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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068477 ID=TCONS_00068477|Name=TCONS_00068477|organism=Clytia hemisphaerica|type=transcript|length=1561bp
CATTGGAATTTGCCAGAGCCTGTTTCCATATTCTTTGGACGAGAAAATTT
GATTGAATCTATTCACTTGAAACTTCAACAAAATCAAGCAATTGCTTTGA
GTGAAATGGGAGGTGTGGGGAAAACACAAACTGCTGCAAAGTTCGTTCAA
ACGCACAAGGATGAATATCAGAAGATATTTTGGATTTCTGCTGTCAGCCT
CAAGAAATCTTTGAACGAGATTTTGTGTGCATTTGGTTGTAAACAACTAA
TTCCTGATGAACCTTCAATGGAAACTCTTGCTTTCATTTTTCTCTCTAAG
ATTTGTGAAGGCTCCAAAAGATCGCTGGTTGTATTGGATGACGTCACTGA
TGTTACAAAAGATATCACTTTATTCATTCGaaatgtgaaagaaaaaatca
acttaTTGTTGACATCTCAATTGAGGGATTGGGAAGATTATGGTTTGATT
CAAATTGCGGTTCCATGTTTCCAAGAACAAGAATCCATTGGCTTCTTACA
GAATGAACTTTCTTCAGCCAGCCAACATTAAAtctttattttagcgaatc
gtTTACAATCATTACCTTTAGCCCTTCACCAAGCCATTTGTTACATCAAA
AAACATAAAGTTCCTCTACACAAATACATCGAACAATTTAAAGTTTGCAG
AGAAAGTGTTTTAGGAATGAAAATCAATTCGTTTACTGAATATGACAAGA
CATTGTTGACAGTTTGGGATATGGCTTTTGCGAAGATTCGGGTCGAATCA
AAGAATGCTCTTTTGGTCTTAGGAATGATGGCTTTCATGGACaatcgaaa
aatcaataaaaagacattcagttattttgataaaatagatGAATTTGAAT
TAAATGAAATCATCAATCTGCTTTGTCAATATTCATTGGTCAACGAGCGG
AATGAATGTTTAGAAATTCACAGTCTTGTGCAAAAAGTTATCCGATATCG
TATTGAACAGAAACAATTTGTTGAGGATGAAAGTCCGTTGACACTTCTtg
aagatgttcttttaaaaatcgagGTTTCTGTTACAGATTTGGTTATAAAT
GCTGACTGTGAGGATTTATGGCACATTCATATTTTTCGTTTGATCATGAG
TGGTGCAATCAAAACTGTCAACTTTCATGTTTCTCTGTTGCTGAATATCG
CCACAGGCAGAATGGAGTTGGAGAACTTATACCAAATTTCTGAacttctt
tcaaaagttttcttaaaacaataTAGGTTGTTTCGAGATGTGGAAACTTT
TCACATGTTGTTGCTTGTTCATGATCGTTTCATAAACGCGTCAATTCAAT
TAGGTTTACTTAATTTGAATGAGATTTTTGCTTTCGAAGAAGAGTTTTCC
ACAGAACTTGAAGAACATTCTGAAGAAGTTTACCGTTGGAAGCTACTACA
AGCTCAGGCATATAATAGACATGGAAGAGTGTCGTTATGCAATGATATTG
TTCGAAATTTATTCAATGAACTAGTCAAAAAGAAAGGATTTGACTATATT
AAATTAATATTGGCGAGTTTTTTCACGGTAAGGGATGTCGAAGTTTTGTT
GAATACCGTTG Run BLAST on NCBI transcript from alignment at scaffold_485:117311..118871+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068477 ID=TCONS_00068477|Name=TCONS_00068477|organism=Clytia hemisphaerica|type=transcript|length=1561bp|location=Sequence derived from alignment at scaffold_485:117311..118871+ (Clytia hemisphaerica)
CATTGGAATTTGCCAGAGCCTGTTTCCATATTCTTTGGACGAGAAAATTT
GATTGAATCTATTCACTTGAAACTTCAACAAAATCAAGCAATTGCTTTGA
GTGAAATGGGAGGTGTGGGGAAAACACAAACTGCTGCAAAGTTCGTTCAA
ACGCACAAGGATGAATATCAGAAGATATTTTGGATTTCTGCTGTCAGCCT
CAAGAAATCTTTGAACGAGATTTTGTGTGCATTTGGTTGTAAACAACTAA
TTCCTGATGAACCTTCAATGGAAACTCTTGCTTTCATTTTTCTCTCTAAG
ATTTGTGAAGGCTCCAAAAGATCGCTGGTTGTATTGGATGACGTCACTGA
TGTTACAAAAGATATCACTTTATTCATTCGaaatgtgaaagaaaaaatca
acttaTTGTTGACATCTCAATTGAGGGATTGGGAAGATTATGGTTTGATT
CAAATTGCGGTTCCATGTTTCCAAGAACAAGAATCCATTGGCTTCTTACA
GAATGAACTTTCTTCAGCCAGCCAACATTAAAtctttattttagcgaatc
gtTTACAATCATTACCTTTAGCCCTTCACCAAGCCATTTGTTACATCAAA
AAACATAAAGTTCCTCTACACAAATACATCGAACAATTTAAAGTTTGCAG
AGAAAGTGTTTTAGGAATGAAAATCAATTCGTTTACTGAATATGACAAGA
CATTGTTGACAGTTTGGGATATGGCTTTTGCGAAGATTCGGGTCGAATCA
AAGAATGCTCTTTTGGTCTTAGGAATGATGGCTTTCATGGACaatcgaaa
aatcaataaaaagacattcagttattttgataaaatagatGAATTTGAAT
TAAATGAAATCATCAATCTGCTTTGTCAATATTCATTGGTCAACGAGCGG
AATGAATGTTTAGAAATTCACAGTCTTGTGCAAAAAGTTATCCGATATCG
TATTGAACAGAAACAATTTGTTGAGGATGAAAGTCCGTTGACACTTCTtg
aagatgttcttttaaaaatcgagGTTTCTGTTACAGATTTGGTTATAAAT
GCTGACTGTGAGGATTTATGGCACATTCATATTTTTCGTTTGATCATGAG
TGGTGCAATCAAAACTGTCAACTTTCATGTTTCTCTGTTGCTGAATATCG
CCACAGGCAGAATGGAGTTGGAGAACTTATACCAAATTTCTGAacttctt
tcaaaagttttcttaaaacaataTAGGTTGTTTCGAGATGTGGAAACTTT
TCACATGTTGTTGCTTGTTCATGATCGTTTCATAAACGCGTCAATTCAAT
TAGGTTTACTTAATTTGAATGAGATTTTTGCTTTCGAAGAAGAGTTTTCC
ACAGAACTTGAAGAACATTCTGAAGAAGTTTACCGTTGGAAGCTACTACA
AGCTCAGGCATATAATAGACATGGAAGAGTGTCGTTATGCAATGATATTG
TTCGAAATTTATTCAATGAACTAGTCAAAAAGAAAGGATTTGACTATATT
AAATTAATATTGGCGAGTTTTTTCACGGTAAGGGATGTCGAAGTTTTGTT
GAATACCGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068477-exon-scaffold_485-1491911889:117311..118871 | TCONS_00068477-exon-scaffold_485-1491911889:117311..118871 | Clytia hemisphaerica | exon |
| TCONS_00068477-exon-scaffold_485-1510915933:117311..118871 | TCONS_00068477-exon-scaffold_485-1510915933:117311..118871 | Clytia hemisphaerica | exon |
| TCONS_00068477-exon-scaffold_485-1575043694:117311..118871 | TCONS_00068477-exon-scaffold_485-1575043694:117311..118871 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_485 | supercontig | scaffold_485:117311..118871 + |
Blast
The following BLAST results are available for this feature:
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