TCONS_00068415 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068415
Unique NameTCONS_00068415
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length462

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068415 ID=TCONS_00068415|Name=TCONS_00068415|organism=Clytia hemisphaerica|type=transcript|length=462bp
tcTGTTTTAGACTTTAAATTTTCTTGACttgcttttaacatttttgccat
cgaagccttatgttcttgtatagttttttcttataataaaacgtATAACT
CTATTTCGGACgaaactgtcaatcaaaaagTGTGAACCAATTAGATTACA
CACATGCCCTATGAgtagcaaagttaaggttcagGGAGTGTCTTTACCAG
AAGGAAACGATTTTGTCTCTGTAACTGTTTAAAAACATCATAGACTTCAC
ATTGTAATACCGTTTCAAATGACTAACGCCACAGcaaatttaaagcaaaa
cgcCAAATAGAGGTGTTTTagaaaatttccatttttattttCGATCAATT
TACATAACGGTCTGTTTTAACAACTTGTTCGCTAGTTTATTATTATGGTT
TTAATTTTGTATAATTTATGGTGCTTATGTTTAATATGgagaaaatacaa
aatgacgTTCAG
Run BLAST on NCBI

transcript from alignment at scaffold_483:229928..230389

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068415 ID=TCONS_00068415|Name=TCONS_00068415|organism=Clytia hemisphaerica|type=transcript|length=462bp|location=Sequence derived from alignment at scaffold_483:229928..230389 (Clytia hemisphaerica)
CTGAAcgtcattttgtattttctcCATATTAAACATAAGCACCATAAATT
ATACAAAATTAAAACCATAATAATAAACTAGCGAACAAGTTGTTAAAACA
GACCGTTATGTAAATTGATCGaaaataaaaatggaaattttctAAAACAC
CTCTATTTGgcgttttgctttaaatttgCTGTGGCGTTAGTCATTTGAAA
CGGTATTACAATGTGAAGTCTATGATGTTTTTAAACAGTTACAGAGACAA
AATCGTTTCCTTCTGGTAAAGACACTCCctgaaccttaactttgctacTC
ATAGGGCATGTGTGTAATCTAATTGGTTCACActttttgattgacagttt
cGTCCGAAATAGAGTTATacgttttattataagaaaaaactatacaagaa
cataaggcttcgatggcaaaaatgttaaaagcaaGTCAAGAAAATTTAAA
GTCTAAAACAga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042688XLOC_042688Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068415-exon-scaffold_483-1491911889:229928..230389TCONS_00068415-exon-scaffold_483-1491911889:229928..230389Clytia hemisphaericaexon
TCONS_00068415-exon-scaffold_483-1510915933:229928..230389TCONS_00068415-exon-scaffold_483-1510915933:229928..230389Clytia hemisphaericaexon
TCONS_00068415-exon-scaffold_483-1575043694:229928..230389TCONS_00068415-exon-scaffold_483-1575043694:229928..230389Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_483supercontigscaffold_483:229928..230389 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.140228	0	0.158774	0	0.378211	0.149434	0.180286	0	0.118168	0	0	0.0933912	0.0932614	0.67797	1.5129	1.70902	0.315806	0.647383	0.596263	0.935919	0.542322	0.396789	2.73331	3.65438	3.16169	3.09047	0	0.410414	7.31519	7.92875
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068415 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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