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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068435 ID=TCONS_00068435|Name=TCONS_00068435|organism=Clytia hemisphaerica|type=transcript|length=3035bp
TGAGCAACAAAGTTGACCAGCTATCAATGGAATCAAAATCTGTAAAGGAT
ACAACAAAGACACATTGGAATTTGCCAGAGCCTGTTTCCATCTTCTTTGG
ACGAGAAAGTTTGATTGAATCCATTCACTTGAAACTTCAGCAAAATCAAG
CAATTGCTTTGAGTGAAATGGGAGGTGGAAAACACAAACCGCTGCAAAGT
TCCTTCAAATGCACAAGGATGAATATCAGAAGATATTTTGGATTTCTGCT
GTCAGCCTCAAGAAATCTTTGAACGAGATTTTGTGTACATTTGGTTGTAA
ACAACTAATACCTGATGAACCTTCGATGGAAACTCTGACTTTCATTTTCC
TCTCTAAGATTTGCGAAGGCTCCAAAAGATCGCTGGTTGTATTGGATGAC
GTCACTGAGGTCACAAAAGACGTCACTTCATTCATTCGaaatgtgaaaga
aaaaatcagcTTATTGTTGACATCTCAATTGAGGGATTGGGAAGATTATG
GTTTGATTCAAATTGCTGTTCCATGTTTCCAAGAACAAGAATCCATTGGC
TTCTTACAGAATGAACTTTCTTCAGCCAGCCAACATGATCTCTCCATTTT
AGCGAATCGTTTACANGGTGTTGCCATTGTTTAACAGAGAGATAgcgtaa
aaaatataaatccaaGGGAGTAAAGAAATCCTCTAGTAGTGAACCAAGTA
TTCCAGATCTTAGAGCAAACTCAAACGGACAGAATATTTACCCATAGCTT
TAATTAGGTTTGTGGGAGCACATTTTTTCAGCAttatttttcacacattg
agtcgtttttcaNCATCGAACAATTTGAAGCAtgcagaaaaagtgttttg
ggAATGAAAATCAATTCCTTTACTGAATATGACAAAACATTGTTGACAGT
TTGGGATAtggctttttcgaagatttggGTCGAATCAAAGAATGCTCTTT
TGATCTTGGGAATGATGGCTTTCATGGACAAtcgaaaaatcaacaaaaag
acgttcttttattttgataaagttGACGAATTTGAATTAAATGAAATCAT
CTCACTGCTTGGTCAGTATTCATTGGTCAACGAGCGGAATGGATGTTTAG
AAATTCACAGTCTTGTGCAAAAAGTTATCCGCTATCGTATTGAACAAGAA
CAGTTTGTTGAGGATGAAAGTCCGTTGACACTGCTTGAAGatgttctttt
gaaaattgaggCCTCTGTTGAAAATTTGGTTATAAATGATGACCAGNGAT
TTGGTTATAAATTGCGACTATGAGGATTTATGGTACATTCATGTTTTTCG
TTTGATCATGAGTGGTGCACTCAATGCTATCAACTTTGACGCTTACCTGG
TGTTAGATATAGCCACAGGCAGAATGAAGATGGAAAACTTATACCTACTT
GCTGAACTTTTTGTTAAAGTTGTGTTAAAACAATATAGGTTGTCTCGAGA
TGTGAAAACTTTTGATATGCTGTTGTGTTGTCATCGTCATTTCATATATG
CGTCAAGTCAATTAGGTTTACTTAATGTGaatgagattttttcttttgaa
aaagagttTTCGGCAGAGCTTGAAGAACATTCTGTAGAAGTTTACCAGTG
GAAGCTAAAGCAAGCTGAGTTATATAATATACATGGAAGAGTGTCGTTAT
TCAGTGATGTCgttcaaaatttattcaatgAACTGGTCAAGAAGAAAGGA
TTTGATAATGTTAAATTAAGATTGGCGAGGCTTCTTTCTGTTAATGATGT
TGAATTTTTGTTGAATTCCGTTGACACAAATAATCTCAGTGACACGGACT
TTCTGATGTATTATAATGCAAAATGTTCTTTATACATCAACAAGGGTTGC
TTTGATTTGGCCGAACAAGTCATGAAGAATTGGAAAGAACACATACACAG
ACAACCTTTTTCTCGATCGTCTCATTTTAACTTTACACAAAAGCGTTGCT
TTTTACTTTACAAGAAAGGAAATTACAACGAAGCACTACTTACATGCGAT
GAACTTAAACGAGACATTGTTTTTACTGATGCAGATGTTCTCATTTGGGA
AGCCttgattttgatcaaattaGGAAAGTTCAACGAGGCAGAAGTGTTAT
TTGATCACTTTAATCAACGCAATAATAATGGATTAATCATTAGAATCAGT
TCATACCTGAAATTTCGAAAGCACGACTTTGAGGCAGTAGAAAATCTCCT
CACAAATGTGGAAGATGAGGAtttgtcaaatattttgtttttggtaAAGG
AATATGCGAAACTGCATCGACAATTCGAAAATAATAAATCGAGAGAAATG
GTTGAACGATGcttgcaaatgaaaaaaattgtaaatgaaTTATTTCAAGT
AGAATTGGATTCGATTGATCTTTGAAATCCTATTATATGGAATTATACTT
TAATCGTAAAAATTTTGGTGAGACTAATTTTAGGAGAGATCTTGATTTTT
GGgatttattttagtgaatcacgatttcagaaaatttcgtctggataaat
tttagcgaatgcttgtattacattattgactggattggttttctagcatt
tctttgcactaaaacccttcctattgataaaaatgtataaagGCAGTAAA
ACCACAAATTtggcgcggataaattttagcgatccgTCGATTCAGCGTGT
TTtaacgagatttattttagcgaaaatagggaaaactcgctaaaacgtgC
AGGCTAAACTGATAAGTTTTTCAAGTGACTGCAATGTAATTTTTGCATTG
ACTTGGCCTGTAAAATCAGAAGTAGTGTATGTCTTTttaattatgaaaat
atttgaggGGGTGGTTTCAGGGGGCACCGGATTCCGCCATTcggtaaatt
ttttgttcaatttccgTCACTTCGTCAAGATCAAGACCGAAATTCTGCcc
ccgaaaatttcctttgaaattaattcttttcTCGAGAatttgtgaatttt
gactttttgggggaaattccgaacgatttttcgccaaatttccttttttt
cggACCAAAACAATCCAATTTCTCGTCTTGGACAG Run BLAST on NCBI transcript from alignment at scaffold_485:2058..5367+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068435 ID=TCONS_00068435|Name=TCONS_00068435|organism=Clytia hemisphaerica|type=transcript|length=3310bp|location=Sequence derived from alignment at scaffold_485:2058..5367+ (Clytia hemisphaerica)
TGAGCAACAAAGTTGACCAGCTATCAATGGAATCAAAATCTGTAAAGGGT
AAAACTTTAGCTatgacttttattttttctatccatgctttattatttct
ttattcttttaaaGGAATGTTGCTGAATAAAATGGCCTTTTTTGACGagt
atcatttttttaaacagaATTGAGCAGCAAAGTTGACCAGCTATCAATGg
aatcaaaatctttaaaggGTAAAGCTTTAGCTATGATTTCTATTTTAACT
ACCCATCTCTGCCTGAATTTATTCGAAGAAACTTTATTTAATATTTGTTA
tccttcttttgtattcctTCTAGATACAACAAAGACACATTGGAATTTGC
CAGAGCCTGTTTCCATCTTCTTTGGACGAGAAAGTTTGATTGAATCCATT
CACTTGAAACTTCAGCAAAATCAAGCAATTGCTTTGAGTGAAATGGGAGG
TGGAAAACACAAACCGCTGCAAAGTTCCTTCAAATGCACAAGGATGAATA
TCAGAAGATATTTTGGATTTCTGCTGTCAGCCTCAAGAAATCTTTGAACG
AGATTTTGTGTACATTTGGTTGTAAACAACTAATACCTGATGAACCTTCG
ATGGAAACTCTGACTTTCATTTTCCTCTCTAAGATTTGCGAAGGCTCCAA
AAGATCGCTGGTTGTATTGGATGACGTCACTGAGGTCACAAAAGACGTCA
CTTCATTCATTCGaaatgtgaaagaaaaaatcagcTTATTGTTGACATCT
CAATTGAGGGATTGGGAAGATTATGGTTTGATTCAAATTGCTGTTCCATG
TTTCCAAGAACAAGAATCCATTGGCTTCTTACAGAATGAACTTTCTTCAG
CCAGCCAACATGATCTCTCCATTTTAGCGAATCGTTTACANGGTGTTGCC
ATTGTTTAACAGAGAGATAgcgtaaaaaatataaatccaaGGGAGTAAAG
AAATCCTCTAGTAGTGAACCAAGTATTCCAGATCTTAGAGCAAACTCAAA
CGGACAGAATATTTACCCATAGCTTTAATTAGGTTTGTGGGAGCACATTT
TTTCAGCAttatttttcacacattgagtcgtttttcaNCATCGAACAATT
TGAAGCAtgcagaaaaagtgttttgggAATGAAAATCAATTCCTTTACTG
AATATGACAAAACATTGTTGACAGTTTGGGATAtggctttttcgaagatt
tggGTCGAATCAAAGAATGCTCTTTTGATCTTGGGAATGATGGCTTTCAT
GGACAAtcgaaaaatcaacaaaaagacgttcttttattttgataaagttG
ACGAATTTGAATTAAATGAAATCATCTCACTGCTTGGTCAGTATTCATTG
GTCAACGAGCGGAATGGATGTTTAGAAATTCACAGTCTTGTGCAAAAAGT
TATCCGCTATCGTATTGAACAAGAACAGTTTGTTGAGGATGAAAGTCCGT
TGACACTGCTTGAAGatgttcttttgaaaattgaggCCTCTGTTGAAAAT
TTGGTTATAAATGATGACCAGNGATTTGGTTATAAATTGCGACTATGAGG
ATTTATGGTACATTCATGTTTTTCGTTTGATCATGAGTGGTGCACTCAAT
GCTATCAACTTTGACGCTTACCTGGTGTTAGATATAGCCACAGGCAGAAT
GAAGATGGAAAACTTATACCTACTTGCTGAACTTTTTGTTAAAGTTGTGT
TAAAACAATATAGGTTGTCTCGAGATGTGAAAACTTTTGATATGCTGTTG
TGTTGTCATCGTCATTTCATATATGCGTCAAGTCAATTAGGTTTACTTAA
TGTGaatgagattttttcttttgaaaaagagttTTCGGCAGAGCTTGAAG
AACATTCTGTAGAAGTTTACCAGTGGAAGCTAAAGCAAGCTGAGTTATAT
AATATACATGGAAGAGTGTCGTTATTCAGTGATGTCgttcaaaatttatt
caatgAACTGGTCAAGAAGAAAGGATTTGATAATGTTAAATTAAGATTGG
CGAGGCTTCTTTCTGTTAATGATGTTGAATTTTTGTTGAATTCCGTTGAC
ACAAATAATCTCAGTGACACGGACTTTCTGATGTATTATAATGCAAAATG
TTCTTTATACATCAACAAGGGTTGCTTTGATTTGGCCGAACAAGTCATGA
AGAATTGGAAAGAACACATACACAGACAACCTTTTTCTCGATCGTCTCAT
TTTAACTTTACACAAAAGCGTTGCTTTTTACTTTACAAGAAAGGAAATTA
CAACGAAGCACTACTTACATGCGATGAACTTAAACGAGACATTGTTTTTA
CTGATGCAGATGTTCTCATTTGGGAAGCCttgattttgatcaaattaGGA
AAGTTCAACGAGGCAGAAGTGTTATTTGATCACTTTAATCAACGCAATAA
TAATGGATTAATCATTAGAATCAGTTCATACCTGAAATTTCGAAAGCACG
ACTTTGAGGCAGTAGAAAATCTCCTCACAAATGTGGAAGATGAGGAtttg
tcaaatattttgtttttggtaAAGGAATATGCGAAACTGCATCGACAATT
CGAAAATAATAAATCGAGAGAAATGGTTGAACGATGcttgcaaatgaaaa
aaattgtaaatgaaTTATTTCAAGTAGAATTGGATTCGATTGATCTTTGA
AATCCTATTATATGGAATTATACTTTAATCGTAAAAATTTTGGTGAGACT
AATTTTAGGAGAGATCTTGATTTTTGGgatttattttagtgaatcacgat
ttcagaaaatttcgtctggataaattttagcgaatgcttgtattacatta
ttgactggattggttttctagcatttctttgcactaaaacccttcctatt
gataaaaatgtataaagGCAGTAAAACCACAAATTtggcgcggataaatt
ttagcgatccgTCGATTCAGCGTGTTTtaacgagatttattttagcgaaa
atagggaaaactcgctaaaacgtgCAGGCTAAACTGATAAGTTTTTCAAG
TGACTGCAATGTAATTTTTGCATTGACTTGGCCTGTAAAATCAGAAGTAG
TGTATGTCTTTttaattatgaaaatatttgaggGGGTGGTTTCAGGGGGC
ACCGGATTCCGCCATTcggtaaattttttgttcaatttccgTCACTTCGT
CAAGATCAAGACCGAAATTCTGCccccgaaaatttcctttgaaattaatt
cttttcTCGAGAatttgtgaattttgactttttgggggaaattccgaacg
atttttcgccaaatttcctttttttcggACCAAAACAATCCAATTTCTCG
TCTTGGACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068435-exon-scaffold_485-1491911889:2058..2105 | TCONS_00068435-exon-scaffold_485-1491911889:2058..2105 | Clytia hemisphaerica | exon |
| TCONS_00068435-exon-scaffold_485-1510915933:2058..2105 | TCONS_00068435-exon-scaffold_485-1510915933:2058..2105 | Clytia hemisphaerica | exon |
| TCONS_00068435-exon-scaffold_485-1575043694:2058..2105 | TCONS_00068435-exon-scaffold_485-1575043694:2058..2105 | Clytia hemisphaerica | exon |
| TCONS_00068435-exon-scaffold_485-1491911889:2381..5367 | TCONS_00068435-exon-scaffold_485-1491911889:2381..5367 | Clytia hemisphaerica | exon |
| TCONS_00068435-exon-scaffold_485-1510915933:2381..5367 | TCONS_00068435-exon-scaffold_485-1510915933:2381..5367 | Clytia hemisphaerica | exon |
| TCONS_00068435-exon-scaffold_485-1575043694:2381..5367 | TCONS_00068435-exon-scaffold_485-1575043694:2381..5367 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_485 | supercontig | scaffold_485:2058..5367 + |
Blast
The following BLAST results are available for this feature:
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