TCONS_00068408 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068408
Unique NameTCONS_00068408
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length858

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068408 ID=TCONS_00068408|Name=TCONS_00068408|organism=Clytia hemisphaerica|type=transcript|length=858bp
atttaattagtgtttattATTCTATTCGATTGAATTTGATCCTTGGTATG
TTCATCATTAGGCTCTAtctatactttattttttttcgcggTTGTTTGTG
TATTTACTGATATTTATTCTTGTTGTTTTATTGAaaccattttttgttta
tttgtcttttgtAGATTTTATTATTATTGAGTTTTTTTCATGAACAGGGA
CAGTTCTTCAACCGATTTGAGATTAGGATACTTTCCTTGATCTTGATGGT
CCAAAAATCGTcctgatttctaggaaattttcatttatttttgtagtttt
tttgtataaaatgtTTGTGTCTTTAGCCTCGTTCGAGAAAAGATTTCAAG
TTTTCAAGTTCTGAATTTATGATATTTTCAAGACaattaatttattttct
gaaaaagctaatttttgatatttgaggTGTTTCTATACGTCAATTTCTTG
TCACAAAGAGATTTTATCTCAATCTAAGTAGCCTCTAAGGACCTTGTACA
TGAGAGATTGAGATGTTTATATAAAATGGTGTCCTTGATAACACCTGCTC
ATATTAATATTTATAGGGTTGATTTCTCTGTTTTAgtataatattttaaa
agtaaaaaggTTTTCTAAAAACCGAAATCAAGATATCTGGAAAAGTATCG
CGTCAATTCAATAGAATAATCACGATACAGTTTTTAACTATTACGCGATG
TTTTTCCATAGTTACGCCATTCTGGAAGCGCGCAATTTTGTACATAGATA
GTAAGTAAGAAAAGAAGCTCATTTTTTGGCTCGCtgtttattattttgaa
aaaaagaagaaagttttAACCATTGCTAAAATATATTATATGATAAAATT
GAATAATA
Run BLAST on NCBI

transcript from alignment at scaffold_483:76966..77823

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068408 ID=TCONS_00068408|Name=TCONS_00068408|organism=Clytia hemisphaerica|type=transcript|length=858bp|location=Sequence derived from alignment at scaffold_483:76966..77823 (Clytia hemisphaerica)
TATTATTCAATTTTATCATATAATATATTTTAGCAATGGTTaaaactttc
ttctttttttcaaaataataaacaGCGAGCCAAAAAATGAGCTTCTTTTC
TTACTTACTATCTATGTACAAAATTGCGCGCTTCCAGAATGGCGTAACTA
TGGAAAAACATCGCGTAATAGTTAAAAACTGTATCGTGATTATTCTATTG
AATTGACGCGATACTTTTCCAGATATCTTGATTTCGGTTTTTAGAAAAcc
tttttacttttaaaatattatacTAAAACAGAGAAATCAACCCTATAAAT
ATTAATATGAGCAGGTGTTATCAAGGACACCATTTTATATAAACATCTCA
ATCTCTCATGTACAAGGTCCTTAGAGGCTACTTAGATTGAGATAAAATCT
CTTTGTGACAAGAAATTGACGTATAGAAACAcctcaaatatcaaaaatta
gctttttcagaaaataaattaattGTCTTGAAAATATCATAAATTCAGAA
CTTGAAAACTTGAAATCTTTTCTCGAACGAGGCTAAAGACACAAacattt
tatacaaaaaaactacaaaaataaatgaaaatttcctagaaatcaggACG
ATTTTTGGACCATCAAGATCAAGGAAAGTATCCTAATCTCAAATCGGTTG
AAGAACTGTCCCTGTTCATGAAAAAAACTCAATAATAATAAAATCTacaa
aagacaaataaacaaaaaatggttTCAATAAAACAACAAGAATAAATATC
AGTAAATACACAAACAAccgcgaaaaaaaataaagtatagaTAGAGCCTA
ATGATGAACATACCAAGGATCAAATTCAATCGAATAGAATaataaacact
aattaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042681XLOC_042681Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068408-exon-scaffold_483-1491911889:76966..77823TCONS_00068408-exon-scaffold_483-1491911889:76966..77823Clytia hemisphaericaexon
TCONS_00068408-exon-scaffold_483-1510915933:76966..77823TCONS_00068408-exon-scaffold_483-1510915933:76966..77823Clytia hemisphaericaexon
TCONS_00068408-exon-scaffold_483-1575043694:76966..77823TCONS_00068408-exon-scaffold_483-1575043694:76966..77823Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_483supercontigscaffold_483:76966..77823 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.56927	2.29221	2.16632	3.63326	16.3656	7.22348	10.5421	11.6459	5.89636	4.67887	4.37527	4.76928	3.05392	2.07659	2.07973	3.66426	11.1621	8.79087	2.15008	3.16203	15.2746	14.54	7.1453	9.00339	4.98879	8.06666	12.6677	15.6792	2.97303	2.90542
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068408 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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