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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068340 ID=TCONS_00068340|Name=TCONS_00068340|organism=Clytia hemisphaerica|type=transcript|length=2942bp
attttatttttcatatatttatTTACATGTAACAATTCAACATCAGAAAG
AAATGATTGCATCATTAATTTTAGACAtccgaagaagaaaaaattaacgc
TTTATTCCGTCTAAAAAATTAAGCGTTAATTTTAATTcttgtgatttaaa
aaaaatgcaaacatcATAATAATAGTACAATAGAGTTTTCAGAAAATAAT
CATTAAGTTATACATcttcaggaagaaaaaaaaacagggaaaagtaaaaa
acatttaaattacTTATAAATCAAAAGATAATATTCTAGAATGAAGTAGA
CAAGTAAGCCCTAAAATAAGTCAACAGAAATCATTCTGCCATGCATGTAC
TtgaaccatagtcattataaaaaaccccaaTCTGGCAATgtagttttagc
tttttgttaaattttcttttgttacaaacaaaagacaagttgcgatttgc
atactttttgatcacgttaccaaaatctgctcttgggattggtctatttt
ctaatcacatgatcaaaataatcacatttgcaaaataaattgattttggt
acaTAAGCTCTATCTNagtctattttctaatcacatgatcaaaataatca
catttgcaaaataaattgatTTGGTACATAAGCTCTAtctcttttaacaa
taaaaggaaacaaaagccttccagaccagtgtttttataatgggaagatc
atttcaaatttccatCCACGTAAACGTGGTTATTTAGTCAAATCATCGAC
AAAGATTTAGGACATACAACTTAAAGTTTATAGTTCAAAACTGCCTGCTT
CATCAACCAAACAAATAATTAACAATAAGTTTAAAGTCATAACATAAagg
gtaaaaaatattttggaaatttcttttagaaactaaaaaaaagggaaaaa
ttttgTAGGTATGAACagtaaaaaataaagttttattAGTATTTACATTA
TTTGCATACAAGTTAATGATAATGATAATATCAGAAGCAtaacagaaaaa
atttattatgGAAGGATTCGCCAAGGTAAATTTCATTATACCTAGCTGAT
AAATTTGGATAGGGTAAAAATTGACAGAAATTAATTTCTTAGGAGTAATC
ATAGCGGCGTAGAAGANGGGGTAAAAATTGACAGAAATTTATTTCTTAGG
AGTAATCATAGCGGCGTAGAAAACTGATGGTGTAGACAAAGCTGTAAAAT
TTTAAAGGCTTgaaaacaaaccaataaaaGATGGGAGCCAACGAAAAAGA
GGGCATAGGACAGAAAAAATCCATTCATGAACATAACAAAAGATAGtaaa
tataaacaaagaaacgaactaaatttaaaaatagtCATCGTATTTTAgat
cataaaaaataataatgcaGAAAGAacaaaacgaacaaaaaaataCTTGT
TATGGTATATAATTAATACAcaattttcaatactttttaatataaaataa
atgttctgatataaaaaactttttctaccTGCAATCCATTCAACACCAGG
gaatttttcgaatgtttattaTCCTCTGGATGAACCAAAGTTTTCAGTGA
CCTAATCCTTGCATAAGGAAATATGGGTCGAACGAAGTAAACAAATTGAA
GCCACATAGGCCAATAAACAAAATGGTAGCATTTCAGTGACCTAATCCTT
GCATAAGGAAATATGGGTCGAACGAAGTAAACAAATTGAAGCCACATAGT
CTCATAAACAAAATGGTAGTATTTCTTTATCAATAGAACAAACGTAGTAA
CCATCACAGcatcatcaaaaatattttgactggTGACTTTTCCATTGTGA
ACAGGACATAAGAATAGGTTTCAAATGTCGAATGCAGAAAAATATAGCTT
ACAAGCTAACTGTGTCCAAAAAAACATAAGATTTGGAGCGAATCATGCTA
ACAAGGAGATTTCCTTCGGAACTTTGGAATCTCTCCCATGgtacagggct
cgaaataacgatatttAGGTGGTCGGACACACTGTccaatcaaaaattga
tttgggtcggacatgtcctaaggcttttaaaataaaatgggtcggacatg
tccgattgatttttatgtggggtatacttcaagtctaatacaagcttctg
atagaattttacattgatcacgaagaagctaaacaaatgtcaattaatgg
tcagaagccaatgatttttacttgaagcatgctttcatttgttgagaaaa
agcatCACACAAAATGAATATCTAACACTAATGAAAGcaactttgagagt
ttttgtgtgtaaataaagaagttactaattctatgtaaattacaatttct
tttggaaatttcacaacgcCTCTGACAAATTTTTCGAAGGCACCGAAAgt
aattgggtcggacatgatgtccgactagAATCAATTTGGTTCGGACATTT
cagcaattgggtcggacaatgtccgatgtccgaccgttatttcgagccct
gatGGTAATCTCATTATAACCACCATCTACACCACTTCGTATTAAAACTC
TTTCATCAAGTTTGAAGAGGAATTTCTTGCTCTTCCTCCTTTGGCGTGAT
AGAGCGTGACGGAGGCGGTGAATTTGTGGGCGTCATAGAATTCTCATCTT
CCATTGGTGAGTAAACCATTTCGTCTGGTTCTTCAAGTCTGAAAGTAGAG
TTCaatttgaaaattagttctaGGGTAAAATTTCAATACACCGAAGTCAC
CAGAACTCGGACCTCTCCTCGAATgtttccttaattcgaacaagaTTCAT
TGTCCCTTCAGCCACATAAATCtgtaattcaaaatttcaatttcccgTTC
GTGTGCTCGACAGTATTGAGTAATGTTGCAAACTCGTGCGTAGATGACAT
GGGCAAGCAATAGTCTCAGAGATAACTTTGACAAAAACCTGATCAGAAAA
ACTCAATAGTTTCTGAAAGGAGAATAAATTCTTCAGACCAAG Run BLAST on NCBI transcript from alignment at scaffold_483:2977..5974+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068340 ID=TCONS_00068340|Name=TCONS_00068340|organism=Clytia hemisphaerica|type=transcript|length=2998bp|location=Sequence derived from alignment at scaffold_483:2977..5974+ (Clytia hemisphaerica)
attttatttttcatatatttatTTACATGTAACAATTCAACATCAGAAAG
AAATGATTGCATCATTAATTTTAGACAtccgaagaagaaaaaattaacgc
TTTATTCCGTCTAAAAAATTAAGCGTTAATTTTAATTcttgtgatttaaa
aaaaatgcaaacatcATAATAATAGTACAATAGAGTTTTCAGAAAATAAT
CATTAAGTTATACATcttcaggaagaaaaaaaaacagggaaaagtaaaaa
acatttaaattacTTATAAATCAAAAGATAATATTCTAGAATGAAGTAGA
CAAGTAAGCCCTAAAATAAGTCAACAGAAATCATTCTGCCATGCATGTAC
TtgaaccatagtcattataaaaaaccccaaTCTGGCAATgtagttttagc
tttttgttaaattttcttttgttacaaacaaaagacaagttgcgatttgc
atactttttgatcacgttaccaaaatctgctcttgggattggtctatttt
ctaatcacatgatcaaaataatcacatttgcaaaataaattgattttggt
acaTAAGCTCTATCTNagtctattttctaatcacatgatcaaaataatca
catttgcaaaataaattgatTTGGTACATAAGCTCTAtctcttttaacaa
taaaaggaaacaaaagccttccagaccagtgtttttataatgggaagatc
atttcaaatttccatCCACGTAAACGTGGTTATTTAGTCAAATCATCGAC
AAAGATTTAGGACATACAACTTAAAGTTTATAGTTCAAAACTGCCTGCTT
CATCAACCAAACAAATAATTAACAATAAGTTTAAAGTCATAACATAAagg
gtaaaaaatattttggaaatttcttttagaaactaaaaaaaagggaaaaa
ttttgTAGGTATGAACagtaaaaaataaagttttattAGTATTTACATTA
TTTGCATACAAGTTAATGATAATGATAATATCAGAAGCAtaacagaaaaa
atttattatgGAAGGATTCGCCAAGGTAAATTTCATTATACCTAGCTGAT
AAATTTGGATAGGGTAAAAATTGACAGAAATTAATTTCTTAGGAGTAATC
ATAGCGGCGTAGAAGANGGGGTAAAAATTGACAGAAATTTATTTCTTAGG
AGTAATCATAGCGGCGTAGAAAACTGATGGTGTAGACAAAGCTGTAAAAT
TTTAAAGGCTTgaaaacaaaccaataaaaGATGGGAGCCAACGAAAAAGA
GGGCATAGGACAGAAAAAATCCATTCATGAACATAACAAAAGATAGTTAA
TATAAACAAAGAAACgaactaaatttaaaaatagtNACATAACAAAAGAT
AGtaaatataaacaaagaaacgaactaaatttaaaaatagtCATCGTATT
TTAgatcataaaaaataataatgcaGAAAGAacaaaacgaacaaaaaaat
aCTTGTTATGGTATATAATTAATACAcaattttcaatactttttaatata
aaataaatgttctgatataaaaaactttttctaccTGCAATCCATTCAAC
ACCAGGgaatttttcgaatgtttattaTCCTCTGGATGAACCAAAGTTTT
CAGTGACCTAATCCTTGCATAAGGAAATATGGGTCGAACGAAGTAAACAA
ATTGAAGCCACATAGGCCAATAAACAAAATGGTAGCATTTCAGTGACCTA
ATCCTTGCATAAGGAAATATGGGTCGAACGAAGTAAACAAATTGAAGCCA
CATAGTCTCATAAACAAAATGGTAGTATTTCTTTATCAATAGAACAAACG
TAGTAACCATCACAGcatcatcaaaaatattttgactggTGACTTTTCCA
TTGTGAACAGGACATAAGAATAGGTTTCAAATGTCGAATGCAGAAAAATA
TAGCTTACAAGCTAACTGTGTCCAAAAAAACATAAGATTTGGAGCGAATC
ATGCTAACAAGGAGATTTCCTTCGGAACTTTGGAATCTCTCCCATGgtac
agggctcgaaataacgatatttAGGTGGTCGGACACACTGTccaatcaaa
aattgatttgggtcggacatgtcctaaggcttttaaaataaaatgggtcg
gacatgtccgattgatttttatgtggggtatacttcaagtctaatacaag
cttctgatagaattttacattgatcacgaagaagctaaacaaatgtcaat
taatggtcagaagccaatgatttttacttgaagcatgctttcatttgttg
agaaaaagcatCACACAAAATGAATATCTAACACTAATGAAAGcaacttt
gagagtttttgtgtgtaaataaagaagttactaattctatgtaaattaca
atttcttttggaaatttcacaacgcCTCTGACAAATTTTTCGAAGGCACC
GAAAgtaattgggtcggacatgatgtccgactagAATCAATTTGGTTCGG
ACATTTcagcaattgggtcggacaatgtccgatgtccgaccgttatttcg
agccctgatGGTAATCTCATTATAACCACCATCTACACCACTTCGTATTA
AAACTCTTTCATCAAGTTTGAAGAGGAATTTCTTGCTCTTCCTCCTTTGG
CGTGATAGAGCGTGACGGAGGCGGTGAATTTGTGGGCGTCATAGAATTCT
CATCTTCCATTGGTGAGTAAACCATTTCGTCTGGTTCTTCAAGTCTGAAA
GTAGAGTTCaatttgaaaattagttctaGGGTAAAATTTCAATACACCGA
AGTCACCAGAACTCGGACCTCTCCTCGAATgtttccttaattcgaacaag
aTTCATTGTCCCTTCAGCCACATAAATCtgtaattcaaaatttcaatttc
ccgTTCGTGTGCTCGACAGTATTGAGTAATGTTGCAAACTCGTGCGTAGA
TGACATGGGCAAGCAATAGTCTCAGAGATAACTTTGACAAAAACCTGATC
AGAAAAACTCAATAGTTTCTGAAAGGAGAATAAATTCTTCAGACCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068340-exon-scaffold_483-1491911889:2977..4258 | TCONS_00068340-exon-scaffold_483-1491911889:2977..4258 | Clytia hemisphaerica | exon |
| TCONS_00068340-exon-scaffold_483-1510915933:2977..4258 | TCONS_00068340-exon-scaffold_483-1510915933:2977..4258 | Clytia hemisphaerica | exon |
| TCONS_00068340-exon-scaffold_483-1575043694:2977..4258 | TCONS_00068340-exon-scaffold_483-1575043694:2977..4258 | Clytia hemisphaerica | exon |
| TCONS_00068340-exon-scaffold_483-1491911889:4315..5974 | TCONS_00068340-exon-scaffold_483-1491911889:4315..5974 | Clytia hemisphaerica | exon |
| TCONS_00068340-exon-scaffold_483-1510915933:4315..5974 | TCONS_00068340-exon-scaffold_483-1510915933:4315..5974 | Clytia hemisphaerica | exon |
| TCONS_00068340-exon-scaffold_483-1575043694:4315..5974 | TCONS_00068340-exon-scaffold_483-1575043694:4315..5974 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_483 | supercontig | scaffold_483:2977..5974 + |
Blast
The following BLAST results are available for this feature:
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