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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068419 ID=TCONS_00068419|Name=TCONS_00068419|organism=Clytia hemisphaerica|type=transcript|length=1769bp
aaaagaaaacttttggcTTCATTTTTATCAAGCCTGCTCCTAGATCTCAT
GGGTATTATTTTTGTTCCTAAAGCTAGGCAATTTTCTGTACAAAAACAGT
TGAcagttttttccaaaattggtCCCAATTGCTTGAATAATTGATGCAAA
TATtgcactttttgagttttttagcaccttcttcaaattttcaaaatttt
atatttttgtcagtgagtatttttcaaaaataaaatccccCAAATTTTAG
GGCTctgattttttcattatttccctTCCACCAGACATCCAAAACTTATG
GCGAATAAAATTTCTCACAAACACAATTACTTTAGAAGTTCTAAGTAATT
ATGGCTAAAAGTAATTACAAACCATGTGTTGACCAATTCAAGGGTTGTTT
AGTTGGCGCTCTAATCGGTGATTGTCTTGGTGCACCATTTGAAAGCAATT
CCTTTACAGGAGGAATATCCATGCAAAGAATTACAAATTTGATTAATCCT
CTGAAACTTGAAAGTAAGAGAGAAGGGAGTAAGCGATTCACTGATGATAC
AGCTATGTCTAAATCAGTCAGCTATTCATTAATACATTGTGGTAAGTTTG
ACCCTGTTGATATGGCAGATAGATTCACAAAGTCCTTTTTTGATGAACGA
AGAGGTTGTGCTGGGGGTGTTCGTGATGGCTATGGTGGAGCTGTTAGAGA
AATCTTCTCTTTGTGGGCAAGAAATGGAATCAATATTGAGAATGTTTATA
AACCATCTATCAATCAGTTCGAAGGCAAAGGATCTTATGGAAATGGTGGT
GCAATGAGAGTTGCGTCTGTAGCtttgttttcaaaatctattgaaGAGTG
TGTTGAGAATGCTAGAGGCTCAGCTACCCTCACACATGCTCACAGAAATG
GATACAATGGAGCTATTCTACAATGTTTAGCTGTATATAAAGCTTTGAAT
ACAGAGTTAATTTGTTGGAGAAAGTTTGTTCATGAATTGATTgaagaaat
gagaaaaattgaggatattgaaaataatgaTAAACTGAAATTGacaaaag
aagaatttttggcTGAAGATGATTATGAGGATTTCAGTGAAGAAGAAATT
TTAAGTGAATGGACCAGATCTGAATCATTTTCTTTCACTAAACAACTAAG
AGTTATTGAGGAATTGCTTACAGAGCATtatgaaaatggtaaaatagaTG
ACATAGAACATGTTATAAAGCTCATAGGTAGAGACATCACTGCAGCACAA
GCTGTAACTGCGGCAGTTTATTGTTTCTTACGCaccttaaatgagccaat
agaGAACACTTTGTATTACACTATTTCTCTTGGTGGCGATACTGATACTA
TTGGAACAATGTGTATGGCTATGGTAGGGGCTTATCGGGGGAGTGATCAA
TTTCCAAAAAGTTGGATAAGGGTATGCGAGAGCCATCAAGAGATAAGAAC
ACTTGGAGAAAAACTTTATGAGCAAAAGAATAGATGAACTTGATGAATAG
TAATTCCAAAATTACATGAGAACATTTTCATTATTCATCCCCTAAATTAA
ATGTTTACTTCAAATAAATATCTAGGCTCAAACATCTTTTGTAATTGAAA
ACAGTAATTATGTCATGCTCGAAAAAAGCTAAAAGATTCTATTATTCTTA
AATAGCCCAGAATAGAAAACTTTTATGTTTGAACATAATCATTGAGCCTG
GGTATGATAATGAAATGTTGGgcataaaagaaaaagacaaagacGGAGGC
ATGCTTAATTTCATAGAGG Run BLAST on NCBI protein sequence of TCONS_00068419-protein >TCONS_00068419-protein ID=TCONS_00068419-protein|Name=TCONS_00068419-protein|organism=Clytia hemisphaerica|type=polypeptide|length=378bp
MAKSNYKPCVDQFKGCLVGALIGDCLGAPFESNSFTGGISMQRITNLINP
LKLESKREGSKRFTDDTAMSKSVSYSLIHCGKFDPVDMADRFTKSFFDER
RGCAGGVRDGYGGAVREIFSLWARNGINIENVYKPSINQFEGKGSYGNGG
AMRVASVALFSKSIEECVENARGSATLTHAHRNGYNGAILQCLAVYKALN
TELICWRKFVHELIEEMRKIEDIENNDKLKLTKEEFLAEDDYEDFSEEEI
LSEWTRSESFSFTKQLRVIEELLTEHYENGKIDDIEHVIKLIGRDITAAQ
AVTAAVYCFLRTLNEPIENTLYYTISLGGDTDTIGTMCMAMVGAYRGSDQ
FPKSWIRVCESHQEIRTLGEKLYEQKNR Run BLAST on NCBI transcript from alignment at scaffold_483:329417..331185 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068419 ID=TCONS_00068419|Name=TCONS_00068419|organism=Clytia hemisphaerica|type=transcript|length=1769bp|location=Sequence derived from alignment at scaffold_483:329417..331185 (Clytia hemisphaerica)
CCTCTATGAAATTAAGCATGCCTCCgtctttgtctttttcttttatgcCC
AACATTTCATTATCATACCCAGGCTCAATGATTATGTTCAAACATAAAAG
TTTTCTATTCTGGGCTATTTAAGAATAATAGAATCTTTTAGCTTTTTTCG
AGCATGACATAATTACTGTTTTCAATTACAAAAGATGTTTGAGCCTAGAT
ATTTATTTGAAGTAAACATTTAATTTAGGGGATGAATAATGAAAATGTTC
TCATGTAATTTTGGAATTACTATTCATCAAGTTCATCTATTCTTTTGCTC
ATAAAGTTTTTCTCCAAGTGTTCTTATCTCTTGATGGCTCTCGCATACCC
TTATCCAACTTTTTGGAAATTGATCACTCCCCCGATAAGCCCCTACCATA
GCCATACACATTGTTCCAATAGTATCAGTATCGCCACCAAGAGAAATAGT
GTAATACAAAGTGTTCtctattggctcatttaaggtGCGTAAGAAACAAT
AAACTGCCGCAGTTACAGCTTGTGCTGCAGTGATGTCTCTACCTATGAGC
TTTATAACATGTTCTATGTCAtctattttaccattttcataATGCTCTGT
AAGCAATTCCTCAATAACTCTTAGTTGTTTAGTGAAAGAAAATGATTCAG
ATCTGGTCCATTCACTTAAAATTTCTTCTTCACTGAAATCCTCATAATCA
TCTTCAgccaaaaattcttcttttgtCAATTTCAGTTTAtcattattttc
aatatcctcaatttttctcatttcttcAATCAATTCATGAACAAACTTTC
TCCAACAAATTAACTCTGTATTCAAAGCTTTATATACAGCTAAACATTGT
AGAATAGCTCCATTGTATCCATTTCTGTGAGCATGTGTGAGGGTAGCTGA
GCCTCTAGCATTCTCAACACACTCttcaatagattttgaaaacaaaGCTA
CAGACGCAACTCTCATTGCACCACCATTTCCATAAGATCCTTTGCCTTCG
AACTGATTGATAGATGGTTTATAAACATTCTCAATATTGATTCCATTTCT
TGCCCACAAAGAGAAGATTTCTCTAACAGCTCCACCATAGCCATCACGAA
CACCCCCAGCACAACCTCTTCGTTCATCAAAAAAGGACTTTGTGAATCTA
TCTGCCATATCAACAGGGTCAAACTTACCACAATGTATTAATGAATAGCT
GACTGATTTAGACATAGCTGTATCATCAGTGAATCGCTTACTCCCTTCTC
TCTTACTTTCAAGTTTCAGAGGATTAATCAAATTTGTAATTCTTTGCATG
GATATTCCTCCTGTAAAGGAATTGCTTTCAAATGGTGCACCAAGACAATC
ACCGATTAGAGCGCCAACTAAACAACCCTTGAATTGGTCAACACATGGTT
TGTAATTACTTTTAGCCATAATTACTTAGAACTTCTAAAGTAATTGTGTT
TGTGAGAAATTTTATTCGCCATAAGTTTTGGATGTCTGGTGGAagggaaa
taatgaaaaaatcagAGCCCTAAAATTTGggggattttatttttgaaaaa
tactcactgacaaaaatataaaattttgaaaatttgaagaaggtgctaaa
aaactcaaaaagtgcaATATTTGCATCAATTATTCAAGCAATTGGGacca
attttggaaaaaactgTCAACTGTTTTTGTACAGAAAATTGCCTAGCTTT
AGGAACAAAAATAATACCCATGAGATCTAGGAGCAGGCTTGATAAAAATG
AAgccaaaagttttctttt Coding sequence (CDS) from alignment at scaffold_483:329417..331185 >TCONS_00068419 ID=TCONS_00068419|Name=TCONS_00068419|organism=Clytia hemisphaerica|type=CDS|length=1137bp|location=Sequence derived from alignment at scaffold_483:329417..331185 (Clytia hemisphaerica)
TCATCTATTCTTTTGCTCATAAAGTTTTTCTCCAAGTGTTCTTATCTCTT
GATGGCTCTCGCATACCCTTATCCAACTTTTTGGAAATTGATCACTCCCC
CGATAAGCCCCTACCATAGCCATACACATTGTTCCAATAGTATCAGTATC
GCCACCAAGAGAAATAGTGTAATACAAAGTGTTCtctattggctcattta
aggtGCGTAAGAAACAATAAACTGCCGCAGTTACAGCTTGTGCTGCAGTG
ATGTCTCTACCTATGAGCTTTATAACATGTTCTATGTCAtctattttacc
attttcataATGCTCTGTAAGCAATTCCTCAATAACTCTTAGTTGTTTAG
TGAAAGAAAATGATTCAGATCTGGTCCATTCACTTAAAATTTCTTCTTCA
CTGAAATCCTCATAATCATCTTCAgccaaaaattcttcttttgtCAATTT
CAGTTTAtcattattttcaatatcctcaatttttctcatttcttcAATCA
ATTCATGAACAAACTTTCTCCAACAAATTAACTCTGTATTCAAAGCTTTA
TATACAGCTAAACATTGTAGAATAGCTCCATTGTATCCATTTCTGTGAGC
ATGTGTGAGGGTAGCTGAGCCTCTAGCATTCTCAACACACTCttcaatag
attttgaaaacaaaGCTACAGACGCAACTCTCATTGCACCACCATTTCCA
TAAGATCCTTTGCCTTCGAACTGATTGATAGATGGTTTATAAACATTCTC
AATATTGATTCCATTTCTTGCCCACAAAGAGAAGATTTCTCTAACAGCTC
CACCATAGCCATCACGAACACCCCCAGCACAACCTCTTCGTTCATCAAAA
AAGGACTTTGTGAATCTATCTGCCATATCAACAGGGTCAAACTTACCACA
ATGTATTAATGAATAGCTGACTGATTTAGACATAGCTGTATCATCAGTGA
ATCGCTTACTCCCTTCTCTCTTACTTTCAAGTTTCAGAGGATTAATCAAA
TTTGTAATTCTTTGCATGGATATTCCTCCTGTAAAGGAATTGCTTTCAAA
TGGTGCACCAAGACAATCACCGATTAGAGCGCCAACTAAACAACCCTTGA
ATTGGTCAACACATGGTTTGTAATTACTTTTAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068419-exon-scaffold_483-1491911889:329417..331185 | TCONS_00068419-exon-scaffold_483-1491911889:329417..331185 | Clytia hemisphaerica | exon |
| TCONS_00068419-exon-scaffold_483-1510915933:329417..331185 | TCONS_00068419-exon-scaffold_483-1510915933:329417..331185 | Clytia hemisphaerica | exon |
| TCONS_00068419-exon-scaffold_483-1575043694:329417..331185 | TCONS_00068419-exon-scaffold_483-1575043694:329417..331185 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_483 | supercontig | scaffold_483:329417..331185 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005502 | Ribosyl_crysJ1 |
Blast
BLAST of TCONS_00068419 vs. Swiss-Prot (Human)
Match: ARHL2 (Poly(ADP-ribose) glycohydrolase ARH3 OS=Homo sapiens GN=ADPRHL2 PE=1 SV=1) HSP 1 Score: 212.616 bits (540), Expect = 2.631e-62 Identity = 139/380 (36.58%), Postives = 203/380 (53.42%), Query Frame = 3
Query: 378 VDQFKGCLVGALIGDCLGAPFESNSFTGGISMQRITNLINPLKLESKREGSKR-----FTDDTAMSKSVSYSLIHCGKFDPVDMADRFTKSFF-DERRGCAGGVRDGYGGAVREIFSLWARNGINIENVYKPSINQFEGKGSYGNGGAMRVASVALFSKSIEECVENARGSATLTHAHRNGYNGAILQCLAVYKALNTELICWRKFVHELIEEMRKIEDIENNDKLKLTKEEFLAEDDYEDFSEEEILSEWTRSESFSFTKQLRVIEELLTEHYENGKIDDIEHVIKLIGRDITAAQAVTAAVYCFLRTLNEP----------IENTLYYTISLGGDTDTIGTMCMAMVGAYRGSDQFPKSWIRVCESHQEIRTLGEKLY 1469
+ +F+GCL GAL+GDC+G+ +E++ + + + + L+ + GS+R +TDDTAM++++ SL+ FD VDMA RF + + D RG YG V +F +V++P+ QF GKGSYGNGGAMRVA ++L S+++ + AR SA LTHA GYNGAILQ LAV+ AL E F+ +L+ M ED+E + + L E E+ ++ +L+ I ELL + E V+ +G I A ++V A+YCFLR + EP ++ TL Y+ISLGGDTDTI TM A+ GAY G DQ P+SW + CE ++E L + L+
Sbjct: 20 LSRFRGCLAGALLGDCVGSFYEAHDT---VDLTSVLRHVQSLEPDPGTPGSERTEALYYTDDTAMARALVQSLLAKEAFDEVDMAHRFAQEYKKDPDRG--------YGAGVVTVFKKLLNP--KCRDVFEPARAQFNGKGSYGNGGAMRVAGISLAYSSVQDVQKFARLSAQLTHASSLGYNGAILQALAVHLALQGE-SSSEHFLKQLLGHM---EDLEGDAQSVLDARELGMEER-------------------PYSSRLKKIGELLDQASVTR-----EEVVSELGNGIAAFESVPTAIYCFLRCM-EPDPEIPSAFNSLQRTLIYSISLGGDTDTIATMAGAIAGAYYGMDQVPESWQQSCEGYEETDILAQSLH 357
The following BLAST results are available for this feature:
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