TCONS_00068434 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068434
Unique NameTCONS_00068434
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length413

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068434 ID=TCONS_00068434|Name=TCONS_00068434|organism=Clytia hemisphaerica|type=transcript|length=413bp
agatttttctttcaaaaagttctttagTTCTTTAGCATGTAACGGGACTA
GCATACGTCCCATATTTAGAACAACAAATCGTTTCACTCATTCCAGACCA
GTACGTCGACATGCAGTGATTAGATTTCCCCTGAGGGATCACTAAAAATC
TACTGACACTTGGCCAGTTTGCAGCTATATGTGTGGCTTTTTCACAAATT
TCGATACGATCAGGCCCATTAAAATATGCAGGACATCTGCTCTTGATTTG
TTCAACAGCGACGGAACAAGAGCCACGGACGTAGTTTGTGAAACGCGTCA
CTCTGTAAGTACCGATTCTCCAATAACATTTATATTGATTGTATTCGAAT
CTTGTTGAATCAATTACCATTGGTAATAGTAAGATGAGGAATGAGATCTT
CATCATTGTCGAC
Run BLAST on NCBI

transcript from alignment at scaffold_484:13640..14052

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068434 ID=TCONS_00068434|Name=TCONS_00068434|organism=Clytia hemisphaerica|type=transcript|length=413bp|location=Sequence derived from alignment at scaffold_484:13640..14052 (Clytia hemisphaerica)
GTCGACAATGATGAAGATCTCATTCCTCATCTTACTATTACCAATGGTAA
TTGATTCAACAAGATTCGAATACAATCAATATAAATGTTATTGGAGAATC
GGTACTTACAGAGTGACGCGTTTCACAAACTACGTCCGTGGCTCTTGTTC
CGTCGCTGTTGAACAAATCAAGAGCAGATGTCCTGCATATTTTAATGGGC
CTGATCGTATCGAAATTTGTGAAAAAGCCACACATATAGCTGCAAACTGG
CCAAGTGTCAGTAGATTTTTAGTGATCCCTCAGGGGAAATCTAATCACTG
CATGTCGACGTACTGGTCTGGAATGAGTGAAACGATTTGTTGTTCTAAAT
ATGGGACGTATGCTAGTCCCGTTACATGCTAAAGAActaaagaacttttt
gaaagaaaaatct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042707XLOC_042707Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068434-exon-scaffold_484-1491911889:13640..14052TCONS_00068434-exon-scaffold_484-1491911889:13640..14052Clytia hemisphaericaexon
TCONS_00068434-exon-scaffold_484-1510915933:13640..14052TCONS_00068434-exon-scaffold_484-1510915933:13640..14052Clytia hemisphaericaexon
TCONS_00068434-exon-scaffold_484-1575043694:13640..14052TCONS_00068434-exon-scaffold_484-1575043694:13640..14052Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_484supercontigscaffold_484:13640..14052 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.115823	0.693974	0.840816	0	0.741833	0.522216	1.07051	0	0.580362	0	0.246048	0	0.543857	0	0	0	0	0.386054	0.196664
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068434 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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