TCONS_00068476 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068476
Unique NameTCONS_00068476
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length617

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068476 ID=TCONS_00068476|Name=TCONS_00068476|organism=Clytia hemisphaerica|type=transcript|length=617bp
CATTGGTCAACGAGCGAAATGATTGTTTAGAAATTCACAGTCTTGTGCAA
AAAGTTATCCGATATCGTATTGAACAAAAACAGTTTGTTGAGGATGAAAG
TCCGTTGACACTTCTTGAAGGTGTGCTTTTGAAAATTGAGGCCTCTGTTG
AAGGTTTGGTTATAAATGCTGACCAAGAGGATTTATGGTACATTCATGCT
TTTTGTTTGATCATGAGTGGTGCACTCAAAACTATCAACTTTGATGCTTC
TCGGCTGTTTAATGTCGCCATAGGCAGAATGGAGATGGAGAACTTATACC
AATTTTCTGAACttctttcaaaaagttttgttcaAACAATATAGGTTGTC
TCGAGATGTGGAAACTTTTCACACGTTGTTGCTTGTTCATCATCGTTTCA
TACACGCGTCAATTCAAGTAGGTTTCCTTGATTTGaatcaaatttttagt
ttcgAAAAAGAGTTTTCCTCAGAGCTTGAAGAACATTCTGAAGAAGTTTA
CAGTTAGCTAGAGCAAGCTGAGGCATATAATATACATGGACGAGTGTCGT
TATGCAAAGATATCGTTCAAAATGTATTTAATGAACTGGTCAAGAAGAAA
GGATTTGATGACATTAA
Run BLAST on NCBI

transcript from alignment at scaffold_485:116142..116758+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068476 ID=TCONS_00068476|Name=TCONS_00068476|organism=Clytia hemisphaerica|type=transcript|length=617bp|location=Sequence derived from alignment at scaffold_485:116142..116758+ (Clytia hemisphaerica)
CATTGGTCAACGAGCGAAATGATTGTTTAGAAATTCACAGTCTTGTGCAA
AAAGTTATCCGATATCGTATTGAACAAAAACAGTTTGTTGAGGATGAAAG
TCCGTTGACACTTCTTGAAGGTGTGCTTTTGAAAATTGAGGCCTCTGTTG
AAGGTTTGGTTATAAATGCTGACCAAGAGGATTTATGGTACATTCATGCT
TTTTGTTTGATCATGAGTGGTGCACTCAAAACTATCAACTTTGATGCTTC
TCGGCTGTTTAATGTCGCCATAGGCAGAATGGAGATGGAGAACTTATACC
AATTTTCTGAACttctttcaaaaagttttgttcaAACAATATAGGTTGTC
TCGAGATGTGGAAACTTTTCACACGTTGTTGCTTGTTCATCATCGTTTCA
TACACGCGTCAATTCAAGTAGGTTTCCTTGATTTGaatcaaatttttagt
ttcgAAAAAGAGTTTTCCTCAGAGCTTGAAGAACATTCTGAAGAAGTTTA
CAGTTAGCTAGAGCAAGCTGAGGCATATAATATACATGGACGAGTGTCGT
TATGCAAAGATATCGTTCAAAATGTATTTAATGAACTGGTCAAGAAGAAA
GGATTTGATGACATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042709XLOC_042709Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068476-exon-scaffold_485-1491911889:116142..116758TCONS_00068476-exon-scaffold_485-1491911889:116142..116758Clytia hemisphaericaexon
TCONS_00068476-exon-scaffold_485-1510915933:116142..116758TCONS_00068476-exon-scaffold_485-1510915933:116142..116758Clytia hemisphaericaexon
TCONS_00068476-exon-scaffold_485-1575043694:116142..116758TCONS_00068476-exon-scaffold_485-1575043694:116142..116758Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_485supercontigscaffold_485:116142..116758 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.227554	0.112544	0	0	0.146025	0	0	0	0	0	0.100147	0.141277	0.245582	0.227906	0.932755	1.04036	0.228014	0.596243	0	0.32523	0.633106	0.803011	0.473887	0.108959	1.04632	0	0.718509	0.0465084	0.49031	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068476 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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