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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068485 ID=TCONS_00068485|Name=TCONS_00068485|organism=Clytia hemisphaerica|type=transcript|length=1666bp
ACGATGACCAGCGAAAATTTTCTAGAGGTGAAAaggcatcaaattttaag
ggtttttcactgaaagaaaaataaactttaccgttgaaatcttgttaaat
tgtgaaaaaactgcgTGTGGGAAGTTCCAACTCGATCCGGTTTTCcttat
tcttaacttttttcccaCTTCTTCCTGATCTGGAAGTCTGCTCACCCATT
TATTACCCGTTTGGGTGTCAAGTTAATTTCCTGctcgggaaggttcttcc
cattttGGAAGAATCTTCACGATCGAGTTGGTGGCACAGACTGACAGGTC
AATATTAatttgagctgtgatactcatgGTAATCTATTAAAGCTGCTCAC
Gacactttcttactctcttgctatttgtcctatttttatctgattctcat
caTCAGTAGGATGATGAGAAACGTTGTATGAGATTTTTACTATGTCTATA
AAGTGAAAGATTCAAAACGATAAATCTTAGTGGGGGAGGTGTGCCAAGAC
TAAGNTTCATATTACTATGTCTAAGTGAAAGATTTAAAACTATAAATCTT
AGGGAGTGAGGTGTGTGCTAAGACTAAACAGAATCAACAATATAACTAAC
TATTAAATTAATTATTAATTTCAGCACCCGTCGATTCCCTGGCTACGATG
ACGAGTCCAATGAGTTTTCTGCTGAGGTCCACAGAAATCACATTTTAGGT
CAAAATGTTGCTGAGTACATGAGAAATTTAtctgaagaagatgaagaatc
attcaaaaaacaattttctcaaTACATCAAAAATGGAGTCACAGCTGATT
CTATGGAAGGAATATACAAGAAATGCCACGCTGCCATCAGAGCTGACCCT
TCACCGGCCAAGAAAGCTGACAAAAAAGAATTCAAAGGAAAACGATTTGG
CCGCAAGAAAATGTCCCTTGCCCAAAAACGAGACAGTGCCAAGCAAAAGA
AAGAAGCTTTCCGTCGCAAACTCGATGCAGAGGACGAATAGATTTTTCTC
TTGTTGTCAAAAGATGCAATTCTGCAATAAAACTACctcgtttttaattt
ttgccttTATAGTAGGGGGGAATTTGgtcgttttttttttaggtCGCTCG
ATTATTctggtcaaagcacttgttatacattttttggaaagctaaggggt
aggggaatcaaaatttcaatgtttccaatttttttctgtacctaactcga
gatattaacccttgaaaaccgtgtttttcagccagaaacagctgtttcgT
CCAGTTTtagcgctttttgaagctcaatatctcgagttaggtactgaaat
cacctatacttgcaatatatctctaatcataattttttgagagctttcca
aaaatatacaacaggtctcaattttcattaatttttaactctatgatttt
tgcctgagaccgtcatatttgtccgaaaatcacaccaaagtgtccgaaaa
aaattggaaacattgaaATTCGGACTCCTCATCAAgaccagtggtaatag
ggggagaaactatgaacatattttaaATTTACGActcgatggatgtaaaa
tttgtgatttttgtgaaatatttcaagatttccgatattgcaaagtccaa
actaaaatttagaaattttttaaaatgacaatttttatttaacaactcat
tcaaaaagtacgttcg Run BLAST on NCBI protein sequence of TCONS_00068485-protein >TCONS_00068485-protein ID=TCONS_00068485-protein|Name=TCONS_00068485-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
MKNHSKNNFLNTSKMESQLILWKEYTRNATLPSELTLHRPRKLTKKNSKE
NDLAARKCPLPKNETVPSKRKKLSVANSMQRTNRFFSCCQKMQFCNKTTS
FLIFAFIVGGNLVVFFLGRSIILVKALVIHFLES Run BLAST on NCBI transcript from alignment at scaffold_485:177468..180959+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068485 ID=TCONS_00068485|Name=TCONS_00068485|organism=Clytia hemisphaerica|type=transcript|length=3492bp|location=Sequence derived from alignment at scaffold_485:177468..180959+ (Clytia hemisphaerica)
ACGATGACCAGCGAAAATTTTCTAGAGGTGAAAaggcatcaaattttaag
ggtttttcactgaaagaaaaataaactttaccgttgaaatcttgttaaat
tgtgaaaaaactgcgTGTGGGAAGTTCCAACTCGATCCGGTTTTCcttat
tcttaacttttttcccaCTTCTTCCTGATCTGGAAGTCTGCTCACCCATT
TATTACCCGTTTGGGTGTCAAGTTAATTTCCTGctcgggaaggttcttcc
cattttGGAAGAATCTTCACGATCGAGTTGGTGGCACAGACTGACAGGTC
AATATTAatttgagctgtgatactcatgGTAATCTATTAAAGCTGCTCAC
Gacactttcttactctcttgctatttgtcctatttttatctgattctcat
caTCAGTAGGATGATGAGAAACGTTGTATGAGATTTTTACTATGTCTATA
AAGTGAAAGATTCAAAACGATAAATCTTAGTGGGGGAGGTGTGCCAAGAC
TAAGNTTCATATTACTATGTCTAAGTGAAAGATTTAAAACTATAAATCTT
AGGGAGTGAGGTGTGTGCTAAGACTAAACAGAATCAACAATATAACTAAC
TATTAAATTAATTATTAATTTCAGCACCCGTCGATTCCCTGGCTACGATG
ACGAGTCCAATGAGTTTTCTGCTGAGGTCCACAGAAATCACATTTTAGGT
CAAAATGTTGCTGAGTACATGAGAAATTTAtctgaagaagatgaagaatc
attcaaaaaacaattttctcaaTACATCAAAAATGGAGTCACAGCTGATT
CTGTAAGTCAATAAAAAGCTTCCTTAGTTCTTTCTAGCTTTTTTACACAA
ATCCCTTAGTTGTTATAACAATGGCTGTTTTTAATTGTGAAGTACGAATT
TATAAGAGCATCAAAATGAGAAAACCATCAATTTCTGACATGATTTGCTC
AATATATAAGGTGGGACACTCTGAATATTGTCTTATTCTTTTATACTAAT
TGATATTCAAGCTAGGTCAAGTTCTtataataccttaagggaactaattt
tggcagatTTGGCGAAATTAGATGAAATTCGCCAATTGCTCACtagccaa
aataagttcccaccaaaattacattttttgtttccttgcctaaataatcc
ttgaaattcatcaaaataaggcaaaatagaacagatttacgctgtcattt
gccaaaattagttcctgccaaaatttaaaaaattcactattcgtCAAAag
aagttcccgccaaaattttttttggatatttgctgcccgccaaaattagt
tcccttaaggtaaccaACACAAAGAACAAtggaaatttcaagaatattaT
GATTGGATTTTTTATCAAAGGAACAAATGTGTCAAttaagaaaaatcaat
ttctcgTTCTTTTCTTCTAGATGGAAGGAATATACAAGAAATGCCACGCT
GCCATCAGAGCTGACCCTTCACCGGCCAAGAAAGCTGACAAAAAAGAATT
CAAAGGAAAACGGTTAGTAGTTACAACTTTATACGAGCGTTTTTGTTGAG
TATAAAAACTCAAGCAATTCCAAAGATCTACCTGTCGCTAAATTTCTATC
ATTTGTATTTAAGCTTTGATTTTGCCGTATTTTTttggatgagctggagt
ttttgtaaaatactcactaattggtcatttgaagaaAGGGGCCGTCCAGA
TAGTACGTACGTTACGTAcacactaaaatgtcgaaaatcaaGTTCCCCTG
TACCCTTAAGCGTGGTTTTCATCTGGCGATAAGAACGAGATAACCACAGT
GCGCATGATATCAAATCGCATTTTCCCCTTTCACGATAGAAAAACTACGA
ACGGTCCTCACTACAATCTCTCTTCTCTCTTTTTATTGACCTGTGTGTTA
AGTTTCATGATTGACAACTACAATATCTATACAATAtcatcaatttcaac
aaaatgttAGAAAAAAAGAGAGGGAAATCTACTCACTTTAGGTACATTTT
GTCGGCATTCTTTGAAGATTATAAAATTCGAGCTATCGCCACTCTTATcg
cattttttgaaaacaaaaatttttgttttcaaaaaaagcgaTAAGATAGG
GGGTATCGCAAAAAATGCGataaaaaaaatgcaataacaaaaaaattgca
TGTTTTCACTGGCGATAAGAAAACATCCTATCGCATTTTATCATGCGCAC
TGTGGTTATCTCGTTCTTATCGCCAGATGAAAACCACGCTTTACTGCGTA
CGTACTACGTGGATCGTCCCTGATAGTGacgacgcgttctttagaaagtG
TACTTGTCTTGTAAAAGGTTTTCTAGgggaataaaaggagcttattttag
gcagtgTCTTCATGTTGAGTCAGATAAATTAAAGCTACTTTTTACGTAAC
GATATCCTGCGAACAagtgaaagatcgaaagttgtttcgatatgtgacct
cacattctattgcttttgtttttttatttaatgtattttcattttttcaa
aaccttgttCTAATCTTGTCGCCCTTGTTTTTACTTcatcagcatcatca
gaccttttaatcaaaacaaaacctttaacgacGACCCAAATCAaacagct
tgtaaaaactccagtgtgtcccattttcttctttgaACCATTTTTGCTAG
TTTTTGGTCTCATAGTTCTCTCTCGTTGGAATTTAAACCaagaaaaattt
cattccaTTTATCTTTTTAGATTTGGCCGCAAGAAAATGTCCCTTGCCCA
AAAACGAGACAGTGCCAAGCAAAAGAAAGAAGCTTTCCGTCGCAAACTCG
ATGCAGAGGACGAATAGATTTTTCTCTTGTTGTCAAAAGATGCAATTCTG
CAATAAAACTACctcgtttttaatttttgccttTATAGTAGGGGGGAATT
TGgtcgttttttttttaggtCGCTCGATTATTctggtcaaagcacttgtt
atacattttttggaaagctaaggggtaggggaatcaaaatttcaatgttt
ccaatttttttctgtacctaactcgagatattaacccttgaaaaccgtgt
ttttcagccagaaacagctgtttcgTCCAGTTTtagcgctttttgaagct
caatatctcgagttaggtactgaaatcacctatacttgcaatatatctct
aatcataattttttgagagctttccaaaaatatacaacaggtctcaattt
tcattaatttttaactctatgatttttgcctgagaccgtcatatttgtcc
gaaaatcacaccaaagtgtccgaaaaaaattggaaacattgaaATTCGGA
CTCCTCATCAAgaccagtggtaatagggggagaaactatgaacatatttt
aaATTTACGActcgatggatgtaaaatttgtgatttttgtgaaatatttc
aagatttccgatattgcaaagtccaaactaaaatttagaaattttttaaa
atgacaatttttatttaacaactcattcaaaaagtacgttcg Coding sequence (CDS) from alignment at scaffold_485:177468..180959+ >TCONS_00068485 ID=TCONS_00068485|Name=TCONS_00068485|organism=Clytia hemisphaerica|type=CDS|length=1215bp|location=Sequence derived from alignment at scaffold_485:177468..180959+ (Clytia hemisphaerica)
atgaagaatcattcaaaaaacaattttctcaaTACATCAAAAATGGAGTC
ACAGCTGATTCTATGGAAGGAATATACAAGAAATGCCACGCTGCCATCAG
AGCTGACCCTTCACCGGCCAAGAAAGCTGACAAAAAAGAATTCAAAGGAA
AACGATTTGGCCGCAAGAAAATGTCCCTTGCCCAAAAACGAGACAGTGCC
AAGCAAAAGAAAGAAGCTTTCCGTCGCAAACTCGATGCAGAGGACGAATA
GATTTTTCTCTTGTTGTCAAAAGATGCAATTCTGCAATAAAACTACctcg
tttttaatttttgccttTATAGTAGGGGGGAATTTGgtcgtttttttttt
aggtCGCTCGATTATTctggtcaaagcacttgttatacattttttggaaa
gctaaatgaagaatcattcaaaaaacaattttctcaaTACATCAAAAATG
GAGTCACAGCTGATTCTATGGAAGGAATATACAAGAAATGCCACGCTGCC
ATCAGAGCTGACCCTTCACCGGCCAAGAAAGCTGACAAAAAAGAATTCAA
AGGAAAACGATTTGGCCGCAAGAAAATGTCCCTTGCCCAAAAACGAGACA
GTGCCAAGCAAAAGAAAGAAGCTTTCCGTCGCAAACTCGATGCAGAGGAC
GAATAGATTTTTCTCTTGTTGTCAAAAGATGCAATTCTGCAATAAAACTA
CctcgtttttaatttttgccttTATAGTAGGGGGGAATTTGgtcgttttt
tttttaggtCGCTCGATTATTctggtcaaagcacttgttatacatttttt
ggaaagctaaatgaagaatcattcaaaaaacaattttctcaaTACATCAA
AAATGGAGTCACAGCTGATTCTATGGAAGGAATATACAAGAAATGCCACG
CTGCCATCAGAGCTGACCCTTCACCGGCCAAGAAAGCTGACAAAAAAGAA
TTCAAAGGAAAACGATTTGGCCGCAAGAAAATGTCCCTTGCCCAAAAACG
AGACAGTGCCAAGCAAAAGAAAGAAGCTTTCCGTCGCAAACTCGATGCAG
AGGACGAATAGATTTTTCTCTTGTTGTCAAAAGATGCAATTCTGCAATAA
AACTACctcgtttttaatttttgccttTATAGTAGGGGGGAATTTGgtcg
ttttttttttaggtCGCTCGATTATTctggtcaaagcacttgttatacat
tttttggaaagctaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068485-exon-scaffold_485-1491911889:177468..178269 | TCONS_00068485-exon-scaffold_485-1491911889:177468..178269 | Clytia hemisphaerica | exon |
| TCONS_00068485-exon-scaffold_485-1510915933:177468..178269 | TCONS_00068485-exon-scaffold_485-1510915933:177468..178269 | Clytia hemisphaerica | exon |
| TCONS_00068485-exon-scaffold_485-1575043694:177468..178269 | TCONS_00068485-exon-scaffold_485-1575043694:177468..178269 | Clytia hemisphaerica | exon |
| TCONS_00068485-exon-scaffold_485-1491911889:178888..178979 | TCONS_00068485-exon-scaffold_485-1491911889:178888..178979 | Clytia hemisphaerica | exon |
| TCONS_00068485-exon-scaffold_485-1510915933:178888..178979 | TCONS_00068485-exon-scaffold_485-1510915933:178888..178979 | Clytia hemisphaerica | exon |
| TCONS_00068485-exon-scaffold_485-1575043694:178888..178979 | TCONS_00068485-exon-scaffold_485-1575043694:178888..178979 | Clytia hemisphaerica | exon |
| TCONS_00068485-exon-scaffold_485-1491911889:180188..180959 | TCONS_00068485-exon-scaffold_485-1491911889:180188..180959 | Clytia hemisphaerica | exon |
| TCONS_00068485-exon-scaffold_485-1510915933:180188..180959 | TCONS_00068485-exon-scaffold_485-1510915933:180188..180959 | Clytia hemisphaerica | exon |
| TCONS_00068485-exon-scaffold_485-1575043694:180188..180959 | TCONS_00068485-exon-scaffold_485-1575043694:180188..180959 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_485 | supercontig | scaffold_485:177468..180959 + |
Blast
BLAST of TCONS_00068485 vs. Swiss-Prot (Human)
Match: RL5 (60S ribosomal protein L5 OS=Homo sapiens GN=RPL5 PE=1 SV=3) HSP 1 Score: 130.183 bits (326), Expect = 1.300e-33 Identity = 78/120 (65.00%), Postives = 91/120 (75.83%), Query Frame = 2
Query: 608 LIINFSTRRFPGYDDESNEFSAEVHRNHILGQNVAEYMRNLSEEDEESFKKQFSQYIKNGVTADSMEGIYKKCHAAIRXXXXXXXXXXXXXXXXXXXXXXXMSLAQKRDSAKQKKEAFRR 967
L I ST+RFPGYD ES EF+AEVHR HI+GQNVA+YMR L EEDE+++KKQFSQYIKN VT D ME +YKK HAAIR + +K KKE K KR+ R KMSLAQK+D QKK +F R
Sbjct: 171 LSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIR-ENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLR 289
The following BLAST results are available for this feature:
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