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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068336 ID=TCONS_00068336|Name=TCONS_00068336|organism=Clytia hemisphaerica|type=transcript|length=2953bp
gtctgaatcgcagacctctacaaaaccccaggtagtataggtctgcttaa
tgatctaccaaccgctttccggttcgcaaaggaaatcttggcgagtTAAT
AATTTGATTGATATTGATTTTTTTTTTTTATCGAAAACGGTTAAAGATGG
CGGACGGTCATGCTGCGGAGAAGAAAAGAATCCGGCGAGAACAGTAAACC
AAGAAGAGTTAAAAATCTGGGATATTGGAAAGAAATCTTCAAGAAAGCAT
CGTGATACAACCAAAGTCTTCCGTGTGTCAAAAGCAGAACTTGCAGAACA
AGCAGAACTTGCCTTCTTTTTCGCAAAACATTTATTCCGTCACAATCCGA
AGTGGTGCTAGACAAGGTCGAAAAATCCTGAAGAAAAGACTACCGCAGTC
AAGGTAGCGTGAGAGTGAGGGCGAACGTGTACCTCGAAGAAAAGACGCCC
GCAGTCAAGGGTGCAGAGGGTCAGTTGGACTGACAGGCTCGAATATTAAG
CCCGAAGAAAAATCCTCTGCGGCCAGGAGGTAGACGCGTCTCGCCGAACG
AGTGAAGAGTCTAGAATACACCACACTTTACCCTGTCTTGCCTCAGAAAT
GGCGACAGGATGTGAAAAAGACGAGGTCCGTGACGAATCGACATCTGGTC
CAGGCCTGAAGATAAGTGAAAATACGAAGAATCTTGCTTGTTCCTCGACA
AAGACGATACAACCAGCGAAATCGTTCTTTCAGCTATTTTCCGAAGCAAT
AGCGAAACCTCGACTGCAGGAACAAGAAGTATCACCAAACAACAAGAACC
TCCCCTTATCCCAACCAAGACAAAATCATTCAGAAACCTACTCATGTGAT
GTATGTGGGAAAGTATTTCAAAACAAGGGTGGACGGACAAGACATAGAaa
caaatgtgtcaaaaagCAAGAAGACATTCCAGCGCCAACGACAATTTCAC
CAtcagaaaaagtgacgtcagaaAACTCAACCAACAATGACGTAAACGAG
AATGTAAAAGCTACCCATGATGCGGAACTCAACCCATCCAATACGAATGA
ACTTAACAACGAACCACAACTATGGGGTCCACACACAAGCGAAGATCTAT
CACAAATTCTCAGCGCAACATACAACGAAACAACCAAATGGAAGAAAAAT
TTGTTCAACCTCCCCAGTGGTGCTGCCGGCAAGCGCTTTGTAGAAGAATG
CACCCGCTTGATCAATGAATGGAACAACAAATCTACTCTATCGAACATCG
CTCTCAAAGCTCTGTTTATCATGCCCTGTCTCTTGCTACAAAAACCTTCC
AAGTCTTCGAAATCCAAAGATCACATCAAATTTTTGGACCGACGACTGAA
TCTTTGGGAGCAGGGTGATTTTGACGAGCTGACAAGAGAAAGCAGAGCTA
TCCAAAATCNTTGTCTTTTGCTACAAAAACCTTCCAAGTCATCGAAATCC
AAAGATCACATCAAATTTTTGGACCGACGACTGAATCTTTGGGAGCAGGG
TGATTTTGACGAGCTGACAAGAGAAAGCAGAGCCATCCAAAATCGAATTC
TTAGCTCCACCACCAAGAAGATATCCACGATCAAAAAACGATTCAGTGAT
CTGATGTTCCTTGGTAAAGTCAACGCTGCATTAAAACTCTTGTCAAATGA
AAGCTCGACTGGTCTGGTTCCGATCAATGACCAGATCATCAACACACTTC
AAGAGAAGCACCCACAAGCACAACCCAAATTTGACGATCTTCTTCTTGAA
GGTCCAGTGTTCGATGTTCATCCCCTAACGTTTCATGTGATTGACGCAGA
ACTGATTCAGAAGATGGCGGCTAAAACAAAAGGGTCATCGGGGCCCTCCC
AACTAGACTCAAGCATGTGGCATCGATTGTtgctttcaaaaagttttggt
gACCGCTCACACGATCTGGCGAAAGCTATCGCCAAAATGGCCATCACGAT
GTGCACCGAAAAATGTGATAAAGAGAATGGCCGTGACATGGAGGCTTTTC
TTTCGTGCACTCTCGTACCACTCAACAAGAATCCAGGTGTACGTCCCATT
GGCATCGGTGAAGTACTTAGAAGGATTGTTGGGAAATCAATAACAACAAT
TTTTAAGAAAGACATACAAGATGCTTCTGGAAACCTACAACTATGTGCAG
GACAACTCGGAGGTTGCGAGACTGCTGTTCATGCAATGGCTGATATCTAC
AACGACGTTGAAACTGAAGCTGTTCTTCTGGTGGATGCAAGCAACGCGTT
CAACAGCATTAATCGTGCCGTCATGATCCAGAACATAAAGATAATTTGTC
CACATCTAGNCGTCAAAAATTCAACTACATATATTCTGTACGGTCAAAGA
CCTTGACGAATACCTGATACCACTTGAAAACGTCATCAGATTCCACTTGA
TTCCTTGATTCCCGCCTTCTGCGATGGAAGACAATGCAATGATACTGAAC
GTCGCTTGATGGCTTTGCCGACAAAATTCGGGGGACTTGGTATCATAAAT
GTAATAGAAGAAGCGAAATTCCAACACAAAACGAGTCTAAGTGCAACGGC
CGAGTTACGAGATCGTGTCGTAAAACAATGTGAAGAGCCCGTTGATTATA
CAAGCTCGAtttcaataatcaaatcaagaaaaaaccAACGACTGAAGGAC
TATGAGAAAACCCTTCGGGAAATTGAGCCATCTTTACCATCCATTGAACG
CAAAGCACTGGAAATTGCTCAATGTCCGGGTGCTTCATCGTGGCTGACGA
CTCTTCCTTTGAGGgaggaaaatttcatattgaACAAGCAAGAATTCTTC
GATGCGATTTTCATGCGGTACGGTTGGCAGATGAGGAGACTACCGGTCAA
ATGTGCATGCCAAGCATCCTTCTCCATCGAACATGCACTTTCTTGTCACC
TCGGTGGTTACGTCATTCATCGTCACAACAACATCCGTGATGCGTTGGCG
ATG Run BLAST on NCBI protein sequence of TCONS_00068336-protein >TCONS_00068336-protein ID=TCONS_00068336-protein|Name=TCONS_00068336-protein|organism=Clytia hemisphaerica|type=polypeptide|length=585bp
MATGCEKDEVRDESTSGPGLKISENTKNLACSSTKTIQPAKSFFQLFSEA
IAKPRLQEQEVSPNNKNLPLSQPRQNHSETYSCDVCGKVFQNKGGRTRHR
NKCVKKQEDIPAPTTISPSEKVTSENSTNNDVNENVKATHDAELNPSNTN
ELNNEPQLWGPHTSEDLSQILSATYNETTKWKKNLFNLPSGAAGKRFVEE
CTRLINEWNNKSTLSNIALKALFIMPCLLLQKPSKSSKSKDHIKFLDRRL
NLWEQGDFDELTRESRAIQNXCLLLQKPSKSSKSKDHIKFLDRRLNLWEQ
GDFDELTRESRAIQNRILSSTTKKISTIKKRFSDLMFLGKVNAALKLLSN
ESSTGLVPINDQIINTLQEKHPQAQPKFDDLLLEGPVFDVHPLTFHVIDA
ELIQKMAAKTKGSSGPSQLDSSMWHRLLLSKSFGDRSHDLAKAIAKMAIT
MCTEKCDKENGRDMEAFLSCTLVPLNKNPGVRPIGIGEVLRRIVGKSITT
IFKKDIQDASGNLQLCAGQLGGCETAVHAMADIYNDVETEAVLLVDASNA
FNSINRAVMIQNIKIICPHLXVKNSTTYILYGQRP Run BLAST on NCBI transcript from alignment at scaffold_482:474163..477115 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068336 ID=TCONS_00068336|Name=TCONS_00068336|organism=Clytia hemisphaerica|type=transcript|length=2953bp|location=Sequence derived from alignment at scaffold_482:474163..477115 (Clytia hemisphaerica)
CATCGCCAACGCATCACGGATGTTGTTGTGACGATGAATGACGTAACCAC
CGAGGTGACAAGAAAGTGCATGTTCGATGGAGAAGGATGCTTGGCATGCA
CATTTGACCGGTAGTCTCCTCATCTGCCAACCGTACCGCATGAAAATCGC
ATCGAAGAATTCTTGCTTGTtcaatatgaaattttcctcCCTCAAAGGAA
GAGTCGTCAGCCACGATGAAGCACCCGGACATTGAGCAATTTCCAGTGCT
TTGCGTTCAATGGATGGTAAAGATGGCTCAATTTCCCGAAGGGTTTTCTC
ATAGTCCTTCAGTCGTTggttttttcttgatttgattattgaaaTCGAGC
TTGTATAATCAACGGGCTCTTCACATTGTTTTACGACACGATCTCGTAAC
TCGGCCGTTGCACTTAGACTCGTTTTGTGTTGGAATTTCGCTTCTTCTAT
TACATTTATGATACCAAGTCCCCCGAATTTTGTCGGCAAAGCCATCAAGC
GACGTTCAGTATCATTGCATTGTCTTCCATCGCAGAAGGCGGGAATCAAG
GAATCAAGTGGAATCTGATGACGTTTTCAAGTGGTATCAGGTATTCGTCA
AGGTCTTTGACCGTACAGAATATATGTAGTTGAATTTTTGACGNCTAGAT
GTGGACAAATTATCTTTATGTTCTGGATCATGACGGCACGATTAATGCTG
TTGAACGCGTTGCTTGCATCCACCAGAAGAACAGCTTCAGTTTCAACGTC
GTTGTAGATATCAGCCATTGCATGAACAGCAGTCTCGCAACCTCCGAGTT
GTCCTGCACATAGTTGTAGGTTTCCAGAAGCATCTTGTATGTCTTTCTTA
AAAATTGTTGTTATTGATTTCCCAACAATCCTTCTAAGTACTTCACCGAT
GCCAATGGGACGTACACCTGGATTCTTGTTGAGTGGTACGAGAGTGCACG
AAAGAAAAGCCTCCATGTCACGGCCATTCTCTTTATCACATTTTTCGGTG
CACATCGTGATGGCCATTTTGGCGATAGCTTTCGCCAGATCGTGTGAGCG
GTcaccaaaactttttgaaagcaACAATCGATGCCACATGCTTGAGTCTA
GTTGGGAGGGCCCCGATGACCCTTTTGTTTTAGCCGCCATCTTCTGAATC
AGTTCTGCGTCAATCACATGAAACGTTAGGGGATGAACATCGAACACTGG
ACCTTCAAGAAGAAGATCGTCAAATTTGGGTTGTGCTTGTGGGTGCTTCT
CTTGAAGTGTGTTGATGATCTGGTCATTGATCGGAACCAGACCAGTCGAG
CTTTCATTTGACAAGAGTTTTAATGCAGCGTTGACTTTACCAAGGAACAT
CAGATCACTGAATCGTTTTTTGATCGTGGATATCTTCTTGGTGGTGGAGC
TAAGAATTCGATTTTGGATGGCTCTGCTTTCTCTTGTCAGCTCGTCAAAA
TCACCCTGCTCCCAAAGATTCAGTCGTCGGTCCAAAAATTTGATGTGATC
TTTGGATTTCGATGACTTGGAAGGTTTTTGTAGCAAAAGACAANGATTTT
GGATAGCTCTGCTTTCTCTTGTCAGCTCGTCAAAATCACCCTGCTCCCAA
AGATTCAGTCGTCGGTCCAAAAATTTGATGTGATCTTTGGATTTCGAAGA
CTTGGAAGGTTTTTGTAGCAAGAGACAGGGCATGATAAACAGAGCTTTGA
GAGCGATGTTCGATAGAGTAGATTTGTTGTTCCATTCATTGATCAAGCGG
GTGCATTCTTCTACAAAGCGCTTGCCGGCAGCACCACTGGGGAGGTTGAA
CAAATTTTTCTTCCATTTGGTTGTTTCGTTGTATGTTGCGCTGAGAATTT
GTGATAGATCTTCGCTTGTGTGTGGACCCCATAGTTGTGGTTCGTTGTTA
AGTTCATTCGTATTGGATGGGTTGAGTTCCGCATCATGGGTAGCTTTTAC
ATTCTCGTTTACGTCATTGTTGGTTGAGTTttctgacgtcactttttctg
aTGGTGAAATTGTCGTTGGCGCTGGAATGTCTTCTTGctttttgacacat
ttgttTCTATGTCTTGTCCGTCCACCCTTGTTTTGAAATACTTTCCCACA
TACATCACATGAGTAGGTTTCTGAATGATTTTGTCTTGGTTGGGATAAGG
GGAGGTTCTTGTTGTTTGGTGATACTTCTTGTTCCTGCAGTCGAGGTTTC
GCTATTGCTTCGGAAAATAGCTGAAAGAACGATTTCGCTGGTTGTATCGT
CTTTGTCGAGGAACAAGCAAGATTCTTCGTATTTTCACTTATCTTCAGGC
CTGGACCAGATGTCGATTCGTCACGGACCTCGTCTTTTTCACATCCTGTC
GCCATTTCTGAGGCAAGACAGGGTAAAGTGTGGTGTATTCTAGACTCTTC
ACTCGTTCGGCGAGACGCGTCTACCTCCTGGCCGCAGAGGATTTTTCTTC
GGGCTTAATATTCGAGCCTGTCAGTCCAACTGACCCTCTGCACCCTTGAC
TGCGGGCGTCTTTTCTTCGAGGTACACGTTCGCCCTCACTCTCACGCTAC
CTTGACTGCGGTAGTCTTTTCTTCAGGATTTTTCGACCTTGTCTAGCACC
ACTTCGGATTGTGACGGAATAAATGTTTTGCGAAAAAGAAGGCAAGTTCT
GCTTGTTCTGCAAGTTCTGCTTTTGACACACGGAAGACTTTGGTTGTATC
ACGATGCTTTCTTGAAGATTTCTTTCCAATATCCCAGATTTTTAACTCTT
CTTGGTTTACTGTTCTCGCCGGATTCTTTTCTTCTCCGCAGCATGACCGT
CCGCCATCTTTAACCGTTTTCGATAAAAAAAAAAAATCAATATCAATCAA
ATTATTAactcgccaagatttcctttgcgaaccggaaagcggttggtaga
tcattaagcagacctatactacctggggttttgtagaggtctgcgattca
gac Coding sequence (CDS) from alignment at scaffold_482:474163..477115 >TCONS_00068336 ID=TCONS_00068336|Name=TCONS_00068336|organism=Clytia hemisphaerica|type=CDS|length=1758bp|location=Sequence derived from alignment at scaffold_482:474163..477115 (Clytia hemisphaerica)
TCAAGGTCTTTGACCGTACAGAATATATGTAGTTGAATTTTTGACGNCTA
GATGTGGACAAATTATCTTTATGTTCTGGATCATGACGGCACGATTAATG
CTGTTGAACGCGTTGCTTGCATCCACCAGAAGAACAGCTTCAGTTTCAAC
GTCGTTGTAGATATCAGCCATTGCATGAACAGCAGTCTCGCAACCTCCGA
GTTGTCCTGCACATAGTTGTAGGTTTCCAGAAGCATCTTGTATGTCTTTC
TTAAAAATTGTTGTTATTGATTTCCCAACAATCCTTCTAAGTACTTCACC
GATGCCAATGGGACGTACACCTGGATTCTTGTTGAGTGGTACGAGAGTGC
ACGAAAGAAAAGCCTCCATGTCACGGCCATTCTCTTTATCACATTTTTCG
GTGCACATCGTGATGGCCATTTTGGCGATAGCTTTCGCCAGATCGTGTGA
GCGGTcaccaaaactttttgaaagcaACAATCGATGCCACATGCTTGAGT
CTAGTTGGGAGGGCCCCGATGACCCTTTTGTTTTAGCCGCCATCTTCTGA
ATCAGTTCTGCGTCAATCACATGAAACGTTAGGGGATGAACATCGAACAC
TGGACCTTCAAGAAGAAGATCGTCAAATTTGGGTTGTGCTTGTGGGTGCT
TCTCTTGAAGTGTGTTGATGATCTGGTCATTGATCGGAACCAGACCAGTC
GAGCTTTCATTTGACAAGAGTTTTAATGCAGCGTTGACTTTACCAAGGAA
CATCAGATCACTGAATCGTTTTTTGATCGTGGATATCTTCTTGGTGGTGG
AGCTAAGAATTCGATTTTGGATGGCTCTGCTTTCTCTTGTCAGCTCGTCA
AAATCACCCTGCTCCCAAAGATTCAGTCGTCGGTCCAAAAATTTGATGTG
ATCTTTGGATTTCGATGACTTGGAAGGTTTTTGTAGCAAAAGACAANGAT
TTTGGATAGCTCTGCTTTCTCTTGTCAGCTCGTCAAAATCACCCTGCTCC
CAAAGATTCAGTCGTCGGTCCAAAAATTTGATGTGATCTTTGGATTTCGA
AGACTTGGAAGGTTTTTGTAGCAAGAGACAGGGCATGATAAACAGAGCTT
TGAGAGCGATGTTCGATAGAGTAGATTTGTTGTTCCATTCATTGATCAAG
CGGGTGCATTCTTCTACAAAGCGCTTGCCGGCAGCACCACTGGGGAGGTT
GAACAAATTTTTCTTCCATTTGGTTGTTTCGTTGTATGTTGCGCTGAGAA
TTTGTGATAGATCTTCGCTTGTGTGTGGACCCCATAGTTGTGGTTCGTTG
TTAAGTTCATTCGTATTGGATGGGTTGAGTTCCGCATCATGGGTAGCTTT
TACATTCTCGTTTACGTCATTGTTGGTTGAGTTttctgacgtcacttttt
ctgaTGGTGAAATTGTCGTTGGCGCTGGAATGTCTTCTTGctttttgaca
catttgttTCTATGTCTTGTCCGTCCACCCTTGTTTTGAAATACTTTCCC
ACATACATCACATGAGTAGGTTTCTGAATGATTTTGTCTTGGTTGGGATA
AGGGGAGGTTCTTGTTGTTTGGTGATACTTCTTGTTCCTGCAGTCGAGGT
TTCGCTATTGCTTCGGAAAATAGCTGAAAGAACGATTTCGCTGGTTGTAT
CGTCTTTGTCGAGGAACAAGCAAGATTCTTCGTATTTTCACTTATCTTCA
GGCCTGGACCAGATGTCGATTCGTCACGGACCTCGTCTTTTTCACATCCT
GTCGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068336-exon-scaffold_482-1491911889:474163..477115 | TCONS_00068336-exon-scaffold_482-1491911889:474163..477115 | Clytia hemisphaerica | exon |
| TCONS_00068336-exon-scaffold_482-1510915933:474163..477115 | TCONS_00068336-exon-scaffold_482-1510915933:474163..477115 | Clytia hemisphaerica | exon |
| TCONS_00068336-exon-scaffold_482-1575043694:474163..477115 | TCONS_00068336-exon-scaffold_482-1575043694:474163..477115 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_482 | supercontig | scaffold_482:474163..477115 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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