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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068346 ID=TCONS_00068346|Name=TCONS_00068346|organism=Clytia hemisphaerica|type=transcript|length=1689bp
CTTGGAAGTTGTTTGAATGTTTGCATGATTCTTGACTGAAAATCGTTTGT
TTGACTGTCAAATGATGACAGTGGCGTTATTGATTTTGTTCCATCTGACA
AATGGATTTGTGATTGCACTTTATTTTGATTCCTGTTGAAGACCCATACC
TGGTTTTCATTTTACTAGATGATTATTTGGAGGTTTAGAGCTAAACTGTA
TTATTTCTACTTTTAGCATAAAAATTTAAGACAAGGATAAACTGATGGAT
AAACATAAAAGTTGTCATTGGTAGGGATATTGATAACACCATTTTTATAT
GGCTACATCTCCTATCAACCCATCTACAACACCATACATCACACCTATAC
ATCCAACTACATTTAGCTCTTCTGCTTTCATCAATGAAACAACTTCCAGA
TTTTTAAACAATTCTACTGTCTTTTTACCACCAAATACACCGCACCTTTT
GGTAAGCTCAGATGTTCAACCAATACCTTTGAAAAGCAGTAAAATAACAC
CAACCTCCTCAACTCAGGCTATTGCAGCATCAAGTTCTCTTTATaatgtt
tcaacaacaacaacaactactactactacagctgcacccaTAATAccgaa
atcaaaaaaatctttactGGTTTATTATGTGGGTATACCTATTGGTGTCA
TTGGATTGTTTATACTGATCATGATTTCGATAAAGATTTACAAGTGGTAT
AAAAGgaaaaagCTTATTCAAGAAGAATTTACACCCTGTTATACCTATGA
TCAAAGTGAAAATGAGATTGTGGATGGCGTTCTTTATCCGAGTGGAACCA
ATAGTGTGGATTTGTTACATGTTGATGTCAGCCCACCTGCTTTGAGACAT
GGAGGAGATGTTACTATGGACGAAGATACTGACGAAACACACCTCCTCTC
GCCCACTCAAGAAATGGATGACTTTGCCAGTGATACCATGCGTTGTGATA
GTGTGGCTGTTTGAAAAATACTGAATAATTGACTCTCAAAACCATGCGTT
GTTTGAAAAATGGTGAATATTGATGACTCTCAAAACTTGCAATGGATTCA
TCTCGCAAAcgaacatttttttcattatcaACCCGCTTGCAAGCTTTTGA
GATTTTgccagcagaaaaagctttggATGATTTTGCACTAAGATATTCTA
TATtctaattttatttattattttgaatttcgatttcgACTTAATAATAC
TTGTAGAAGGGCTTACCAGATGTAAGATAGTCTGCTCTGTGATTAAAAGG
GTGGAACatcaaaatacacgtttttaataagaatagtgtacttgggtgag
ggtgagcattattcttatttttctattgttctaaacaataggcctatttt
taggatttaaaaaaccttccaaaatctttttgaacaagctccaaaaatat
caaataacaatttttaaacaaCCAGCATATACTGCGTGGTAGCAAAAAAA
GCACAATGTTTTATTTCCGTGGTAGTCGGTTATTGTCTCGATTTTTGGCA
AATTGGAAAATcactgtttttttgtttttttttggaagcCCGAGTACAGT
ATTGCTTTTGAGGTATACAGCGTGTTCcgcaaaaaaagcaaaataaacca
actaaattttatatatttattcAGCGTTCTAgggtgaaaatttcattacg
aaaaagattttcgttttagagatatgaagcTTCAAGCAC Run BLAST on NCBI protein sequence of TCONS_00068346-protein >TCONS_00068346-protein ID=TCONS_00068346-protein|Name=TCONS_00068346-protein|organism=Clytia hemisphaerica|type=polypeptide|length=221bp
MATSPINPSTTPYITPIHPTTFSSSAFINETTSRFLNNSTVFLPPNTPHL
LVSSDVQPIPLKSSKITPTSSTQAIAASSSLYNVSTTTTTTTTTAAPIIP
KSKKSLLVYYVGIPIGVIGLFILIMISIKIYKWYKRKKLIQEEFTPCYTY
DQSENEIVDGVLYPSGTNSVDLLHVDVSPPALRHGGDVTMDEDTDETHLL
SPTQEMDDFASDTMRCDSVAV Run BLAST on NCBI transcript from alignment at scaffold_483:279621..283090+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068346 ID=TCONS_00068346|Name=TCONS_00068346|organism=Clytia hemisphaerica|type=transcript|length=3470bp|location=Sequence derived from alignment at scaffold_483:279621..283090+ (Clytia hemisphaerica)
CTTGGAAGTTGTTTGAATGTTTGCATGATTCTTGACTGAAAATCGTTTGT
TTGACTGTCAAATGATGACAGTGGCGTTATTGATTTTGTTCCATCTGACA
AATGGATTTGTGATTGCACTTTATTTTGATTCCTGTTGAAGACCCATACC
TGGTTTTCATTTTACTAGATGATTATTTGGAGGTTTAGAGCTAAACTGTA
TTATTTCTACTTTTAGCATAAAAATTTAAGACAAGGATAAACTGATGGAT
AAACATAAAAGTTGTCATTGGTAGGGATATTGATAACACCATTTTTATAT
GGCTACATCTCCTATCAACCCATCTACAACACCATACATCACACCTATAC
ATCCAACTACATTTAGCTCTTCTGCTTTCATCAATGAAACAACTTCCAGA
TTTTTAAACAATTCTACTGTCTTTTTACCACCAAATACACCGCACCTTTT
GGTAAGCTCAGATGTTCAACCAATACCTTTGAAAAGCAGTAAAATAACAC
CAACCTCCTCAACTCAGGCTATTGCAGCATCAAGTTCTCTTTATaatgtt
tcaacaacaacaacaactactactactacagctgcacccaTAATAccgaa
atcaaaaaaatctttactGGTTTATTATGTGGGTATACCTATTGGTGTCA
TTGGATTGTTTATACTGATCATGATTTCGGTAAGATATTGATTTTATTTC
ATGTCACACATAGTGCGGAATTgaaaggggtctgacccccccttcttggc
atccacCCTAACcttttaaaaatgcctatccccaaggattttggacaaaa
atagctaacacATATATAGGGTGAAATATCTTAGAGAGAAAacgaaataa
taaacttctttcttctgtttgactcagactactctaacagaaaacttcct
ttcgTGAAGACCTAATTTCATAGcctgtgcttgaaaataatctacaatat
atatatgtaagccccccttcCTTGCTACCTCCcctttttttcatgaaaat
ttctgacccccccccccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCTTatgaaagggggggg
gggggcaaactATGTTTTACACCCTATGATTTACCCTAGATGCGTTGGAA
TAAGGGTTATAAAATTTAACAGCATGGTTTTGGCATCTTGATATTACAGC
TTgatatcaattttaaaatttttagtttgtAAGTGATCCTAATGCGCATC
GTGCCCTTTGGCAATCAAGTGAGCATTATTTAGCCAGTTCTAGGGGATGG
GTGGCGAAAAGTCAATGTATTCGTCCCAATTTTCCTTTGCTAATTAATGG
GaacaagaaattaaaaataacaaaattatttttttatctctttCCAGATA
AAGATTTACAAGTGGTATAAAAGGTATGTCTCTCttcaaattttagtttt
taagtTCCTTTAGCTAGATATTTCAAGTTAAACTTAAAGTTTGCTAAAAA
TTATAGAATGAATTTAAGCTTGATTTTAAGCCTGGTAATCTGTTTAGCAA
ATTTATACAATAGGCAGATATTCCATAGAGAAAAATTGCTCATTTAAAGG
TAATGTAATATTCAATAAGGAGAAGCCGAGTACACAactctttgaaaaaa
gtgtgtatttttTACAGGAAAGAGTGGGTATTTTTACAGGAAAAAGTGTg
tatttttataggaaaaagCTTATTCAAGAAGAATTTACACCCTGTTATAC
CTATGATCAAAGTGAAAATGAGATTGTGGATGGCGTTCTTTATCCGAGTG
GAACCAATAGTGTGGATTTGTTACATGTTGATGTCAGCCCACCTGCTTTG
AGAGTAAGTAGATTCTTAGTAGGTTACATTTTAAAGAAATgttttaaaga
aattgaaattgtttcaaaatcttaaattaaAACTGTGTTGGAgagttttc
tgaaaattttaaaaaatactcagaagactctccagtgatgcatatcatga
attaaaacTTTTTCTAATGAATGCAAGTTATTACATTCACTTCGACATGA
ACCATCTTCAAGCTTTCCATCCCTAAATAGAGCAACGTTTTGCCCAAAGC
TACCCCCAACAATCATTTTATTCGCAAAGAATTCTCTCTTAaagactttt
tcaaatttcaaaggaTTTTTAAAGGGAACGACTCTAAAGATCATTTCAAG
TTAAATGTCTGAGGtcgatttttgtgaaaattactTTTAATACGCGTCTC
ACACCCGTAATCACGGGTCAGATATATTTAAAAACCTGCCTTCGAATGGG
AAAGTACATTTGTATAACCCTACACTGACATTTGAGTTCTAACAGCCCTC
CATCCCAGTGCTTATTTGACCCCTTTACGCTATTGATAATTCTGATTGAC
ACATAGACGGAGGAGGGTATAAGCGATTCCTCTAATTTTACGGCATTGGC
CTTTTTACGTCCCAGAATTGTTTATCAATGGTGAGCTTTAAAGATAATAA
TTTCTTATTCACGTTATATTTTTCTTAGCATGGAGGAGATGTTACTATGG
ACGAAGATACTGACGAAACACACCTCCTCTCGCCCACTCAAGAAATGGAT
GACTTTGCCAGTGATACCATGCGTTGTGATAGTGTGGCTGTTTGAAAAAT
ACTGAATAATTGACTCTCAAAACCATGCGTTGTTTGAAAAATGGTGAATA
TTGATGACTCTCAAAACTTGCAATGGATTCATCTCGCAAAcgaacatttt
tttcattatcaACCCGCTTGCAAGCTTTTGAGATTTTgccagcagaaaaa
gctttggATGATTTTGCACTAAGATATTCTATATtctaattttatttatt
attttgaatttcgatttcgACTTAATAATACTTGTAGAAGGGCTTACCAG
ATGTAAGATAGTCTGCTCTGTGATTAAAAGGGTGGAACatcaaaatacac
gtttttaataagaatagtgtacttgggtgagggtgagcattattcttatt
tttctattgttctaaacaataggcctatttttaggatttaaaaaaccttc
caaaatctttttgaacaagctccaaaaatatcaaataacaatttttaaac
aaCCAGCATATACTGCGTGGTAGCAAAAAAAGCACAATGTTTTATTTCCG
TGGTAGTCGGTTATTGTCTCGATTTTTGGCAAATTGGAAAATcactgttt
ttttgtttttttttggaagcCCGAGTACAGTATTGCTTTTGAGGTATACA
GCGTGTTCcgcaaaaaaagcaaaataaaccaactaaattttatatattta
ttcAGCGTTCTAgggtgaaaatttcattacgaaaaagattttcgttttag
agatatgaagcTTCAAGCAC Coding sequence (CDS) from alignment at scaffold_483:279621..283090+ >TCONS_00068346 ID=TCONS_00068346|Name=TCONS_00068346|organism=Clytia hemisphaerica|type=CDS|length=2664bp|location=Sequence derived from alignment at scaffold_483:279621..283090+ (Clytia hemisphaerica)
ATGGCTACATCTCCTATCAACCCATCTACAACACCATACATCACACCTAT
ACATCCAACTACATTTAGCTCTTCTGCTTTCATCAATGAAACAACTTCCA
GATTTTTAAACAATTCTACTGTCTTTTTACCACCAAATACACCGCACCTT
TTGGTAAGCTCAGATGTTCAACCAATACCTTTGAAAAGCAGTAAAATAAC
ACCAACCTCCTCAACTCAGGCTATTGCAGCATCAAGTTCTCTTTATaatg
tttcaacaacaacaacaactactactactacagctgcacccaTAATAccg
aaatcaaaaaaatctttactGGTTTATTATGTGGGTATACCTATTGGTGT
CATTGGATTGTTTATACTGATCATGATTTCGATAAAGATTTACAAGTGGT
ATAAAAGgaaaaagCTTATTCAAGAAGAATTTACACCCTGTTATACCTAT
GATCAAAGTGAAAATGAGATTGTGGATGGCGTTCTTTATCCGAGTGGAAC
CAATAGTGTGGATTTGTTACATGTTGATGTCAGCCCACCTGCTTTGAGAC
ATGGAGGAGATGTTACTATGGACGAAGATACTGACGAAACACACCTCCTC
TCGCCCACTCAAGAAATGGATGACTTTGCCAGTGATACCATGCGTTGTGA
TAGTGTGGCTGTTTGAATGGCTACATCTCCTATCAACCCATCTACAACAC
CATACATCACACCTATACATCCAACTACATTTAGCTCTTCTGCTTTCATC
AATGAAACAACTTCCAGATTTTTAAACAATTCTACTGTCTTTTTACCACC
AAATACACCGCACCTTTTGGTAAGCTCAGATGTTCAACCAATACCTTTGA
AAAGCAGTAAAATAACACCAACCTCCTCAACTCAGGCTATTGCAGCATCA
AGTTCTCTTTATaatgtttcaacaacaacaacaactactactactacagc
tgcacccaTAATAccgaaatcaaaaaaatctttactGGTTTATTATGTGG
GTATACCTATTGGTGTCATTGGATTGTTTATACTGATCATGATTTCGATA
AAGATTTACAAGTGGTATAAAAGgaaaaagCTTATTCAAGAAGAATTTAC
ACCCTGTTATACCTATGATCAAAGTGAAAATGAGATTGTGGATGGCGTTC
TTTATCCGAGTGGAACCAATAGTGTGGATTTGTTACATGTTGATGTCAGC
CCACCTGCTTTGAGACATGGAGGAGATGTTACTATGGACGAAGATACTGA
CGAAACACACCTCCTCTCGCCCACTCAAGAAATGGATGACTTTGCCAGTG
ATACCATGCGTTGTGATAGTGTGGCTGTTTGAATGGCTACATCTCCTATC
AACCCATCTACAACACCATACATCACACCTATACATCCAACTACATTTAG
CTCTTCTGCTTTCATCAATGAAACAACTTCCAGATTTTTAAACAATTCTA
CTGTCTTTTTACCACCAAATACACCGCACCTTTTGGTAAGCTCAGATGTT
CAACCAATACCTTTGAAAAGCAGTAAAATAACACCAACCTCCTCAACTCA
GGCTATTGCAGCATCAAGTTCTCTTTATaatgtttcaacaacaacaacaa
ctactactactacagctgcacccaTAATAccgaaatcaaaaaaatcttta
ctGGTTTATTATGTGGGTATACCTATTGGTGTCATTGGATTGTTTATACT
GATCATGATTTCGATAAAGATTTACAAGTGGTATAAAAGgaaaaagCTTA
TTCAAGAAGAATTTACACCCTGTTATACCTATGATCAAAGTGAAAATGAG
ATTGTGGATGGCGTTCTTTATCCGAGTGGAACCAATAGTGTGGATTTGTT
ACATGTTGATGTCAGCCCACCTGCTTTGAGACATGGAGGAGATGTTACTA
TGGACGAAGATACTGACGAAACACACCTCCTCTCGCCCACTCAAGAAATG
GATGACTTTGCCAGTGATACCATGCGTTGTGATAGTGTGGCTGTTTGAAT
GGCTACATCTCCTATCAACCCATCTACAACACCATACATCACACCTATAC
ATCCAACTACATTTAGCTCTTCTGCTTTCATCAATGAAACAACTTCCAGA
TTTTTAAACAATTCTACTGTCTTTTTACCACCAAATACACCGCACCTTTT
GGTAAGCTCAGATGTTCAACCAATACCTTTGAAAAGCAGTAAAATAACAC
CAACCTCCTCAACTCAGGCTATTGCAGCATCAAGTTCTCTTTATaatgtt
tcaacaacaacaacaactactactactacagctgcacccaTAATAccgaa
atcaaaaaaatctttactGGTTTATTATGTGGGTATACCTATTGGTGTCA
TTGGATTGTTTATACTGATCATGATTTCGATAAAGATTTACAAGTGGTAT
AAAAGgaaaaagCTTATTCAAGAAGAATTTACACCCTGTTATACCTATGA
TCAAAGTGAAAATGAGATTGTGGATGGCGTTCTTTATCCGAGTGGAACCA
ATAGTGTGGATTTGTTACATGTTGATGTCAGCCCACCTGCTTTGAGACAT
GGAGGAGATGTTACTATGGACGAAGATACTGACGAAACACACCTCCTCTC
GCCCACTCAAGAAATGGATGACTTTGCCAGTGATACCATGCGTTGTGATA
GTGTGGCTGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00068346-exon-scaffold_483-1491911889:279621..280299 | TCONS_00068346-exon-scaffold_483-1491911889:279621..280299 | Clytia hemisphaerica | exon |
| TCONS_00068346-exon-scaffold_483-1510915933:279621..280299 | TCONS_00068346-exon-scaffold_483-1510915933:279621..280299 | Clytia hemisphaerica | exon |
| TCONS_00068346-exon-scaffold_483-1575043694:279621..280299 | TCONS_00068346-exon-scaffold_483-1575043694:279621..280299 | Clytia hemisphaerica | exon |
| TCONS_00068346-exon-scaffold_483-1491911889:281118..281143 | TCONS_00068346-exon-scaffold_483-1491911889:281118..281143 | Clytia hemisphaerica | exon |
| TCONS_00068346-exon-scaffold_483-1510915933:281118..281143 | TCONS_00068346-exon-scaffold_483-1510915933:281118..281143 | Clytia hemisphaerica | exon |
| TCONS_00068346-exon-scaffold_483-1575043694:281118..281143 | TCONS_00068346-exon-scaffold_483-1575043694:281118..281143 | Clytia hemisphaerica | exon |
| TCONS_00068346-exon-scaffold_483-1491911889:281432..281573 | TCONS_00068346-exon-scaffold_483-1491911889:281432..281573 | Clytia hemisphaerica | exon |
| TCONS_00068346-exon-scaffold_483-1510915933:281432..281573 | TCONS_00068346-exon-scaffold_483-1510915933:281432..281573 | Clytia hemisphaerica | exon |
| TCONS_00068346-exon-scaffold_483-1575043694:281432..281573 | TCONS_00068346-exon-scaffold_483-1575043694:281432..281573 | Clytia hemisphaerica | exon |
| TCONS_00068346-exon-scaffold_483-1491911889:282249..283090 | TCONS_00068346-exon-scaffold_483-1491911889:282249..283090 | Clytia hemisphaerica | exon |
| TCONS_00068346-exon-scaffold_483-1510915933:282249..283090 | TCONS_00068346-exon-scaffold_483-1510915933:282249..283090 | Clytia hemisphaerica | exon |
| TCONS_00068346-exon-scaffold_483-1575043694:282249..283090 | TCONS_00068346-exon-scaffold_483-1575043694:282249..283090 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_483 | supercontig | scaffold_483:279621..283090 + |
Blast
The following BLAST results are available for this feature:
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