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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068328 ID=TCONS_00068328|Name=TCONS_00068328|organism=Clytia hemisphaerica|type=transcript|length=1099bp
gtcataatcagtttttgtggtttttcgcgaaaatcagcgaaaaaaaatta
ggttacacgagaaatcagcaaaatacgaaattttgcaataaagtgctgac
gtcagaaaaattttaaaaatattttttttaaatgatccttttaatagTNT
GGTATTCAAACCACCATCGAAGAATCAGTTGGTCAATCTTGGGATTTCAA
GTTTTATAGCGACATGCTATATGTATCGAATCTATTTGTATTTTCGTTTG
GTCGGTGATATTGAATGGCTTAATGTGACATTATGGATTATCAATCCATT
CATGAAGTCAACAGTCGTTATTGTAGACGAACTATTTACAATGAGTGTTT
TGGCCCAAATGGTTCCATCCAATACTCAAGCATTTTCTGAAAGTGTTCGT
TTGGTGTTCTCCAGATTAGGAGCAACAGTTGCTTTGTTCACTGCAGCATT
CGcctttgaatatattttatatctttGCCCAGCATTCATGGCTATTTCTT
TGGTATTGATGCTTTTCTTGTTTTGGAGAAAGGAACACTTTCAAAATCCG
AGAATGCTGATTTcttaaaaggaaaatatttgCAGGGAAGTAGAAGAAAA
agacaatattttcaaacaatCTATTGTAACGAACCTTGTAGAAAACTTGA
TGAAGTCCATTTCACTGAAAAGCTGAAATTTCGGaacttgaattaaaaaa
agaacagGGAAATAACAGTGTTCCCCTTTTTAGATCTTGACATTGCAATT
AAGAACaaacaatgggcttttccagaaaaaaaaccgtataccccctgttg
aggaggtctatTTCCGTTCCAAAGGGGTAAGGTCTAATAAGTgccggaat
tccatagggagatacaaaaatctgtcaaaaataactggaatttcatgggg
ggggggtagccttttaaatcctactaaaattcagaattccagaggggttt
aaacctgaaattgcctggaattccaggggattacagcatttccagccaca
aaatgatggacctcctcaacagctTTTTTCTGCCCAATTCAAGACCAAAC
TTTTTGTTAAACGTGATGCATTTCCTTTTAAAACCATTAGAATGCCCAA Run BLAST on NCBI protein sequence of TCONS_00068328-protein >TCONS_00068328-protein ID=TCONS_00068328-protein|Name=TCONS_00068328-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
MYRIYLYFRLVGDIEWLNVTLWIINPFMKSTVVIVDELFTMSVLAQMVPS
NTQAFSESVRLVFSRLGATVALFTAAFAFEYILYLCPAFMAISLVLMLFL
FWRKEHFQNPRMLIS Run BLAST on NCBI transcript from alignment at scaffold_482:301438..302536 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068328 ID=TCONS_00068328|Name=TCONS_00068328|organism=Clytia hemisphaerica|type=transcript|length=1099bp|location=Sequence derived from alignment at scaffold_482:301438..302536 (Clytia hemisphaerica)
TTGGGCATTCTAATGGTTTTAAAAGGAAATGCATCACGTTTAACAAAAAG
TTTGGTCTTGAATTGGGCAGAAAAAagctgttgaggaggtccatcatttt
gtggctggaaatgctgtaatcccctggaattccaggcaatttcaggttta
aacccctctggaattctgaattttagtaggatttaaaaggctaccccccc
cccatgaaattccagttatttttgacagatttttgtatctccctatggaa
ttccggcACTTATTAGACCTTACCCCTTTGGAACGGAAatagacctcctc
aacagggggtatacggttttttttctggaaaagcccattgtttGTTCTTA
ATTGCAATGTCAAGATCTAAAAAGGGGAACACTGTTATTTCCctgttctt
tttttaattcaagttCCGAAATTTCAGCTTTTCAGTGAAATGGACTTCAT
CAAGTTTTCTACAAGGTTCGTTACAATAGattgtttgaaaatattgtctT
TTTCTTCTACTTCCCTGcaaatattttccttttaagAAATCAGCATTCTC
GGATTTTGAAAGTGTTCCTTTCTCCAAAACAAGAAAAGCATCAATACCAA
AGAAATAGCCATGAATGCTGGGCaaagatataaaatatattcaaaggCGA
ATGCTGCAGTGAACAAAGCAACTGTTGCTCCTAATCTGGAGAACACCAAA
CGAACACTTTCAGAAAATGCTTGAGTATTGGATGGAACCATTTGGGCCAA
AACACTCATTGTAAATAGTTCGTCTACAATAACGACTGTTGACTTCATGA
ATGGATTGATAATCCATAATGTCACATTAAGCCATTCAATATCACCGACC
AAACGAAAATACAAATAGATTCGATACATATAGCATGTCGCTATAAAACT
TGAAATCCCAAGATTGACCAACTGATTCTTCGATGGTGGTTTGAATACCA
NActattaaaaggatcatttaaaaaaaatatttttaaaatttttctgacg
tcagcactttattgcaaaatttcgtattttgctgatttctcgtgtaacct
aattttttttcgctgattttcgcgaaaaaccacaaaaactgattatgac Coding sequence (CDS) from alignment at scaffold_482:301438..302536 >TCONS_00068328 ID=TCONS_00068328|Name=TCONS_00068328|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at scaffold_482:301438..302536 (Clytia hemisphaerica)
ttaagAAATCAGCATTCTCGGATTTTGAAAGTGTTCCTTTCTCCAAAACA
AGAAAAGCATCAATACCAAAGAAATAGCCATGAATGCTGGGCaaagatat
aaaatatattcaaaggCGAATGCTGCAGTGAACAAAGCAACTGTTGCTCC
TAATCTGGAGAACACCAAACGAACACTTTCAGAAAATGCTTGAGTATTGG
ATGGAACCATTTGGGCCAAAACACTCATTGTAAATAGTTCGTCTACAATA
ACGACTGTTGACTTCATGAATGGATTGATAATCCATAATGTCACATTAAG
CCATTCAATATCACCGACCAAACGAAAATACAAATAGATTCGATACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068328-exon-scaffold_482-1491911889:301438..302536 | TCONS_00068328-exon-scaffold_482-1491911889:301438..302536 | Clytia hemisphaerica | exon |
| TCONS_00068328-exon-scaffold_482-1510915933:301438..302536 | TCONS_00068328-exon-scaffold_482-1510915933:301438..302536 | Clytia hemisphaerica | exon |
| TCONS_00068328-exon-scaffold_482-1575043694:301438..302536 | TCONS_00068328-exon-scaffold_482-1575043694:301438..302536 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_482 | supercontig | scaffold_482:301438..302536 . |
Blast
The following BLAST results are available for this feature:
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