|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068447 ID=TCONS_00068447|Name=TCONS_00068447|organism=Clytia hemisphaerica|type=transcript|length=2432bp
AACAAAGACACATTGGAATTTACCAGAGCCTGTTTCCATCTTCTTTGGAC
GAGAAAGAATGATTGAATCCATTCACTTGAAACTTCAACAAAATCAAGCG
GTTGCTTTGAGTGAAATGGGAGGTGTGGGGAAAACACAAACTGCTGCAAA
GTTCGTTCAAATACACAAGGATGAATATCGGAAGATATTTTGGATTTCTG
CTGTCAGCCTCAAGAGATCTCTGAACGAGATTTTGTGCGCATTTGGTTGT
AAACAACTAATTCCTGATGAACCTTCGATGGAAACTCTTGCTTTCATTTT
CCTCTCTAAGATTTGTGAAGGCTCCAAAAAATCGCTGGTTGTATTGGATG
ACGTCACCGAGGTCACAAAAGACGTCACTTCATTCATTCGaaatgtgaaa
gaaaaaatcagcTTATTGTTGACATCTCAATTGAGGGATTGGGAAGATTA
TGGTTTGATTCAAATTGCTGTTCCATGTTTCCAAGAACAAGAATCCATTG
GGTTCTTACAGAATGAACTTTCTTCAGCAAGCCAACAAGAAATCTCCATT
TTAGCGAATCGTTTACAATCATTACCTTTAGCCCTTCACCAAGCCATTTG
TTACATCAAAAAACATAAAGTTCCTCTACACAAATACATTGAACAATTTG
AAGCAtgcagaaaaagtgttttgggAATGAAAATTAATTCCTTTACTGAA
TATGACAAAACATTGTTGACAGTTTGGGATATGGCTTTTGCGAAGATTCG
GGTCGAATCAAATAATGCTCTTTTGATCTTGGGAATGATGGCTTTCATGG
ACAAtcgaaaaatcaacaaaaagacATTCAGCTATTTTGATAAAGTTGAC
GAATTTGAATTAAATGAAATAATCAATCTTCTTTGTCAATATTCATTGGT
CAACGAGCGGAACGAATGTTTAGAAATTCACAGTCTTGTGCAAAAAGTTA
TCCGATATCGTATTGAACAAAAACAATTTGTTGAGGATGAAAGTCCGTTG
ACACTGCTTGAAGTTGTTCTTTTGAAAATCGAGGTTTCTATTAAAGATTT
GGAATTAAATGCTGACTATGAGGATTTATGGTACATTCATGTTTTTCGTA
TGATCATGAGTGGTGCATTCAAAACTATCAACTTTGATGTTTCCCGGGTG
TTGAATATCGCTGTAGGCAGACTGGAGATGGAGAACTTATACCAACTTTC
TGAacttctttcaaaagttttgttaAAACAATATAGGTTGTTTCGAGATG
TGGAAACTTTTCACACGTTGTTGGTTGTTCATCGTTGTTTCATAGGCGCG
TCAAGTCAATTAGGTTTACTTAATTTGAATGagatttttgcttttgaagA
AGAGTTTTCCTCAGAGCTTGAAGAAAATCATATAGAAGTTTACTGGTGGA
AGCTACAGGAAGCTGAGACATATAATGTACATGGAAGAATGTCGTTATGC
AAAGATATCGTTCGAAATTTATTCAATGAACTGGTCATAAAGAAAGGATT
TGATAATATTAAATTAAGATTGGCGAGGTTTTTTACTGTAAAGGAGGTTG
AAGTTTTGTTGAATTCCGTTGACACAAATAATCTCAGTGACATGAACTTT
CTGCTGTATTATGATACAAAATGTTCTTTATACATCATGAACGGTTGCTT
TGATTTGGCTGAACAAGTCATGAAGAATTGGAAAGAACATTTACACAGAA
AACAATATTCTCGATCGTCTCAGTTTAACTTCCCAAAAAGGAATTGcttt
ttactttataagaaaggAAGTTACAACGAATCACTACTTGCTTGCGATGA
ACTTAAACGAGACATTGTTTTTACTGATGCAAATGTCTTTATTTTGGAAG
CCttgattttgatcaaattaGGAAAGTTCAACGAAGCAGAAGTGTTACTT
GATGGCTTTAACCTACGTAATAATGGAATTATCATTCAAATTAGTTCATA
CCTGAAATTTCAAAAGCACGACTTTGAGGCAGTAGTAAAGCTCCTCGCAA
ATGTGGAAAATGAGCCTTtgtcaaatcttttgtttttggtAAAGGAATAT
GCGAAACTGCATCGACAGCTCGGAAATAATAAATCGAGAGAATTGGTTGA
ACGATGTTTACAAATGAACAAAATTGTAAATGAGTTATTTCAAGTACAAT
TGGATTcgattaatttttgaaatgctATTTTATCGAATTATGATTAGAAT
CAGATCTTACATACTGGTTTCAAGTAGCTACAATGTAATTGTTGTATTGA
CTTGGCCTGTCAAATCTTAACTGTGTAGCTTTTTTTGCTTTAGAAGTAGT
GTTTTTTCCATTACGGATATttatattttcccaaaaaatcatACTAAAAT
AAGGCATTTTTAGGCAATCTTTCCAAAGAGAATTTATTGCGATTTCCACA
AGTTACCCTTAAGTGGAATAATTTTCACCTGC Run BLAST on NCBI transcript from alignment at scaffold_485:34470..36901+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068447 ID=TCONS_00068447|Name=TCONS_00068447|organism=Clytia hemisphaerica|type=transcript|length=2432bp|location=Sequence derived from alignment at scaffold_485:34470..36901+ (Clytia hemisphaerica)
AACAAAGACACATTGGAATTTACCAGAGCCTGTTTCCATCTTCTTTGGAC
GAGAAAGAATGATTGAATCCATTCACTTGAAACTTCAACAAAATCAAGCG
GTTGCTTTGAGTGAAATGGGAGGTGTGGGGAAAACACAAACTGCTGCAAA
GTTCGTTCAAATACACAAGGATGAATATCGGAAGATATTTTGGATTTCTG
CTGTCAGCCTCAAGAGATCTCTGAACGAGATTTTGTGCGCATTTGGTTGT
AAACAACTAATTCCTGATGAACCTTCGATGGAAACTCTTGCTTTCATTTT
CCTCTCTAAGATTTGTGAAGGCTCCAAAAAATCGCTGGTTGTATTGGATG
ACGTCACCGAGGTCACAAAAGACGTCACTTCATTCATTCGaaatgtgaaa
gaaaaaatcagcTTATTGTTGACATCTCAATTGAGGGATTGGGAAGATTA
TGGTTTGATTCAAATTGCTGTTCCATGTTTCCAAGAACAAGAATCCATTG
GGTTCTTACAGAATGAACTTTCTTCAGCAAGCCAACAAGAAATCTCCATT
TTAGCGAATCGTTTACAATCATTACCTTTAGCCCTTCACCAAGCCATTTG
TTACATCAAAAAACATAAAGTTCCTCTACACAAATACATTGAACAATTTG
AAGCAtgcagaaaaagtgttttgggAATGAAAATTAATTCCTTTACTGAA
TATGACAAAACATTGTTGACAGTTTGGGATATGGCTTTTGCGAAGATTCG
GGTCGAATCAAATAATGCTCTTTTGATCTTGGGAATGATGGCTTTCATGG
ACAAtcgaaaaatcaacaaaaagacATTCAGCTATTTTGATAAAGTTGAC
GAATTTGAATTAAATGAAATAATCAATCTTCTTTGTCAATATTCATTGGT
CAACGAGCGGAACGAATGTTTAGAAATTCACAGTCTTGTGCAAAAAGTTA
TCCGATATCGTATTGAACAAAAACAATTTGTTGAGGATGAAAGTCCGTTG
ACACTGCTTGAAGTTGTTCTTTTGAAAATCGAGGTTTCTATTAAAGATTT
GGAATTAAATGCTGACTATGAGGATTTATGGTACATTCATGTTTTTCGTA
TGATCATGAGTGGTGCATTCAAAACTATCAACTTTGATGTTTCCCGGGTG
TTGAATATCGCTGTAGGCAGACTGGAGATGGAGAACTTATACCAACTTTC
TGAacttctttcaaaagttttgttaAAACAATATAGGTTGTTTCGAGATG
TGGAAACTTTTCACACGTTGTTGGTTGTTCATCGTTGTTTCATAGGCGCG
TCAAGTCAATTAGGTTTACTTAATTTGAATGagatttttgcttttgaagA
AGAGTTTTCCTCAGAGCTTGAAGAAAATCATATAGAAGTTTACTGGTGGA
AGCTACAGGAAGCTGAGACATATAATGTACATGGAAGAATGTCGTTATGC
AAAGATATCGTTCGAAATTTATTCAATGAACTGGTCATAAAGAAAGGATT
TGATAATATTAAATTAAGATTGGCGAGGTTTTTTACTGTAAAGGAGGTTG
AAGTTTTGTTGAATTCCGTTGACACAAATAATCTCAGTGACATGAACTTT
CTGCTGTATTATGATACAAAATGTTCTTTATACATCATGAACGGTTGCTT
TGATTTGGCTGAACAAGTCATGAAGAATTGGAAAGAACATTTACACAGAA
AACAATATTCTCGATCGTCTCAGTTTAACTTCCCAAAAAGGAATTGcttt
ttactttataagaaaggAAGTTACAACGAATCACTACTTGCTTGCGATGA
ACTTAAACGAGACATTGTTTTTACTGATGCAAATGTCTTTATTTTGGAAG
CCttgattttgatcaaattaGGAAAGTTCAACGAAGCAGAAGTGTTACTT
GATGGCTTTAACCTACGTAATAATGGAATTATCATTCAAATTAGTTCATA
CCTGAAATTTCAAAAGCACGACTTTGAGGCAGTAGTAAAGCTCCTCGCAA
ATGTGGAAAATGAGCCTTtgtcaaatcttttgtttttggtAAAGGAATAT
GCGAAACTGCATCGACAGCTCGGAAATAATAAATCGAGAGAATTGGTTGA
ACGATGTTTACAAATGAACAAAATTGTAAATGAGTTATTTCAAGTACAAT
TGGATTcgattaatttttgaaatgctATTTTATCGAATTATGATTAGAAT
CAGATCTTACATACTGGTTTCAAGTAGCTACAATGTAATTGTTGTATTGA
CTTGGCCTGTCAAATCTTAACTGTGTAGCTTTTTTTGCTTTAGAAGTAGT
GTTTTTTCCATTACGGATATttatattttcccaaaaaatcatACTAAAAT
AAGGCATTTTTAGGCAATCTTTCCAAAGAGAATTTATTGCGATTTCCACA
AGTTACCCTTAAGTGGAATAATTTTCACCTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068447-exon-scaffold_485-1491911889:34470..36901 | TCONS_00068447-exon-scaffold_485-1491911889:34470..36901 | Clytia hemisphaerica | exon |
| TCONS_00068447-exon-scaffold_485-1510915933:34470..36901 | TCONS_00068447-exon-scaffold_485-1510915933:34470..36901 | Clytia hemisphaerica | exon |
| TCONS_00068447-exon-scaffold_485-1575043694:34470..36901 | TCONS_00068447-exon-scaffold_485-1575043694:34470..36901 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_485 | supercontig | scaffold_485:34470..36901 + |
Blast
The following BLAST results are available for this feature:
|
