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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068441 ID=TCONS_00068441|Name=TCONS_00068441|organism=Clytia hemisphaerica|type=transcript|length=4134bp
agtaagAATAGGGTTAAACCTGAATTTATTCAAAGAAACATTATATGTTT
TGTATTCCTTCTAGATACAACAAAGACACATTGGAATTTACCAGAGCCTG
TTTCCATCTTCTTTGGACGAGAAAATTTGATTGAATCCATTCACttgaaa
attcaacaaaatgaaGCAATTGCTTTGAGTGAAATGGGAGGTGTGGGAAA
AACACAAATTGCTGCAAAGTTCGTTCAAATGCACAAGGATGAATATCAGA
AGATATTTTGGATTTCTGCTGTCAGCCTCAAAAGATCTTTGAGCGAGATT
TTGTGTGCATTTGGTTGTAAACAACTAATACCTGATGAACCTTCGATGGA
AACTCTGACTTTCATTTTCCTCTCTAAGATTTGTGAAGGCTCCAAAAAAT
CGCTGGTTGTATTGGATGACGTCACTGAGGTCACAAAAGACGTCACTTCA
TTTATTCgaaatatgaaagaaaaaatcagcTTATTGTTGACATCTCAATT
GAAAGATTGGGAAGATTATGGCTTGATTCAAATTGCTGTTCCATGTTTCC
AAGAACAAGAATCCATTGGCTTCTTACAGAATGAACTTTCTTCAGCCAGC
CAACATGAAATCTCCATTTTAGCGAATCGTTTACAATCATTACCTTTAGC
CCTTCACCAAGCCATTTGTTacatcaaaaaacataaaattcctCTACACA
AATACATCGAACAATTTGAAGTTTGCAGAGAAAGTGTTTTGGGAATGAAA
ATCAATTCTTTTACTGAATATGACAAAACATTGTTGACAGTTTGGGATTT
GGCTTTTGAGAAAATTCGGGTCGAATCAAAGAATGCTCTTTTGTTCTTGG
GAATGATGGCTTTCATGGACaatcgaaaaatcaataaaaagacaTTCAGC
TATTTTGATAAAGTTGACGAATTTGAATTAAATGAAATCATAAATCTGCT
TTGTCAATATTCATTGGTTGGCGAGCGGAACGAATGTTTAGAAATTCACA
GTCTCGTGCAAAAAGTTATCCGATATCGTATTGAACAAAAACAATTTGTT
GAGGATGAATGGCCGTTGACACTTCTTGAAGATGTTCTTTTGAAAATCGA
GTCTTCTGTTGAAGATTTGGTTGCAAATGATGACTACGAGGATTTATGGT
ACATTCATGTTTTTCGCTTGATCATGAGTGGTGCACTAAAAACTATCAAC
TTTGATGTTAACCAGGTGTTAAATATCGCCGCAGGCAGAATGGAGATGGA
AAACTTATACCTACTTGCTGAACTTCTTTCAAAAGCCTTGTTAAAACAAT
ATAGGTTGTTTCGAGATGTGAAAACTTTTTATACGTTGTTGCTTGTTCAT
CATCGTTTCATAAACGCGTCTATTAAATTAGGTTTACTTAATGTGAATGA
AATTATTGCTTTTGAAAAAGAGTTTTCCACAGAACTTGAAGAACATTCTG
TAGAAGTTTACCAGTGGAAGCTAAAGCAAGCTGAGTTATATAATATACAT
GGAAGAGCGTTGTTATGCAATAATATCGTTCGAAATTTATTCAATGAACT
GGTCAAGAAGAAAGGATTTGATGATATTAAATTAAGATTGGCGAGTTTTT
TTACTGTAATTGATTTTGAAGCTTTGTTGAATTCCGTTGACACAAATAAT
CTCAGTGACACGGACTTTCTGATGTATTATCATGCGAAATGTTCTTTATA
CATCAAGAAGGGTTGCTTTGATTTGGCTGAACAAACCATGAAGAATTGGA
AAGAACACATACACAGAAAACAATTTTCTCGATTATGGCActttaatttc
acaaaaaagaatTGCTTTTTACTTTACAAGAAAGGAGATTATAACGAAGC
ACTACTTGCTTGCGATGAACTTAAACGAGACATTGTTTTTACTGATGCAG
ATGTTTTAATTTTGGAAGCATTGGTTTTGATCAAATTAGGAAAGTTCGAC
GATGCAGAAGTGTTACTTGATGACTTTAATCAACGCAATAATGGAATTAT
CATTAAAATCAGTTCATACCTGAAATTTCGAAAGCACGACTTTGAGGCAG
TAGTAAAGCTCCTCTCTGATGCGGAAGATGAGCGTTtgtcaaatcttttg
tttttggtAAATGAATATGCGAAACTGCATCGACAACTCGAAAATAATAA
GTCGAGAGAAATAGTTGAACGATGTTTGCAAATGAAAAAAGTTGTAAATG
AATTATTTCAAGTACAATTGGATATGATTTATCTTTGAAATCTTATTATA
TGGAATTATGATTAGAATTGGATCTTTGGGAATTACTCCAACTTTTAAGT
GCAGGCTATACTGATAAGTTTTTCAAGTGCCAGCAATGTAATTGTTGCAT
TGATTTGGCCTGTATAATCAGAAgtagtgtttttctttttaattatgaaa
ataattGAGGAGttggtttcagggggtacctgatTCCGCCATTCGGTCAA
GTTTTTGTCAAATTTCCGTCACACCGTCAAGATTAAGACCGAAATTCCAC
CACCGAAACTTTCctatgaaattgatttttttctcgaaaattccagaatt
ttgactttttggtgCAAATTCCGAAATTTCGAACGAtttttcgccaaatt
aaatttttccagACCAAAACAACCCAATTTTCTGTCTTCGACAGTAGACC
TAAATTCCGCTAATCCGTCTAAATTTCTAAAGGTCTTGAAGTTTTGTGTT
GAATTAGAGGATTAAATGTTATGAAATAGAATTATGGGTAGACGAAATTT
TTGGAAGGCAACATTCCAAGGATATTTTGAACAAAGtcggttgtttggaa
gtaattttatcattgatttatttttgattggaaataaaaattttgcattt
ttttttaaacaaggtTTAAATTCACGATTTTCTTAGTTTCTTAGCTGAAG
CGGCCTATCATCACCcagattttcttcttttaataagaattattttgtaa
gaacaatgAGGTCCCCAATGAGGAGATCAagaataagaacatttcaagaa
cagTTATATACTTTAAATTTCGAATCGGTCGAATCACTCATAAAAGATAA
CGACGCGGAGTACGTccaaaatcttttgtttttggtAAAAGAATATGCCA
AGCTTCACggagaactcgagaaaattaaATCGAAAGAATTGGTTGATAAG
TGTGtgcaaatgaaaaaatatctaaatcatcTCTTTGAAGAACGTTTAGA
ATTTATTGTATGTTAAGTCAAAGGTTATTTTGATCAATAGGTACAGGGAT
TTATACGTACCCCCAAAATTCTCGAATAATAAATATTGTAAGATTGAATA
GGTACTAGTTCATTAACCTATGGTTTTACTGATAATGGCCATCTAGTTAA
CTGTTAGTTTCTGGGTTTGGTTTAACTATATTTTTCTTCTCCTATGTTAG
ATAGTATAATAACAGCCTTTCGTGTTTGAAGCCTTTTTCTGCAGCGTTTT
GATTTTCGCTAGCAATTTTAACCTGCCGTATATTTTTTCCGGGGATAATG
TTGATTTGCATCAACATTTTTAGCCTAAACACAGATGATATTGGTAATTC
TTACGACCTGATTAGTGTCCATGACTTTTATAGATTTTAACAAATGAGTG
ACAACTGATTCCTCATCATTGAATTTTGAGTAATCCATCATATTTCTAAA
TTTGTagtattttaaaatatttcataagcGCTATGGGAGACCATCTTTTG
AAATTAGACTAAGacttcattttcgatttcaacgCAGTTCAACgagaaat
atttcaaacgattttcAAAGTCCATCAAAGTCACACTCAATTGTCTAAAC
ACGATCGGTAGCCACGATGTTTAAGGAatcccttttttattttgaagttt
ttaggataCAAATTTTTTGTGGTGAGAACTAGCATTTAAATGTTTTATAA
TATATAGTTTTTTTGTGCTTTCTTCGATGTAATGAATAAGTGACAAGTCG
TTTGTGACGACGGCCTCGGACCGCTAGTTAGATAGTATTTCCCGAACTAG
CTTTagattttaactgtttttgaaataatattttcataataaggaaaata
aaggtttttgattactttaaatagtttttaaaattgaaagctATGCATAG
TCATTAGTATATTTAGTCACAAGTTTTACCAACG Run BLAST on NCBI transcript from alignment at scaffold_485:11537..15670+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068441 ID=TCONS_00068441|Name=TCONS_00068441|organism=Clytia hemisphaerica|type=transcript|length=4134bp|location=Sequence derived from alignment at scaffold_485:11537..15670+ (Clytia hemisphaerica)
agtaagAATAGGGTTAAACCTGAATTTATTCAAAGAAACATTATATGTTT
TGTATTCCTTCTAGATACAACAAAGACACATTGGAATTTACCAGAGCCTG
TTTCCATCTTCTTTGGACGAGAAAATTTGATTGAATCCATTCACttgaaa
attcaacaaaatgaaGCAATTGCTTTGAGTGAAATGGGAGGTGTGGGAAA
AACACAAATTGCTGCAAAGTTCGTTCAAATGCACAAGGATGAATATCAGA
AGATATTTTGGATTTCTGCTGTCAGCCTCAAAAGATCTTTGAGCGAGATT
TTGTGTGCATTTGGTTGTAAACAACTAATACCTGATGAACCTTCGATGGA
AACTCTGACTTTCATTTTCCTCTCTAAGATTTGTGAAGGCTCCAAAAAAT
CGCTGGTTGTATTGGATGACGTCACTGAGGTCACAAAAGACGTCACTTCA
TTTATTCgaaatatgaaagaaaaaatcagcTTATTGTTGACATCTCAATT
GAAAGATTGGGAAGATTATGGCTTGATTCAAATTGCTGTTCCATGTTTCC
AAGAACAAGAATCCATTGGCTTCTTACAGAATGAACTTTCTTCAGCCAGC
CAACATGAAATCTCCATTTTAGCGAATCGTTTACAATCATTACCTTTAGC
CCTTCACCAAGCCATTTGTTacatcaaaaaacataaaattcctCTACACA
AATACATCGAACAATTTGAAGTTTGCAGAGAAAGTGTTTTGGGAATGAAA
ATCAATTCTTTTACTGAATATGACAAAACATTGTTGACAGTTTGGGATTT
GGCTTTTGAGAAAATTCGGGTCGAATCAAAGAATGCTCTTTTGTTCTTGG
GAATGATGGCTTTCATGGACaatcgaaaaatcaataaaaagacaTTCAGC
TATTTTGATAAAGTTGACGAATTTGAATTAAATGAAATCATAAATCTGCT
TTGTCAATATTCATTGGTTGGCGAGCGGAACGAATGTTTAGAAATTCACA
GTCTCGTGCAAAAAGTTATCCGATATCGTATTGAACAAAAACAATTTGTT
GAGGATGAATGGCCGTTGACACTTCTTGAAGATGTTCTTTTGAAAATCGA
GTCTTCTGTTGAAGATTTGGTTGCAAATGATGACTACGAGGATTTATGGT
ACATTCATGTTTTTCGCTTGATCATGAGTGGTGCACTAAAAACTATCAAC
TTTGATGTTAACCAGGTGTTAAATATCGCCGCAGGCAGAATGGAGATGGA
AAACTTATACCTACTTGCTGAACTTCTTTCAAAAGCCTTGTTAAAACAAT
ATAGGTTGTTTCGAGATGTGAAAACTTTTTATACGTTGTTGCTTGTTCAT
CATCGTTTCATAAACGCGTCTATTAAATTAGGTTTACTTAATGTGAATGA
AATTATTGCTTTTGAAAAAGAGTTTTCCACAGAACTTGAAGAACATTCTG
TAGAAGTTTACCAGTGGAAGCTAAAGCAAGCTGAGTTATATAATATACAT
GGAAGAGCGTTGTTATGCAATAATATCGTTCGAAATTTATTCAATGAACT
GGTCAAGAAGAAAGGATTTGATGATATTAAATTAAGATTGGCGAGTTTTT
TTACTGTAATTGATTTTGAAGCTTTGTTGAATTCCGTTGACACAAATAAT
CTCAGTGACACGGACTTTCTGATGTATTATCATGCGAAATGTTCTTTATA
CATCAAGAAGGGTTGCTTTGATTTGGCTGAACAAACCATGAAGAATTGGA
AAGAACACATACACAGAAAACAATTTTCTCGATTATGGCActttaatttc
acaaaaaagaatTGCTTTTTACTTTACAAGAAAGGAGATTATAACGAAGC
ACTACTTGCTTGCGATGAACTTAAACGAGACATTGTTTTTACTGATGCAG
ATGTTTTAATTTTGGAAGCATTGGTTTTGATCAAATTAGGAAAGTTCGAC
GATGCAGAAGTGTTACTTGATGACTTTAATCAACGCAATAATGGAATTAT
CATTAAAATCAGTTCATACCTGAAATTTCGAAAGCACGACTTTGAGGCAG
TAGTAAAGCTCCTCTCTGATGCGGAAGATGAGCGTTtgtcaaatcttttg
tttttggtAAATGAATATGCGAAACTGCATCGACAACTCGAAAATAATAA
GTCGAGAGAAATAGTTGAACGATGTTTGCAAATGAAAAAAGTTGTAAATG
AATTATTTCAAGTACAATTGGATATGATTTATCTTTGAAATCTTATTATA
TGGAATTATGATTAGAATTGGATCTTTGGGAATTACTCCAACTTTTAAGT
GCAGGCTATACTGATAAGTTTTTCAAGTGCCAGCAATGTAATTGTTGCAT
TGATTTGGCCTGTATAATCAGAAgtagtgtttttctttttaattatgaaa
ataattGAGGAGttggtttcagggggtacctgatTCCGCCATTCGGTCAA
GTTTTTGTCAAATTTCCGTCACACCGTCAAGATTAAGACCGAAATTCCAC
CACCGAAACTTTCctatgaaattgatttttttctcgaaaattccagaatt
ttgactttttggtgCAAATTCCGAAATTTCGAACGAtttttcgccaaatt
aaatttttccagACCAAAACAACCCAATTTTCTGTCTTCGACAGTAGACC
TAAATTCCGCTAATCCGTCTAAATTTCTAAAGGTCTTGAAGTTTTGTGTT
GAATTAGAGGATTAAATGTTATGAAATAGAATTATGGGTAGACGAAATTT
TTGGAAGGCAACATTCCAAGGATATTTTGAACAAAGtcggttgtttggaa
gtaattttatcattgatttatttttgattggaaataaaaattttgcattt
ttttttaaacaaggtTTAAATTCACGATTTTCTTAGTTTCTTAGCTGAAG
CGGCCTATCATCACCcagattttcttcttttaataagaattattttgtaa
gaacaatgAGGTCCCCAATGAGGAGATCAagaataagaacatttcaagaa
cagTTATATACTTTAAATTTCGAATCGGTCGAATCACTCATAAAAGATAA
CGACGCGGAGTACGTccaaaatcttttgtttttggtAAAAGAATATGCCA
AGCTTCACggagaactcgagaaaattaaATCGAAAGAATTGGTTGATAAG
TGTGtgcaaatgaaaaaatatctaaatcatcTCTTTGAAGAACGTTTAGA
ATTTATTGTATGTTAAGTCAAAGGTTATTTTGATCAATAGGTACAGGGAT
TTATACGTACCCCCAAAATTCTCGAATAATAAATATTGTAAGATTGAATA
GGTACTAGTTCATTAACCTATGGTTTTACTGATAATGGCCATCTAGTTAA
CTGTTAGTTTCTGGGTTTGGTTTAACTATATTTTTCTTCTCCTATGTTAG
ATAGTATAATAACAGCCTTTCGTGTTTGAAGCCTTTTTCTGCAGCGTTTT
GATTTTCGCTAGCAATTTTAACCTGCCGTATATTTTTTCCGGGGATAATG
TTGATTTGCATCAACATTTTTAGCCTAAACACAGATGATATTGGTAATTC
TTACGACCTGATTAGTGTCCATGACTTTTATAGATTTTAACAAATGAGTG
ACAACTGATTCCTCATCATTGAATTTTGAGTAATCCATCATATTTCTAAA
TTTGTagtattttaaaatatttcataagcGCTATGGGAGACCATCTTTTG
AAATTAGACTAAGacttcattttcgatttcaacgCAGTTCAACgagaaat
atttcaaacgattttcAAAGTCCATCAAAGTCACACTCAATTGTCTAAAC
ACGATCGGTAGCCACGATGTTTAAGGAatcccttttttattttgaagttt
ttaggataCAAATTTTTTGTGGTGAGAACTAGCATTTAAATGTTTTATAA
TATATAGTTTTTTTGTGCTTTCTTCGATGTAATGAATAAGTGACAAGTCG
TTTGTGACGACGGCCTCGGACCGCTAGTTAGATAGTATTTCCCGAACTAG
CTTTagattttaactgtttttgaaataatattttcataataaggaaaata
aaggtttttgattactttaaatagtttttaaaattgaaagctATGCATAG
TCATTAGTATATTTAGTCACAAGTTTTACCAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068441-exon-scaffold_485-1491911889:11537..15670 | TCONS_00068441-exon-scaffold_485-1491911889:11537..15670 | Clytia hemisphaerica | exon |
| TCONS_00068441-exon-scaffold_485-1510915933:11537..15670 | TCONS_00068441-exon-scaffold_485-1510915933:11537..15670 | Clytia hemisphaerica | exon |
| TCONS_00068441-exon-scaffold_485-1575043694:11537..15670 | TCONS_00068441-exon-scaffold_485-1575043694:11537..15670 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_485 | supercontig | scaffold_485:11537..15670 + |
Blast
The following BLAST results are available for this feature:
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