TCONS_00068490 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068490
Unique NameTCONS_00068490
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length549

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068490 ID=TCONS_00068490|Name=TCONS_00068490|organism=Clytia hemisphaerica|type=transcript|length=549bp
tttggccaatttttcccgtgggaaggggtcccaagtgggtctgtgagaag
ggggtgtaaagaTTGCAAACGTTATACTCTGATAAGGTTTTCTCTTATGG
GTAACTACAACCTTctaataaaatgtttttatatttaataGAACTAATAC
AAATTAACCAAGCTAACAACAAAAAACCAGCGGCAAGATGACGGATAATG
ATTTGGTTTGCAACTTCAAGAAATGTCGAAAGCGTTTGACCAATACTGCT
TGGGTGACGTCGTGCTCACACACTTTCTGTGATGAAGATGGTTCACGTGA
ATTCAATAAAAGTTTGGTTTGTCCAGCCTGTGATGCCAAATTGAATGGAA
AACACGACATTGTACGTCATGATCTCAAACCAAGTNCATAtataataata
aagctttacaggtttgcaggccaccgtgaagacacatgggcctctataaa
ccacTCGTACTTTTtaaaatgatctttttgaaatagtaTTTGTCatataa
tgtaatataattactttaatgggataaatttacgcggggattaaatttc
Run BLAST on NCBI

transcript from alignment at scaffold_485:227279..228735+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068490 ID=TCONS_00068490|Name=TCONS_00068490|organism=Clytia hemisphaerica|type=transcript|length=1457bp|location=Sequence derived from alignment at scaffold_485:227279..228735+ (Clytia hemisphaerica)
tttggccaatttttcccgtgggaaggggtcccaagtgggtctgtgagaag
ggggtgtaaagaTTGCAAACGTTATACTCTGATAAGGTTTTCTCTTATGG
GTAACTACAACCTTctaataaaatgtttttatatttaataGAACTAATAC
AAATTAACCAAGCTAACAACAAAAAACCAGCGGCAAGATGACGGATAATG
ATTTGGTTTGCAACTTCAAGAAATGTCGAAAGCGTTTGACCAATACTGCT
TGGGTAAGCATCGCACTTTCACACCAAGGGTGGAGCTGTAAATTGATATC
CTTTCCCTTGTTTTCACCATTTGTGCCGTAAATACCTTTACATCATCACT
CATACATCAATCATACTCTTAcaagtatgatttttacaatCTTCCTGTTG
TTTGATTTTGATCAAGTTTTACATCAAAAGTTTCATCCATATATAGGAGG
GGGAAACCCTTATAATCCGCAGCACATTTCGTGGGACGCAACCGCGtgtg
attggttcgaaagaAAAGTCCTAACCCccgaaatgaatgaaaatttgacg
attttcaaaagtcgaatttaagaaaatgattggtaccattggaaagagca
tgaaattctgagtcTTATACTTACCAACCAAAAAATATGGCCATTTAGAG
TTCGAAATCCTGTAAAATCTGCTACGTTTTAGGctaaatttgacgtcaat
cgtacTCTAACTGACAGAATTTTAAACTCCAGACCAATAGGCTGTATTTC
CTGATATGCTTGAGCACAAGATTTGTTTTAGTACGGACCCTAAGGGTTGG
GCCCTTACTAATAgcgttttatttattttcctgGATGTTCTTTCTATCTC
CAGCTTTTTTAACGTCGCGTCGGAATTGTTTTTCAGGTGACGTCGTGCTC
ACACACTTTCTGTGATGAAGATGGTTCACGTGAATTCAATAAAAGTTTGG
TTTGTCCAGCCTGTAACTATCCCCACAATTCCTTTTTTGTTTGTATATAG
TAAGTGGTCGATGGAGCTTAGCTTTTTCATGGCAAGAAATCAAGACACAC
GTTTTTTTAGgaacatttaaaaattttgagccttcggatgtttttaacat
ttaaagtTTATACATgcctaaaatttttcttaacatgttcttattttcac
catatttttgtccattttccttttctttgaaCTCGTCAATCAAGGGAGTG
GTACACCTTTTTTGgttttcattttccttctgTTCAGGTGATGCCAAATT
GAATGGAAAACACGACATTGTACGTCATGATCTCAAACCAAGTNCATAta
taataataaagctttacaggtttgcaggccaccgtgaagacacatgggcc
tctataaaccacTCGTACTTTTtaaaatgatctttttgaaatagtaTTTG
TCatataatgtaatataattactttaatgggataaatttacgcggggatt
aaatttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042719XLOC_042719Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068490-exon-scaffold_485-1491911889:227279..227531TCONS_00068490-exon-scaffold_485-1491911889:227279..227531Clytia hemisphaericaexon
TCONS_00068490-exon-scaffold_485-1510915933:227279..227531TCONS_00068490-exon-scaffold_485-1510915933:227279..227531Clytia hemisphaericaexon
TCONS_00068490-exon-scaffold_485-1575043694:227279..227531TCONS_00068490-exon-scaffold_485-1575043694:227279..227531Clytia hemisphaericaexon
TCONS_00068490-exon-scaffold_485-1491911889:228165..228240TCONS_00068490-exon-scaffold_485-1491911889:228165..228240Clytia hemisphaericaexon
TCONS_00068490-exon-scaffold_485-1510915933:228165..228240TCONS_00068490-exon-scaffold_485-1510915933:228165..228240Clytia hemisphaericaexon
TCONS_00068490-exon-scaffold_485-1575043694:228165..228240TCONS_00068490-exon-scaffold_485-1575043694:228165..228240Clytia hemisphaericaexon
TCONS_00068490-exon-scaffold_485-1491911889:228516..228735TCONS_00068490-exon-scaffold_485-1491911889:228516..228735Clytia hemisphaericaexon
TCONS_00068490-exon-scaffold_485-1510915933:228516..228735TCONS_00068490-exon-scaffold_485-1510915933:228516..228735Clytia hemisphaericaexon
TCONS_00068490-exon-scaffold_485-1575043694:228516..228735TCONS_00068490-exon-scaffold_485-1575043694:228516..228735Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_485supercontigscaffold_485:227279..228735 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.98822	9.63189	9.79522	11.2053	2.11075	1.77914	1.22089	2.21371	2.65331	3.72917	5.9595	2.60883	1.95434	1.74196	1.48128	1.52606	2.06733	2.76286	2.14027	1.53518	2.24783	2.21443	3.18212	3.0456	23.5753	18.0549	2.57543	2.18866	1.50561	1.35915
Blast
[Close]
BLAST of TCONS_00068490 vs. Swiss-Prot (Human)
Match: CIP1 (E3 ubiquitin-protein ligase CCNB1IP1 OS=Homo sapiens GN=CCNB1IP1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.120e-19
Identity = 36/65 (55.38%), Postives = 52/65 (80.00%), Query Frame = 2 
Query:  194 DNDLVCNFKKCRKRLTNTAWVTSCSHTFCDEDGSREFNKS-LVCPACDAKLNGKHDIVRHDLKPS 385
            ++ L+CN++KCR +L+  AWVT+CSH FCD+ GS EF++S  +CPAC++ L+GK DIVR +L PS
Sbjct:    5 EDMLLCNYRKCRIKLSGYAWVTACSHIFCDQHGSGEFSRSPAICPACNSTLSGKLDIVRTELSPS 69
The following BLAST results are available for this feature:
BLAST of TCONS_00068490 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CIP11.120e-1955.38E3 ubiquitin-protein ligase CCNB1IP1 OS=Homo sapie... [more]
back to top