TCONS_00068338 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068338
Unique NameTCONS_00068338
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length597

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068338 ID=TCONS_00068338|Name=TCONS_00068338|organism=Clytia hemisphaerica|type=transcript|length=597bp
caaaaatctgcgGAAGGATGAgaaagaagatgaaaattttatcattgcat
CAACAGCATCAGAGTCGTTGGGTTATTCCCATAAAAGTTTAATCTCTCGG
CTTCTACAATCCTGTTATGGtgaatgaaaattatcaaatcatttctttgc
tttggtttggATCCTAGCCATAATAGTGCTGATGATATACAAACTTGGTT
TGgactttttgtatgtttttggGATGGCAACGAATATCTTTTGGATATGA
CTTTAAACCTAGAAGAATTTATCCCTCGCTTATTCCAGTGgaaagaagaa
ctgtttgtttgttattgtttttattggcgGTTCGACGTGGTTTGTGATCG
CTTGTTTGAAAATGTGACATAAATTTAATTGTAGAATGTAAATTGACATA
CGATTGAAAGTaaactgaaatttgattgtattcgattcgAAAGAATTTAA
TGAATGTTGCTGGGTGTGGAAATTATTTTCTTCAGCTCTCAGAGCACCAG
TGACCATTGTCATTGGCAAATCTTGACATATCAAAACTTGAcactatttt
tttgattttgatttaaaacttATGCGCTGAAGTTGATACAATGACAG
Run BLAST on NCBI

transcript from alignment at scaffold_482:506694..507290

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068338 ID=TCONS_00068338|Name=TCONS_00068338|organism=Clytia hemisphaerica|type=transcript|length=597bp|location=Sequence derived from alignment at scaffold_482:506694..507290 (Clytia hemisphaerica)
CTGTCATTGTATCAACTTCAGCGCATaagttttaaatcaaaatcaaaaaa
atagtgTCAAGTTTTGATATGTCAAGATTTGCCAATGACAATGGTCACTG
GTGCTCTGAGAGCTGAAGAAAATAATTTCCACACCCAGCAACATTCATTA
AATTCTTTcgaatcgaatacaatcaaatttcagtttACTTTCAATCGTAT
GTCAATTTACATTCTACAATTAAATTTATGTCACATTTTCAAACAAGCGA
TCACAAACCACGTCGAACcgccaataaaaacaataacaaacaaacagttc
ttctttcCACTGGAATAAGCGAGGGATAAATTCTTCTAGGTTTAAAGTCA
TATCCAAAAGATATTCGTTGCCATCccaaaaacatacaaaaagtcCAAAC
CAAGTTTGTATATCATCAGCACTATTATGGCTAGGATccaaaccaaagca
aagaaatgatttgataattttcattcaCCATAACAGGATTGTAGAAGCCG
AGAGATTAAACTTTTATGGGAATAACCCAACGACTCTGATGCTGTTGatg
caatgataaaattttcatcttctttcTCATCCTTCcgcagatttttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042653XLOC_042653Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068338-exon-scaffold_482-1491911889:506694..507290TCONS_00068338-exon-scaffold_482-1491911889:506694..507290Clytia hemisphaericaexon
TCONS_00068338-exon-scaffold_482-1510915933:506694..507290TCONS_00068338-exon-scaffold_482-1510915933:506694..507290Clytia hemisphaericaexon
TCONS_00068338-exon-scaffold_482-1575043694:506694..507290TCONS_00068338-exon-scaffold_482-1575043694:506694..507290Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_482supercontigscaffold_482:506694..507290 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.128364	0.759022	0	0.146864	2.30584	1.79626	0.814544	0.38335	0.272865	0.61316	1.15442	0.188269	0.458711	0.262197	0	0.258153	0.224441	0.0768382	0.10572	0.117091	0.167475	0.567853	0.363911	0.318113	5.18665	6.54547	0	0.267616	0.115482	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068338 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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