TCONS_00068345 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068345
Unique NameTCONS_00068345
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1373

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068345 ID=TCONS_00068345|Name=TCONS_00068345|organism=Clytia hemisphaerica|type=transcript|length=1373bp
aggcttgaaaatcaaaaagttaagaaaatccgaaggcttctataattttg
gatgttcttataaaaaaaacgtgtacccttttacttttaaagtttttacc
TTACCACGAGTATAGCCATCCATATCATATAAATCAAGACCTTAAATAAT
AAAGTTATAAAAATCATTGCCCTAAACCACCTaaataatctttaaatttc
ACAATAGCTTGATAATAGTAATGTCATCATAAGTAATGGTTTTGGATTGT
CTTATTTGCGACGGACCATCATCAAAGAGGATCTTAATCGACGGCCGGAA
CCATTCCAAGAGAAAGCTGTTTTTGCATCATTCAGGTTTTCGAACTCATC
ATACGCACCATTTAAATTCGAAGATTCATACCTGTTCGAAGTACTTTTAC
AATCATCATACCACCATGCACCATGCATTTCTGAAGCACAATCAACAGAT
GTATTTGGGTCTTGATCTTTGTCATAAGTACTGAACTTCATCCTGTCGTG
TTTTTCCATTCCGCTATTTCCTTTTTGAAGTCCAGAAACATGAAGTTTAT
ATCCAGTGGATTCACAACCAATATAAAAATTTGCATAACGCATGAGGGAG
TACCAGCCGGAAGACTTAGTTATCATACCTACCCAGAGTTCCGAGCCACT
GGAGATAGCTTGTGCAGTCAAACGGtataaattttcatttcccAGCCAAT
GTTCACCTTCAAGTTTCCCAAAACCGTGTTTATATTCTTGCCAGGAGCGA
TAAAAATTCTCCGATCCGTCGAAGCGACGCTGAAATACCGTCCAACCACC
ACGATTAAGAGTCTGCACACAAGACACTTGAACGACATGGCCAATAACAT
TCATACTAACACGATAAAGGCCATTTATCCTCTCTCCTTTGTCATAATGT
TCCTTGCAATCTCTTCTAACAGGCTTTTCACGGCAATCACAAAAGTATTT
TACAGGTGAGAATGAGTGTGGTGAGTATTTTANCTAACAGGCTTTTCACG
GCAATCACAGAAATAATTTACAGGTAAGAGGTAGTATGCGTCATTTACTA
AACTGTAATCTTCGACGCACAAACAGGATCCACAACGATTCGAATTGATT
TGACAAATTCCATTTCGTGTTTGCActcttgatttcaattctttgattTC
AGCTTTTTCGTTGGCAACTTCAGTCtgaagtttttgaatttgagaCTGCA
GCAGGTTGATGTCGCTAGATGCGTCCAAAAGTGGAAGCGAAACGAGGAAG
ACCCAGAACAGTTTCATCTTGAGAACTGATAGTTACTCAATACTGATTGA
CGAATGATGAAAAAATAACTTTAGCTTTTATTTTATATTCACGACACCTC
TAGACTGAATATCCGAAGCAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_483:230459..231831+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068345 ID=TCONS_00068345|Name=TCONS_00068345|organism=Clytia hemisphaerica|type=transcript|length=1373bp|location=Sequence derived from alignment at scaffold_483:230459..231831+ (Clytia hemisphaerica)
aggcttgaaaatcaaaaagttaagaaaatccgaaggcttctataattttg
gatgttcttataaaaaaaacgtgtacccttttacttttaaagtttttacc
TTACCACGAGTATAGCCATCCATATCATATAAATCAAGACCTTAAATAAT
AAAGTTATAAAAATCATTGCCCTAAACCACCTaaataatctttaaatttc
ACAATAGCTTGATAATAGTAATGTCATCATAAGTAATGGTTTTGGATTGT
CTTATTTGCGACGGACCATCATCAAAGAGGATCTTAATCGACGGCCGGAA
CCATTCCAAGAGAAAGCTGTTTTTGCATCATTCAGGTTTTCGAACTCATC
ATACGCACCATTTAAATTCGAAGATTCATACCTGTTCGAAGTACTTTTAC
AATCATCATACCACCATGCACCATGCATTTCTGAAGCACAATCAACAGAT
GTATTTGGGTCTTGATCTTTGTCATAAGTACTGAACTTCATCCTGTCGTG
TTTTTCCATTCCGCTATTTCCTTTTTGAAGTCCAGAAACATGAAGTTTAT
ATCCAGTGGATTCACAACCAATATAAAAATTTGCATAACGCATGAGGGAG
TACCAGCCGGAAGACTTAGTTATCATACCTACCCAGAGTTCCGAGCCACT
GGAGATAGCTTGTGCAGTCAAACGGtataaattttcatttcccAGCCAAT
GTTCACCTTCAAGTTTCCCAAAACCGTGTTTATATTCTTGCCAGGAGCGA
TAAAAATTCTCCGATCCGTCGAAGCGACGCTGAAATACCGTCCAACCACC
ACGATTAAGAGTCTGCACACAAGACACTTGAACGACATGGCCAATAACAT
TCATACTAACACGATAAAGGCCATTTATCCTCTCTCCTTTGTCATAATGT
TCCTTGCAATCTCTTCTAACAGGCTTTTCACGGCAATCACAAAAGTATTT
TACAGGTGAGAATGAGTGTGGTGAGTATTTTANCTAACAGGCTTTTCACG
GCAATCACAGAAATAATTTACAGGTAAGAGGTAGTATGCGTCATTTACTA
AACTGTAATCTTCGACGCACAAACAGGATCCACAACGATTCGAATTGATT
TGACAAATTCCATTTCGTGTTTGCActcttgatttcaattctttgattTC
AGCTTTTTCGTTGGCAACTTCAGTCtgaagtttttgaatttgagaCTGCA
GCAGGTTGATGTCGCTAGATGCGTCCAAAAGTGGAAGCGAAACGAGGAAG
ACCCAGAACAGTTTCATCTTGAGAACTGATAGTTACTCAATACTGATTGA
CGAATGATGAAAAAATAACTTTAGCTTTTATTTTATATTCACGACACCTC
TAGACTGAATATCCGAAGCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042657XLOC_042657Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068345-exon-scaffold_483-1491911889:230459..231831TCONS_00068345-exon-scaffold_483-1491911889:230459..231831Clytia hemisphaericaexon
TCONS_00068345-exon-scaffold_483-1510915933:230459..231831TCONS_00068345-exon-scaffold_483-1510915933:230459..231831Clytia hemisphaericaexon
TCONS_00068345-exon-scaffold_483-1575043694:230459..231831TCONS_00068345-exon-scaffold_483-1575043694:230459..231831Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_483supercontigscaffold_483:230459..231831 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.280589	0.320285	0.0923442	0.168814	0.920886	0.228548	0.42826	0.294609	0.384436	0.37201	0.152646	0.740859	6.27217	5.10976	12.0582	21.0131	2.39862	2.44244	2.68739	2.81617	1.6971	1.71599	7.02079	7.2356	3.3586	6.62449	0.438157	0.165022	22.1717	28.6084
Blast
[Close]
BLAST of TCONS_00068345 vs. Swiss-Prot (Human)
Match: FCN1 (Ficolin-1 OS=Homo sapiens GN=FCN1 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.880e-33
Identity = 78/197 (39.59%), Postives = 110/197 (55.84%), Query Frame = -1 
Query:  351 CREKPVRRDCKEHYDKGERINGLYRVSMNVIGHVVQVSCVQTLNRGGWTVFQRRFDGSENFYRSWQEYKHGFGKLEGEHWLGNENLYRLTAQAISSGSELWVGMITKSSGWYSLMRYANFYIGCESTGYKLHVSGLQKGNSG--MEKHDRMKFSTYDKDQDPNTSVDCASEMHGAWWYDDCKSTSNRYESSNLNGAY 935
            C   P  R+CK+  D+G  ++G + + +      + V C    + GGWTVFQRR DGS +FYR W  YK GFG   GE WLGN+N++ LTAQ     SEL V ++    G +   +Y +F +  E+  YKL +     G++G  +  H+   FST D+D D ++S +CA +  GAWWY DC        +SNLNG Y
Sbjct:  111 CATGP--RNCKDLLDRGYFLSGWHTIYLPDC-RPLTVLCDMDTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGSQLGEFWLGNDNIHALTAQG---SSELRVDLV-DFEGNHQFAKYKSFKVADEAEKYKLVLGAFVGGSAGNSLTGHNNNFFSTKDQDNDVSSS-NCAEKFQGAWWYADC-------HASNLNGLY 292
The following BLAST results are available for this feature:
BLAST of TCONS_00068345 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FCN14.880e-3339.59Ficolin-1 OS=Homo sapiens GN=FCN1 PE=1 SV=2[more]
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