TCONS_00068422 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068422
Unique NameTCONS_00068422
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length374

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068422 ID=TCONS_00068422|Name=TCONS_00068422|organism=Clytia hemisphaerica|type=transcript|length=374bp
TATATTTTGTTATTAGTctctattttctttaaaacagtTCTGTCACACCA
TATAGATTCTTCAATCATGATGAAGATTTGATTCAAAACTTCagagaatt
tgataaaaatgtagTGTAACCACGCCTAACGCTCAAcaaaacagatatca
ataaTATACAAGTATACAAAAACTCTCCAAAAAATACAGTAAAAGTTACA
TTGGATACTATATAGTTCTGTTTAGAATTTTTATGAGATATTTAttcaat
tttgtaatttttagttcctttttttaaatacactCCTCATCAGTAATGTA
AAATATGCAATTTATTGTTTATTCATACTCATATTGTAAATAGTCtgtat
aaatttcaaaaaagataaaaatat
Run BLAST on NCBI

transcript from alignment at scaffold_483:393137..393510

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068422 ID=TCONS_00068422|Name=TCONS_00068422|organism=Clytia hemisphaerica|type=transcript|length=374bp|location=Sequence derived from alignment at scaffold_483:393137..393510 (Clytia hemisphaerica)
atatttttatcttttttgaaatttatacaGACTATTTACAATATGAGTAT
GAATAAACAATAAATTGCATATTTTACATTACTGATGAGGagtgtattta
aaaaaaggaactaaaaattacaaaattgaaTAAATATCTCATAAAAATTC
TAAACAGAACTATATAGTATCCAATGTAACTTTTACTGTATTTTTTGGAG
AGTTTTTGTATACTTGTATAttattgatatctgttttgTTGAGCGTTAGG
CGTGGTTACActacatttttatcaaattctctGAAGTTTTGAATCAAATC
TTCATCATGATTGAAGAATCTATATGGTGTGACAGAactgttttaaagaa
aatagagACTAATAACAAAATATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042695XLOC_042695Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068422-exon-scaffold_483-1491911889:393137..393510TCONS_00068422-exon-scaffold_483-1491911889:393137..393510Clytia hemisphaericaexon
TCONS_00068422-exon-scaffold_483-1510915933:393137..393510TCONS_00068422-exon-scaffold_483-1510915933:393137..393510Clytia hemisphaericaexon
TCONS_00068422-exon-scaffold_483-1575043694:393137..393510TCONS_00068422-exon-scaffold_483-1575043694:393137..393510Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_483supercontigscaffold_483:393137..393510 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.579924	0	0.552876	0.258798	0.543571	0.224434	0.217841	0.572799	1.85901	0.445523	0.854655	0.393075	0	1.1581	0.228567	0.239179	0.415781	1.21682	0.246534	0.672405	0.461708	0	1.17932	0.629302	0.477303	0.729445
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068422 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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