGTTTCTCTGTCCTTATCATTG
AGCGGGTGTTTCTTAAAATGGTACTTTAATAAaccactactcaatagcgg
tgtgaATGCATCGGAAGCCTTAGATGTATTTTTCCTTGGACACCTGTAAT
GTAAATTTAatactgcaatggcttctttgcttCGATGTAGCTTAGTCCAG
CGTTTATTTAAAAGTCCTTGCCTAGTATGCCTGACCTCAACTCTTTCGAA
CGTGAGGGTTAATATCCGATAAAGTCATTGCTTGTAGACTTAATCCCAAT
CACCTTCAAACTTTAAGTAGGGTTAAtggagccccccccccccaagcgga
tcaattcacgcaatcacataaattgtttttccaattcacgcattcaagca
tttttaaaaatctttcacgcattcacgcaaaccactgggggGGGCCTAAA
TAGGCGTATACTTATTCAAtactttccaaattttttctCTTGTTTCATGA
ACAGATCCAAAACGAAAAAGAAGTGAAACATTTGATGAGATGGAGAGAAA
GTAATTTCGAACCTTTCAAAGATATCCATCAATTGGCGTTCATTCGATTG
GGTTTCAAATACAACGTACCAGAGGTTTGTGAGTCGTTCAATTCATTGTt
tatcactgacctttatactaggtcacagtgtggatctaaaccacactgaa
acgaccgccttccatcacgctcgcgaatgagcgcgcgcacattattaacg
cacATGTAAcgtacatgtcatctccagtacattttagattattcattgaa
aacagattacaatatagtcatNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NGTAGAcgaagtaatgagccaaggcaaaacgagattagcgtaccactatg
aaagaaaccgcctccggcggtcgaaaaTAGTTTCTCTATCACAACCaata
aaatctttgatcggagtttgtTTTGAGAGTGGTatcctaatggtagcact
actcaatacTTCCTGCTATAAGTAagcttttgatgatgtagcgtgTTAAT
TTTAACACTAGAAAAACACTCTCAAAAAACTCCTAATAAAGATGGTCAGG
TATAGCTTTGTCCAGGGATGTATAAAGGTCAATGGGTATGCCAACAGCAG
ACTCACTTTTGGAGATGTGACAGTCAGACAGGGGTTTGAAAAACAGGAAT
TGTCTTACCTTTTTCTCTCTCCATTGAAGCACAGCTGGGATTACAATATT
CTTGAAACAACAACCTTCTTCCAAATACctgaataagaaaaaaaaacatt
gatataTTCCACGGGATTTAGTTGGAATTTCACTAAAACCTGGACTTAAC
AAACTGTAAATTTGTCATTGTAGGATGACTCCACCAGAACAAAGCTCATT
TGGTAGGGCGACGGGGAAATAAAAATATAGTAGCGGCTTATAGAGTATTT
GCGCTCGTTAGGAACTTTGTCCTTGTAAAACACTGATTTTATACGGGATT
GAGattcaaattaattttcatgAGAGCCTCAAGTTTGTCCATTACAAAGC
TGAATTCTTTTAGAGATAAAaattacaatgtatagcaatgtgccctcccg
gttattaccataatggctttatggcaactcctgaacttgggcacaagTAT
ATTTATATACGGtattaaaattattaaaaaaattgaatctcaTTTATCAG
GTGGTGGCGCATGCTGTTCCCCAACATGTCATCATGCATATCGTGAGCGA
AGGGATACCCGGATGGAAGTCCGGCGGAATCGTCTACCGGTTAATTTTCA
TCGCGTTGGTGGCTTTGTTTTATCCATTCACTGCAATCATACGAATCTTG
GCACCTGAATCTTATATAGGACGAATGGCTGTTAAACCGCTCATCAAATT
CATCAATAGTGTGGCTTCCTATATCACACTGCTTAGTGAGTCTTTCGTTC
ATT Coding sequence (CDS) from alignment at scaffold_485:536335..541037+ >TCONS_00068504 ID=TCONS_00068504|Name=TCONS_00068504|organism=Clytia hemisphaerica|type=CDS|length=3042bp|location=Sequence derived from alignment at scaffold_485:536335..541037+ (Clytia hemisphaerica) ATGGACGCTCCATGGAGGGAGACTGTCAACATGGAGAATTTCGAGGCTAG TGAAACAATCCAAACACAATGGTGTCAATTACTGGTGGAAGCACTACAAC GAAAACATTACCTAGCAACCAAATCTTTGTTACGTCTCGCTGACCTCATC TACGGAGGTGATCGAGGCACACATCCTAGCAACGTACAAAACAATGACTT TCACTTGTATTTTCGCAACAAAGAACTGACTGGTTCAGAGAGACAACGAA AACATGATTCAGAAAATATTTCGCCCTACATGAGGTCTATACGTGAATCG AAATTCTCTTACTTTATGGTCCTCGCTGTGCAAACaaacaatttgaaaat catacGATTATTGCTGACTCATCAGTTTAATATTCTTTGGCCTCACTTAC TCGACTGTCGTTGCTGGTTATGTGAGAGTGATAAACTTGGGCAAGCGAAG CGAAGAATAGAGACAATGCAAGCGTTATCAAATCCTTTGTGGATCAACCT GACTTGCAAAGATCCCTTTTTGACGAGTTTTCGGATCATCAAGACCTGCC GGTTGTTTCGCGCACAACAAGATTGTTATGAAAAGGAGTACAATCTACTG ACCAGACAAAATGTTAACTTTTGCACTGGCTTGTTAGACCAGATCCAAAA CGAAAAAGAAGTGAAACATTTGATGAGATGGAGAGAAAGTAATTTCGAAC CTTTCAAAGATATCCATCAATTGGCGTTCATTCGATTGGGTTTCAAATAC AACGTACCAGAGGTGGTGGCGCATGCTGTTCCCCAACATGTCATCATGCA TATCGTGAGCGAAGGGATACCCGGATGGAAGTCCGGCGGAATCGTCTACC GGTTAATTTTCATCGCGTTGGTGGCTTTGTTTTATCCATTCACTGCAATC ATACGAATCTTGGCACCTGAATCTTATATAGGACGAATGGCTGTTAAACC GCTCATCAAATTCATCAATAGTGTGGCTTCCTATATCACACTGCTTAGTG AGTCTTTCGTTCATATGGACGCTCCATGGAGGGAGACTGTCAACATGGAG AATTTCGAGGCTAGTGAAACAATCCAAACACAATGGTGTCAATTACTGGT GGAAGCACTACAACGAAAACATTACCTAGCAACCAAATCTTTGTTACGTC TCGCTGACCTCATCTACGGAGGTGATCGAGGCACACATCCTAGCAACGTA CAAAACAATGACTTTCACTTGTATTTTCGCAACAAAGAACTGACTGGTTC AGAGAGACAACGAAAACATGATTCAGAAAATATTTCGCCCTACATGAGGT CTATACGTGAATCGAAATTCTCTTACTTTATGGTCCTCGCTGTGCAAACa aacaatttgaaaatcatacGATTATTGCTGACTCATCAGTTTAATATTCT TTGGCCTCACTTACTCGACTGTCGTTGCTGGTTATGTGAGAGTGATAAAC TTGGGCAAGCGAAGCGAAGAATAGAGACAATGCAAGCGTTATCAAATCCT TTGTGGATCAACCTGACTTGCAAAGATCCCTTTTTGACGAGTTTTCGGAT CATCAAGACCTGCCGGTTGTTTCGCGCACAACAAGATTGTTATGAAAAGG AGTACAATCTACTGACCAGACAAAATGTTAACTTTTGCACTGGCTTGTTA GACCAGATCCAAAACGAAAAAGAAGTGAAACATTTGATGAGATGGAGAGA AAGTAATTTCGAACCTTTCAAAGATATCCATCAATTGGCGTTCATTCGAT TGGGTTTCAAATACAACGTACCAGAGGTGGTGGCGCATGCTGTTCCCCAA CATGTCATCATGCATATCGTGAGCGAAGGGATACCCGGATGGAAGTCCGG CGGAATCGTCTACCGGTTAATTTTCATCGCGTTGGTGGCTTTGTTTTATC CATTCACTGCAATCATACGAATCTTGGCACCTGAATCTTATATAGGACGA ATGGCTGTTAAACCGCTCATCAAATTCATCAATAGTGTGGCTTCCTATAT CACACTGCTTAGTGAGTCTTTCGTTCATATGGACGCTCCATGGAGGGAGA CTGTCAACATGGAGAATTTCGAGGCTAGTGAAACAATCCAAACACAATGG TGTCAATTACTGGTGGAAGCACTACAACGAAAACATTACCTAGCAACCAA ATCTTTGTTACGTCTCGCTGACCTCATCTACGGAGGTGATCGAGGCACAC ATCCTAGCAACGTACAAAACAATGACTTTCACTTGTATTTTCGCAACAAA GAACTGACTGGTTCAGAGAGACAACGAAAACATGATTCAGAAAATATTTC GCCCTACATGAGGTCTATACGTGAATCGAAATTCTCTTACTTTATGGTCC TCGCTGTGCAAACaaacaatttgaaaatcatacGATTATTGCTGACTCAT CAGTTTAATATTCTTTGGCCTCACTTACTCGACTGTCGTTGCTGGTTATG TGAGAGTGATAAACTTGGGCAAGCGAAGCGAAGAATAGAGACAATGCAAG CGTTATCAAATCCTTTGTGGATCAACCTGACTTGCAAAGATCCCTTTTTG ACGAGTTTTCGGATCATCAAGACCTGCCGGTTGTTTCGCGCACAACAAGA TTGTTATGAAAAGGAGTACAATCTACTGACCAGACAAAATGTTAACTTTT GCACTGGCTTGTTAGACCAGATCCAAAACGAAAAAGAAGTGAAACATTTG ATGAGATGGAGAGAAAGTAATTTCGAACCTTTCAAAGATATCCATCAATT GGCGTTCATTCGATTGGGTTTCAAATACAACGTACCAGAGGTGGTGGCGC ATGCTGTTCCCCAACATGTCATCATGCATATCGTGAGCGAAGGGATACCC GGATGGAAGTCCGGCGGAATCGTCTACCGGTTAATTTTCATCGCGTTGGT GGCTTTGTTTTATCCATTCACTGCAATCATACGAATCTTGGCACCTGAAT CTTATATAGGACGAATGGCTGTTAAACCGCTCATCAAATTCATCAATAGT GTGGCTTCCTATATCACACTGCTTAGTGAGTCTTTCGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00068504-exon-scaffold_485-1491911889:536335..537094 | TCONS_00068504-exon-scaffold_485-1491911889:536335..537094 | Clytia hemisphaerica | exon |
TCONS_00068504-exon-scaffold_485-1510915933:536335..537094 | TCONS_00068504-exon-scaffold_485-1510915933:536335..537094 | Clytia hemisphaerica | exon |
TCONS_00068504-exon-scaffold_485-1575043694:536335..537094 | TCONS_00068504-exon-scaffold_485-1575043694:536335..537094 | Clytia hemisphaerica | exon |
TCONS_00068504-exon-scaffold_485-1491911889:537939..538058 | TCONS_00068504-exon-scaffold_485-1491911889:537939..538058 | Clytia hemisphaerica | exon |
TCONS_00068504-exon-scaffold_485-1510915933:537939..538058 | TCONS_00068504-exon-scaffold_485-1510915933:537939..538058 | Clytia hemisphaerica | exon |
TCONS_00068504-exon-scaffold_485-1575043694:537939..538058 | TCONS_00068504-exon-scaffold_485-1575043694:537939..538058 | Clytia hemisphaerica | exon |
TCONS_00068504-exon-scaffold_485-1491911889:540785..541037 | TCONS_00068504-exon-scaffold_485-1491911889:540785..541037 | Clytia hemisphaerica | exon |
TCONS_00068504-exon-scaffold_485-1510915933:540785..541037 | TCONS_00068504-exon-scaffold_485-1510915933:540785..541037 | Clytia hemisphaerica | exon |
TCONS_00068504-exon-scaffold_485-1575043694:540785..541037 | TCONS_00068504-exon-scaffold_485-1575043694:540785..541037 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_485 | supercontig | scaffold_485:536335..541037 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR013555 | TRP_dom |
Blast
BLAST of TCONS_00068504 vs. Swiss-Prot (Human)
Match: TRPC5 (Short transient receptor potential channel 5 OS=Homo sapiens GN=TRPC5 PE=1 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 1.145e-32 Identity = 85/284 (29.93%), Postives = 146/284 (51.41%), Query Frame = 2
Query: 311 NDFHLYFRNKELTGSER----QRKHDSENISPYMRSIRESKFSYF------MVLAVQTNNLKIIRLLLTHQFNILWPHLLDCRCWLC----ESDKLGQAKRRIETMQALSNPLWINLTCKDPFLTSFRIIKTCRLFRAQQDCYEKEYNLLTRQNVNFCTGLLDQIQNEKEVKHLMRWRESNFEPF--KDIHQLAFIRLGFKYNVPEVVAHAVPQHVIMHIVSEGIPGWKSGGIVYRLIFIALVALFYPFTAIIRILAPESYIGRMAVKPLIKFINSVASYITLL 1114
D LY KE+ G+ R+ E P + + +++FS F ++LA TNN +II+LL+ + I PH + C C C E D L ++ R+ +AL++P I L+ +DP LT+FR+ + ++ ++ EY L++Q F LLDQ ++ +E++ ++ R+ + E + H LA +++ KY+ E VA Q ++ + +G PGW+ V +L+ + +P +I +++P S +G KP IKFI ASY+T L
Sbjct: 97 GDALLYAIRKEVVGAVELLLSYRRPSGEKQVPTL--MMDTQFSEFTPDITPIMLAAHTNNYEIIKLLVQKRVTIPRPHQIRCNCVECVSSSEVDSLRHSRSRLNIYKALASPSLIALSSEDPILTAFRLGWELKELSKVENEFKAEYEELSQQCKLFAKDLLDQARSSRELEIILNHRDDHSEELDPQKYHDLAKLKVAIKYHQKEFVAQPNCQQLLATLWYDGFPGWRRKHWVVKLLTCMTIGFLFPMLSIAYLISPRSNLGLFIKKPFIKFICHTASYLTFL 378
The following BLAST results are available for this feature:
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