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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068354 ID=TCONS_00068354|Name=TCONS_00068354|organism=Clytia hemisphaerica|type=transcript|length=797bp
CAATGAAgtaataaaatttcaatttaaattcTAGATGTAAACTAAAAAAA
GTGAATCTTGATTTTGCATGGCAGCATCTCGCTACTTGGCAGCAGCTCAA
AAAGCTATCAAACAAGTCGCTAATCACCCGACATTAAAAAATTACAGTAC
TACAATTTTATCCCCTCTGAAGGTTGTTGGTGCTACCGATGAAGGTGTTA
TAAAGTTCAATTGGAAAGTGGAGGAAAAACATTTAACACCTGGTGGAGGA
CTTCATGGTGGATTAACTGCTGGTATCATCGATTTAACTCATGGAATTGG
AATCCTTGCAGTGTCCGACTGCACACAAACAGCAACAACATTAGAACTTA
ATATCAGTTACATGCGATACGTTCCAAATGATGAATTATTAGACATTGAA
TCTCGAGTGGCTAAACAAGGAAGCAGAATTGCTTTTATGGAGACGACCAT
TATGGATTCAAAGGGCAGTATCATAGCAACGGGTAAACAAACTGCAATGT
TGGCAGAATCATAGCAACGGGTAAACAAACTGCAATGTTGGTAGATGTTT
CAAAAGCATACGAATTTTCACAGGAagtactctcaggtgcctaataaccG
AATTGGAGAAAGAAAAGTGTTCAAATTTCAATGAACGGCTGGACGAGGCT
GATTGCTCGTATTGTATCGGGGATGGCCTGGTAAATGCTAtgttgaaaaa
cttgaaaaatcgaaaaaatcaacGAGGTTGGGAGGCCATTAATAGATATA
TTGAGAGTTGTCACACACAAAACTAATGCTATACAAACAATGTCTTT Run BLAST on NCBI protein sequence of TCONS_00068354-protein >TCONS_00068354-protein ID=TCONS_00068354-protein|Name=TCONS_00068354-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MAASRYLAAAQKAIKQVANHPTLKNYSTTILSPLKVVGATDEGVIKFNWK
VEEKHLTPGGGLHGGLTAGIIDLTHGIGILAVSDCTQTATTLELNISYMR
YVPNDELLDIESRVAKQGSRIAFMETTIMDSKGSIIATGKQTAMLAES Run BLAST on NCBI transcript from alignment at scaffold_483:559172..563766+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068354 ID=TCONS_00068354|Name=TCONS_00068354|organism=Clytia hemisphaerica|type=transcript|length=4595bp|location=Sequence derived from alignment at scaffold_483:559172..563766+ (Clytia hemisphaerica)
CAATGAAgtaataaaatttcaatttaaattcTAGATGTAAACTAAAAAAA
GTGAATCTTGATTTTGCATGGCAGCATCTCGCTACTTGGCAGCAGCTCAA
AAAGCTATCAAACAAGTCGCTAATCACCCGACATTAAAAAATTACAGTAC
TACAATTTTATCCCCTCTGAAGGTTGTTGGTGCTACCGATGAAGGTGTTA
TAAAGTTCAATTGGAAAGTGGAGGAAAAACATTTAACACCTGGTGGAGGA
CTTCATGGTGGATTAACTGCTGGTATGTTTTAGCAAATTTCAAGATGGGa
gccagtttgcagagtgtggCACGTATGCTTGAGATCTCGAATGCACAACT
CTGAAAAAGTCGAGTgcaggtgcaaaatttgaggttttcaggtgcaagCT
CAGACGGTTTTTTTACCTCAAATGcagctaattttagcaattttttgcct
ttttgggcGAATTTCCGAGGTGTAGGTGCACCTTGTCCAGACCAAAATTT
ATCAGTGCGGAACTTCCAGTGTGGTATCTCCAAATTTTTCCTCGAGTGCA
GCcttgccatactctgcaaactgggaTGGCAGGGCACGACATtgcttcaa
cgttcatctaacgttacatGGATGACATGAGATAATCTTTACCGTTGCTT
TTCACTGAACTTTTTAACTTCTACTTTATTTTCAGTCTGTTTGAGACTCT
TTTATATCAAAAAACTTCTCGGTTTTTAGAGTTTTATTATCATCATGTTA
TTTCGTAATGTTAAATCCACACGAACTTCAATGTACCTTTCCAACCGTAG
CCATCAATTGCCGCGCGAgctttttttgcacctatagacaataggtgtca
aaaaaaaaggattggatcgagtttaggaggataattaaataataaagtgg
cacgcgcctgaccgcgcgacttcGGTCGAAATGGTGGTGTTTAAAAGTAA
CTTGACAAATATTTCTTAATCTAAGGTATCATCGATTTAACTCATGGAAT
TGGAATCCTTGCAGTGTCCGACTGCACACAAACAGCAACAACATTAGAAC
TTAATATCAGTTACATGCGATACGTTCCAAATGATGAATTATTAGACATT
GAATCTCGAGTGGCTAAACAAGGAAGCAGAATTGCTTTTATGGAGACGAC
CATTATGGATTCAAAGGGCAGTATCATAGCAACGGGTAAACAAACTGCAA
TGTTGGTAGATGTTTCAAAAGAATATTAATATAGATGAAATTTTatctgt
tttattttcaaatcatcaTGTACCATATAAGAGCCCTTCCTCCGTAGAGG
ACCCAAATCTCACGCATTCACacattttttgctgaaattcacGCATTTAG
GCGAATTTTTCTCCAGTTTCACGCAAACCCGGTTTTTCAGAATATTGGGA
AATTTTTTGGGTAAAAATTGGGGAAATTTGCACCAAATAGGTAgaaacaa
aattataaaaaaattatcttattCACGCAATTCATACAATCACGttatca
aaaagtggattttcacgttcccggaagttttttttttaattcatgcATTT
GCgcatttatttatttctagttggaatttttattttagattatTTAAATC
AAGTCTAAGTATATCAatacattttaaaataaaagaaaagacaTCAGTCT
GACATAATGCATGTTGTCAATATCCCCCGGGGAAGGGGTGCTTAGGTAAG
TGAAGGGTAGGTGTATGTGCTGCCCtttcgaaaattggtcaaattagtcc
caataggAGTCGTacaattcacaaaattttcaaacttctcCGGTTAAGGG
TCCGAGGGTTGAAATCTGGGTAGCACCCCTCGTCATTCAGTAAACCTAGT
ACCCCAGCCCCATGCCAAAGTTaacaaaaataattataaaaattgaatat
aataaGCAACCTCGGACCCAGTTCTTTCCTCCTCGAGCGTTTTTTAATAT
TCTAATGGTAACTACTAAGGGGGAGATGAAAGCTAAAaaggttttaataa
aatctttgtttttacgtTATAACATTTTCATGGTATAACTTTCTAAGGCT
GTTTTTAGTTATACTTTCGGAGCGGACTTGTCCTTTCTGAGACTATGTAA
ACCTAAATCTATTAATTTCATCTTTCTAGAAGTAAATTAATGAAAAGGAA
TGCATGGCAGCATCTCGCTACTTGGCAGCAGCTCAAAAAGCTATTAAACA
AGTCGCTAATCACCCGACATTAAAAAATTACAACACTACAATTTTATCCC
CTCTGAAGGTTGTTGGTGCTACCGATGAAGGTGTTATAAAGTTCAATTGG
AAAGTGGAGGAAAAACATTTAACACCTGCTGGAAGACTTCATGGTGGATT
GACTGCTGGtatgttttgttttggtttcgcTTAAAAATCTAAGATTTGGG
GATAacaccatagtcattataaaaaaccccggtctggcaatgtattgttt
tagctttttgttcaattttcttttgttacaaacaaaagacaagttgcgac
ttgcatactttttgatcacgttaccaaaatctcctcttgggattggtcta
tttctATATCACacgatcaaaaagtttgcaaaataaatcgattttggtac
gtaagctccatcttttaacaataaaaagagacaaaagccttccagaccag
tgtttttataatgactatgataaCACGTTGTTCCACTTTTAGGACTGCCA
GCATTCTGAAAAatgctttaggcgtacaaactttcacgagcagaaacttt
cacgattttcgcgaattttggtcTTTTCGCAAAAGTTAAtgtctttgaaa
aattctttacagggtaattcgcgaaagtttatgcttgcgaaaaatacttt
ttcctcaaattcacgaaagtaaatgtcgtgaatttcgcgatttgtCGACC
TCGCAAAAAGTTTCTGCTAGGGAAGGTTTGTACGCGTAAAGTACCTGGGA
AATGAAACTTGTCCTTGAAAATCCTGGAAATTCGCTGAAAATCCTAAAAA
TGTCctggaaaatctttgaaattaaaaactttgaaatcgaCTTTACTTTC
AGATTAGTATACTTTGGAAAATCTTCTCAACTTTGGTGCTTggtacaaat
tatttttatactcAGAAAAAATGCCCTGGAATATCCTTAAAATTTCCATT
CAAGGCTGGAAACCCTGACCTTCCATTTTTAAGGTTTTACAGTATGACCC
aaaaaaaagcggacaaatttttatacaaagTGAAATGCTCATAATTTTTG
CGAAATGTTATGAATATTTTCATCTCAAAACCTATTCTATCATCTTGTGA
ATTtaatatctattgattgaacaaagaatttcaatcttatttcaattatt
ttaagcCCAGTTTGGATGAtgagttttgaagattttactttatataaaaa
tttgtccgcttacATTGTATGTCCGCTATTGTCATCGGATGAGTGTTGAG
ACGTTGTGTGAAAAGTTATTTGGCTAATCTCTCTAAGTTATACTTAAACT
GTCAGCACCCCTCTGGTTTGATTGTCTGTAAGAAAATCACGTctgttttg
caaatttttgagaagtacattaaaggaagaaattttggcgggaagaaaat
ttggcggattttggtcAAAATCCGTCAAAtcaagttcccgccaaaattaa
tttttccgtcatctgccaaattaaattcccatcaaaatgtcttttttgtt
aattttgagcTAACTTGTCAGCACCATTTGTTTCGATGAGAAAATCTGTA
ATGGTAAACGAGGTCATTAGTTTGGTGATAGCAGTTGAACAAAAAGGGTT
ACACGATGAAAATTTGTTAAGTGGATGCGTTTTTTCGAGTTTAATTCGCA
TTCCAGCTAAAGTTCTTGCTTCAGCTTAAAAGTCTACAATCCTTACATAA
CTCTTTATCACTCCCCCTTCCCCATCTTCAGTGTTGATTTGGGGTCAGTG
GAACTTGCAAGTTTCCTCCCTCCAACAATGAAAGTGGGGGAAGGGGGGAC
TCAGCATGGGGGAATAATTAGTCAGACAACAGTTCTGGCCACGATTGTAC
ATTTCGAACtattcattatttttcttatttgaaaTCTATTACCGTTGATT
ATTTCTCTAAATTAAAGGTATCATCGATTTAACTCATGGAATTGCAGTGT
CCGACTGCACACAAACAGCAACAACATTAGAACTTAATATCAATTACATG
CGATACGTTCCAAATAATGAATTATTAGACATTGAATCTCGAGTGGCTAA
ACAAGGAAGCAGAATTGCTTTTTTGGAGACGACCATTATGGATTCAAAAG
GCAGAATCATAGCAACGGGTAAACAAACTGCAATGTTGGTAGATGTTTCA
AAAGCATACGAATTTTCACAGGAagtactctcaggtgcctaataaccGAA
TTGGAGAAAGAAAAGTGTTCAAATTTCAATGAACGGCTGGACGAGGCTGA
TTGCTCGTATTGTATCGGGGATGGCCTGGTAAATGCTAtgttgaaaaact
tgaaaaatcgaaaaaatcaacGAGGTTGGGAGGCCATTAATAGATATATT
GAGAGTTGTCACACACAAAACTAATGCTATACAAACAATGTCTTT Coding sequence (CDS) from alignment at scaffold_483:559172..563766+ >TCONS_00068354 ID=TCONS_00068354|Name=TCONS_00068354|organism=Clytia hemisphaerica|type=CDS|length=1341bp|location=Sequence derived from alignment at scaffold_483:559172..563766+ (Clytia hemisphaerica)
ATGGCAGCATCTCGCTACTTGGCAGCAGCTCAAAAAGCTATCAAACAAGT
CGCTAATCACCCGACATTAAAAAATTACAGTACTACAATTTTATCCCCTC
TGAAGGTTGTTGGTGCTACCGATGAAGGTGTTATAAAGTTCAATTGGAAA
GTGGAGGAAAAACATTTAACACCTGGTGGAGGACTTCATGGTGGATTAAC
TGCTGGTATCATCGATTTAACTCATGGAATTGGAATCCTTGCAGTGTCCG
ACTGCACACAAACAGCAACAACATTAGAACTTAATATCAGTTACATGCGA
TACGTTCCAAATGATGAATTATTAGACATTGAATCTCGAGTGGCTAAACA
AGGAAGCAGAATTGCTTTTATGGAGACGACCATTATGGATTCAAAGGGCA
GTATCATAGCAACGGGTAAACAAACTGCAATGTTGGCAGAATCATAGATG
GCAGCATCTCGCTACTTGGCAGCAGCTCAAAAAGCTATCAAACAAGTCGC
TAATCACCCGACATTAAAAAATTACAGTACTACAATTTTATCCCCTCTGA
AGGTTGTTGGTGCTACCGATGAAGGTGTTATAAAGTTCAATTGGAAAGTG
GAGGAAAAACATTTAACACCTGGTGGAGGACTTCATGGTGGATTAACTGC
TGGTATCATCGATTTAACTCATGGAATTGGAATCCTTGCAGTGTCCGACT
GCACACAAACAGCAACAACATTAGAACTTAATATCAGTTACATGCGATAC
GTTCCAAATGATGAATTATTAGACATTGAATCTCGAGTGGCTAAACAAGG
AAGCAGAATTGCTTTTATGGAGACGACCATTATGGATTCAAAGGGCAGTA
TCATAGCAACGGGTAAACAAACTGCAATGTTGGCAGAATCATAGATGGCA
GCATCTCGCTACTTGGCAGCAGCTCAAAAAGCTATCAAACAAGTCGCTAA
TCACCCGACATTAAAAAATTACAGTACTACAATTTTATCCCCTCTGAAGG
TTGTTGGTGCTACCGATGAAGGTGTTATAAAGTTCAATTGGAAAGTGGAG
GAAAAACATTTAACACCTGGTGGAGGACTTCATGGTGGATTAACTGCTGG
TATCATCGATTTAACTCATGGAATTGGAATCCTTGCAGTGTCCGACTGCA
CACAAACAGCAACAACATTAGAACTTAATATCAGTTACATGCGATACGTT
CCAAATGATGAATTATTAGACATTGAATCTCGAGTGGCTAAACAAGGAAG
CAGAATTGCTTTTATGGAGACGACCATTATGGATTCAAAGGGCAGTATCA
TAGCAACGGGTAAACAAACTGCAATGTTGGCAGAATCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068354-exon-scaffold_483-1491911889:559172..559443 | TCONS_00068354-exon-scaffold_483-1491911889:559172..559443 | Clytia hemisphaerica | exon |
| TCONS_00068354-exon-scaffold_483-1510915933:559172..559443 | TCONS_00068354-exon-scaffold_483-1510915933:559172..559443 | Clytia hemisphaerica | exon |
| TCONS_00068354-exon-scaffold_483-1575043694:559172..559443 | TCONS_00068354-exon-scaffold_483-1575043694:559172..559443 | Clytia hemisphaerica | exon |
| TCONS_00068354-exon-scaffold_483-1491911889:560147..560376 | TCONS_00068354-exon-scaffold_483-1491911889:560147..560376 | Clytia hemisphaerica | exon |
| TCONS_00068354-exon-scaffold_483-1510915933:560147..560376 | TCONS_00068354-exon-scaffold_483-1510915933:560147..560376 | Clytia hemisphaerica | exon |
| TCONS_00068354-exon-scaffold_483-1575043694:560147..560376 | TCONS_00068354-exon-scaffold_483-1575043694:560147..560376 | Clytia hemisphaerica | exon |
| TCONS_00068354-exon-scaffold_483-1491911889:563472..563766 | TCONS_00068354-exon-scaffold_483-1491911889:563472..563766 | Clytia hemisphaerica | exon |
| TCONS_00068354-exon-scaffold_483-1510915933:563472..563766 | TCONS_00068354-exon-scaffold_483-1510915933:563472..563766 | Clytia hemisphaerica | exon |
| TCONS_00068354-exon-scaffold_483-1575043694:563472..563766 | TCONS_00068354-exon-scaffold_483-1575043694:563472..563766 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_483 | supercontig | scaffold_483:559172..563766 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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