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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068494 ID=TCONS_00068494|Name=TCONS_00068494|organism=Clytia hemisphaerica|type=transcript|length=727bp
caaaatcatttttgttcGGACCTCCTCTTGAGGTCGAGTAAATGTTGCAT
GAAATTATAAACACCGATCATCCAAAATAGTCCTTATAATATGGTCAGAA
CTATTAGATTTCGGGATCGTTGAAGATATGAACTTTTTCACTATCATGGT
TAGCTTTCTGGTAGTTAGCAGTTCATTCAAAGATTGTTACCACTGTCTAC
CAACAATTGTAACTTCTTCTGATCAGCGAAAATCATTCTCAACCAATGAT
GATGGACAactgaaaactgaaaattccGACGACGGCAAAAGGACCTCGGG
TAGCGCAAGTGGCGGAGAAATTTCTTTAGACTTACAACGAGACAATATAA
TACAGATATATTCCTATAAATATGTTCAAAATCAGCTCCCCTCATCAGAT
GTAAACCGACATGGAACGGTTTTAGCGAGAAAGAAATCGGAATTACATTT
GGAGAAGGATCATTCGGAAGAAAGTGGTTCTCAAGAACAAGAAGCAGAGA
TTATTGAAATTGATGACACTCAGTTTTCATCGGGCAAAGGCTCAGCAGCT
AGTGGGTCAGGTTGGTCGGACTCCTATCACATCTCCATTTGAGATGATTG
AGAATGGTTTTCATATGGTTTATGTCATTGCATGAGTTGATGATTAGCAA
AAAGATATATCAAATAAATCTGCACTCATTTGGCATTTTGTTTTGCTTCA
AACCCCAGTCTCGTACCTAGAGCCACC Run BLAST on NCBI protein sequence of TCONS_00068494-protein >TCONS_00068494-protein ID=TCONS_00068494-protein|Name=TCONS_00068494-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MNFFTIMVSFLVVSSSFKDCYHCLPTIVTSSDQRKSFSTNDDGQLKTENS
DDGKRTSGSASGGEISLDLQRDNIIQIYSYKYVQNQLPSSDVNRHGTVLA
RKKSELHLEKDHSEESGSQEQEAEIIEIDDTQFSSGKGSAASGSGWSDSY
HISI Run BLAST on NCBI transcript from alignment at scaffold_485:268285..269568+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068494 ID=TCONS_00068494|Name=TCONS_00068494|organism=Clytia hemisphaerica|type=transcript|length=1284bp|location=Sequence derived from alignment at scaffold_485:268285..269568+ (Clytia hemisphaerica)
caaaatcatttttgttcGGACCTCCTCTTGAGGTCGAGTAAATGTTGCAT
GAAATTATAAACACCGATCATCCGNGACCTCCTCTTGAGGTCTAGTAAAT
GTTGCATGAAATTATAAACACGGAACATCCAAAATAGTCCTTATAATATG
GTCAGAACTATTAGATTTCGGGATCGTTGAAGATATGAACTTTTTCACTA
TCATGGTTAGCTTTCTGGTAGTTAGCAGTTGTAAGTATACATTTGCGAAT
CTATTTTCACGAGTATGCAGTTATAATAAACAAAGCCCAATCGATTCTGT
TCAGTCAACCATCTACCGTACTTACCTATGTAtaataacaatccaaaagt
tcccttAACAATGAAatcaatctgattggttgaatctCAAAATTATGATG
TAATTGACCTAAATGAACCAATCAGTGCTCAGAAAAAGCATTTGTTTCTG
TTTGTTTGTTAAGGGAAAGTTTGGATTATAATAGGTAAGTACGGTattat
tcgaacgttcgaacctATGATTCAAATCGTTCTGTGATTCGAACTAAACA
GTGGTCCCCTCAACTGGAAAGTCTGATCAAATACTCTCCGTAATTCGATA
AAAACTATTATGGTCTTGTAAAGATCGTATTGGAGAGCCAACTGTAGATT
CTCAATTTCAAAACTTGATTTAGGTCACAAATACTGAATGAGTGTTTGTA
ATCTAACTGTAATTCTTTCTTGTTTCAAAGCATTCAAAGATTGTTACCAC
TGTCTACCAACAATTGTAACTTCTTCTGATCAGCGAAAATCATTCTCAAC
CAATGATGATGGACAactgaaaactgaaaattccGACGACGGCAAAAGGA
CCTCGGGTAGCGCAAGTGGCGGAGAAATTTCTTTAGACTTACAACGAGAC
AATATAATACAGATATATTCCTATAAATATGTTCAAAATCAGCTCCCCTC
ATCAGATGTAAACCGACATGGAACGGTTTTAGCGAGAAAGAAATCGGAAT
TACATTTGGAGAAGGATCATTCGGAAGAAAGTGGTTCTCAAGAACAAGAA
GCAGAGATTATTGAAATTGATGACACTCAGTTTTCATCGGGCAAAGGCTC
AGCAGCTAGTGGGTCAGGTTGGTCGGACTCCTATCACATCTCCATTTGAG
ATGATTGAGAATGGTTTTCATATGGTTTATGTCATTGCATGAGTTGATGA
TTAGCAAAAAGATATATCAAATAAATCTGCACTCATTTGGCATTTTGTTT
TGCTTCAAACCCCAGTCTCGTACCTAGAGCCACC Coding sequence (CDS) from alignment at scaffold_485:268285..269568+ >TCONS_00068494 ID=TCONS_00068494|Name=TCONS_00068494|organism=Clytia hemisphaerica|type=CDS|length=930bp|location=Sequence derived from alignment at scaffold_485:268285..269568+ (Clytia hemisphaerica)
ATGAACTTTTTCACTATCATGGTTAGCTTTCTGGTAGTTAGCAGTTCATT
CAAAGATTGTTACCACTGTCTACCAACAATTGTAACTTCTTCTGATCAGC
GAAAATCATTCTCAACCAATGATGATGGACAactgaaaactgaaaattcc
GACGACGGCAAAAGGACCTCGGGTAGCGCAAGTGGCGGAGAAATTTCTTT
AGACTTACAACGAGACAATATAATACAGATATATTCCTATAAATATGTTC
AAAATCAGCTCCCCTCATCAGATGTAAACCGACATGGAACGGTTTTAGCG
AGAAAGAAATCGGAATTACATTTGGAGAAGGATCATTCGGAAGAAAGTGG
TTCTCAAGAACAAGAAGCAGAGATTATTGAAATTGATGACACTCAGTTTT
CATCGGGCAAAGGCTCAGCAGCTAGTGGGTCAGGTTGGTCGGACTCCTAT
CACATCTCCATTTGAATGAACTTTTTCACTATCATGGTTAGCTTTCTGGT
AGTTAGCAGTTCATTCAAAGATTGTTACCACTGTCTACCAACAATTGTAA
CTTCTTCTGATCAGCGAAAATCATTCTCAACCAATGATGATGGACAactg
aaaactgaaaattccGACGACGGCAAAAGGACCTCGGGTAGCGCAAGTGG
CGGAGAAATTTCTTTAGACTTACAACGAGACAATATAATACAGATATATT
CCTATAAATATGTTCAAAATCAGCTCCCCTCATCAGATGTAAACCGACAT
GGAACGGTTTTAGCGAGAAAGAAATCGGAATTACATTTGGAGAAGGATCA
TTCGGAAGAAAGTGGTTCTCAAGAACAAGAAGCAGAGATTATTGAAATTG
ATGACACTCAGTTTTCATCGGGCAAAGGCTCAGCAGCTAGTGGGTCAGGT
TGGTCGGACTCCTATCACATCTCCATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068494-exon-scaffold_485-1491911889:268285..268353 | TCONS_00068494-exon-scaffold_485-1491911889:268285..268353 | Clytia hemisphaerica | exon |
| TCONS_00068494-exon-scaffold_485-1510915933:268285..268353 | TCONS_00068494-exon-scaffold_485-1510915933:268285..268353 | Clytia hemisphaerica | exon |
| TCONS_00068494-exon-scaffold_485-1575043694:268285..268353 | TCONS_00068494-exon-scaffold_485-1575043694:268285..268353 | Clytia hemisphaerica | exon |
| TCONS_00068494-exon-scaffold_485-1491911889:268411..268514 | TCONS_00068494-exon-scaffold_485-1491911889:268411..268514 | Clytia hemisphaerica | exon |
| TCONS_00068494-exon-scaffold_485-1510915933:268411..268514 | TCONS_00068494-exon-scaffold_485-1510915933:268411..268514 | Clytia hemisphaerica | exon |
| TCONS_00068494-exon-scaffold_485-1575043694:268411..268514 | TCONS_00068494-exon-scaffold_485-1575043694:268411..268514 | Clytia hemisphaerica | exon |
| TCONS_00068494-exon-scaffold_485-1491911889:269015..269568 | TCONS_00068494-exon-scaffold_485-1491911889:269015..269568 | Clytia hemisphaerica | exon |
| TCONS_00068494-exon-scaffold_485-1510915933:269015..269568 | TCONS_00068494-exon-scaffold_485-1510915933:269015..269568 | Clytia hemisphaerica | exon |
| TCONS_00068494-exon-scaffold_485-1575043694:269015..269568 | TCONS_00068494-exon-scaffold_485-1575043694:269015..269568 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_485 | supercontig | scaffold_485:268285..269568 + |
Blast
The following BLAST results are available for this feature:
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