TCONS_00068420 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068420
Unique NameTCONS_00068420
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length362

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068420 ID=TCONS_00068420|Name=TCONS_00068420|organism=Clytia hemisphaerica|type=transcript|length=362bp
gctagaatcccTTCACgtctcttcgcttgagaaaatgattgacagattaa
agtttttcacccaCACGGGAGCTCTCAGAAGTTCTGCGTGCATTCTGTGA
GTGTTTTTGGCTGATTCCTtggaccgcgctaaaatggtagacctTGCTCT
GACAGCTATCATTTCGATCATttctcaggctcattttcagatggcttcag
caaaaaaaagatttgaaaccAAACTACAGTGTAGGTTAACGTGTGGCAAA
GTTATTTCCAGCTTTTCTTATCTTTGTTtctaaaaatttgatttaaagCC
ATCTATTCATGAGTCTGTTTGCTTATTCTGCAAAAACATTCCACAGCTCG
ATTAAAAAACGC
Run BLAST on NCBI

transcript from alignment at scaffold_483:331699..332060

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068420 ID=TCONS_00068420|Name=TCONS_00068420|organism=Clytia hemisphaerica|type=transcript|length=362bp|location=Sequence derived from alignment at scaffold_483:331699..332060 (Clytia hemisphaerica)
GCGTTTTTTAATCGAGCTGTGGAATGTTTTTGCAGAATAAGCAAACAGAC
TCATGAATAGATGGctttaaatcaaatttttagaAACAAAGATAAGAAAA
GCTGGAAATAACTTTGCCACACGTTAACCTACACTGTAGTTTggtttcaa
atcttttttttgctgaagccatctgaaaatgagcctgagaaATGATCGAA
ATGATAGCTGTCAGAGCAaggtctaccattttagcgcggtccaAGGAATC
AGCCAAAAACACTCACAGAATGCACGCAGAACTTCTGAGAGCTCCCGTGt
gggtgaaaaactttaatctgtcaatcattttctcaagcgaagagacGTGA
Agggattctagc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042693XLOC_042693Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068420-exon-scaffold_483-1491911889:331699..332060TCONS_00068420-exon-scaffold_483-1491911889:331699..332060Clytia hemisphaericaexon
TCONS_00068420-exon-scaffold_483-1510915933:331699..332060TCONS_00068420-exon-scaffold_483-1510915933:331699..332060Clytia hemisphaericaexon
TCONS_00068420-exon-scaffold_483-1575043694:331699..332060TCONS_00068420-exon-scaffold_483-1575043694:331699..332060Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_483supercontigscaffold_483:331699..332060 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.1594	0.685192	1.83783	1.03953	1.57917	0.748392	0.905783	1.41003	1.7338	1.21018	1.91471	0.157883	2.00481	0	1.33578	1.55432	1.0644	1.99684	1.72546	2.32145	0.679578	0.328064	1.0735	0.732107	0.757744	0.68034	1.58977	0.339329	0.257369	1.32553
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068420 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top